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Redirecting hmtnote dump #149

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Lucpen opened this issue May 22, 2023 · 0 comments
Open

Redirecting hmtnote dump #149

Lucpen opened this issue May 22, 2023 · 0 comments

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@Lucpen
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Lucpen commented May 22, 2023

Hi,
We are using hmtnote in our research and want to use it within an nf-core pipeline. We have tried running hmtnote dump while using docker and singularity containers but it fails because hmtnote tries to place the database within the container. Would it be possible to add an optional --out_dir parameter to hmtnote dump to redirect the output? I would be willing to do it myself if you like the idea but don't have the time to do so yourself.

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