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layout id in_foundry_order title review description domain homepage mailing_list tracker repository contact license depicted_by build integration_server products browsers publications usages activity_status preferredPrefix
ontology_detail
obi
1
Ontology for Biomedical Investigations
An integrated ontology for the description of life-science and clinical investigations
investigations
label email github orcid
Bjoern Peters
bpeters42
0000-0002-8457-6693
id description title
obi.owl
The full version of OBI in OWL format
OBI
id description title
obi.obo
The OBO-format version of OBI
OBI in OBO
id description title
obi/obi_core.owl
A collection of important high-level terms and their relations from OBI and other ontologies
OBI Core
id description title
obi/obi-base.owl
Base module for OBI
OBI Base module
label title url
BioPortal
BioPortal Browser
id title
The Ontology for Biomedical Investigations
user description examples
The Immune Epitope Database (IEDB) is funded by NIAID that catalogs experimental data on antibody and T cell epitopes studied in humans, non-human primates, and other animal species in the context of infectious disease, allergy, autoimmunity and transplantation.
url description
A specific assay curated in the IEDB using the OBI:1110180 '3H-thymidine assay measuring epitope specific proliferation of T cells' ('3H-thymidine')
user description examples
ENCODE is a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.
user description examples
The NASA GeneLab data repository hosts space biology and space-related datasets funded by multiple space agencies around the world.
url description
A specific assay annotated in NASA GeneLab using OBI:0001271 'RNA-seq assay'
user description examples
The CFDE is providing a centralized metadata resource to allow search across data coordination centers from multiple Common Fund programs.
url description
OBI is used in CFDE to captures types of experiments with assay terms such as OBI:0003094 'fluorescence in-situ hybridization assay'
user description examples
NIF is a dynamic inventory of Web-based neuroscience resources, data, and tools accessible via any computer connected to the Internet.
url description
A specific OBI term used to autocomplete in NIF search OBI:0100026 'organism'
active
OBI

The Ontology for Biomedical Investigations (OBI) project is developing an integrated ontology for the description of life-science and clinical investigations.