Develop spec lean #30
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python application | |
| on: | |
| push: | |
| branches: [ "master" ] | |
| pull_request: | |
| branches: [ "master", "develop", "develop-specact" ] | |
| permissions: | |
| contents: read | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: "pip" | |
| - name: Install dependencies | |
| run: | | |
| pip install flake8 | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --ignore=F821 --show-source --statistics --exclude=build/* | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| test-pytest: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| pandas-version: [""] | |
| include: | |
| - python-version: "3.11" | |
| pandas-version: "pandas>2.0" | |
| coverage: true | |
| - python-version: "3.11" | |
| pandas-version: "pandas>1.5,<2.0" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable | |
| pip install .[dev] | |
| - if: ${{ matrix.pandas-version }} | |
| run: pip install "${{ matrix.pandas-version }}" | |
| - if: ${{ matrix.coverage }} | |
| run: | | |
| # python coverage | |
| NUMBA_DISABLE_JIT=1 pytest --cov --cov-branch --cov-report term-missing | |
| - if: ${{ ! matrix.coverage }} | |
| run: pytest | |
| test-cmd: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install hsp2 | |
| run: | | |
| # install the hsp2 executable | |
| pip install . | |
| - name: Run hsp2 | |
| run: | | |
| # TODO: find much shorter test case. | |
| hsp2 import_uci ./tests/test10/HSP2results/test10.uci _temp_test10.h5 | |
| hsp2 run _temp_test10.h5 | |