update pangolin to v2.1.6

update pangolin to v2.1.6

bugfix for no barcode run

bugfix for no barcode run (e.g. for flongle usage)

0.3.5

update to new pangolin version

update to newer pangolin version

update to newer pangolin version and some documentation fixes in --help and readme

medaka vcf output fix

Small addition to the result dir:

• added the VCF file of medaka to the output
• closes #7

plot fix

• fixed missing library in R

Singularity fix

• fixed some singularity pathing issues
• added log10 scale to coverage plot

1200bp primer support and more

• added pycoQC as QC after guppy 76d9beb
• added primer support for 1200 bp amplicons 76d9beb
• added a non stringend demultiplexing option 276db92
• various smaller bug fixes
• updated guppy c04646c
• a few plot options and filtering for "N"s e18b2b6
• everything is described via --help

version 0.2

• Some small bug fixes

0.1

• ready to use pre-release, extensively tested on docker
• some possible bugs in singularity (needs further testing)