1.11.1

What's Changed

• using the primer-trimmed bam file as input for freyja by @MarieLataretu in #277

Full Changelog: 1.11.0...1.11.1

1.11.0

What's Changed

• added nextclade_percentN_spike column to datatables by @MarieLataretu in #276

Full Changelog: 1.10.0...1.11.0

1.10.0 Freja integration and more

What's Changed

• changed the error strategy in slurm profile by @MarieLataretu in #265
• Freyja integration by @DataSpott in #268
• added the latest midnight primers (V5.2.0_1200) by @MarieLataretu in #269
• Feature add af to vc fs by @MarieLataretu in #273

Full Changelog: 1.9.4...1.9.5

1.9.4

What's Changed

• Feature: add nextclades pango assigment by @MarieLataretu in #261
• bump default container version for pangolin and nextclade by @MarieLataretu in #264

Full Changelog: 1.9.3...1.9.4

slight config adjustments

What's Changed

• added timestamp to reports; solves #256 by @MarieLataretu in #257

Full Changelog: 1.9.2...1.9.3

1.9.2

What's Changed

• bugfix in artic_wf for custom bed-files.

Full Changelog: 1.9.1...1.9.2

1.9.1

What's Changed

• fixed disabling of artic normalisation by @MarieLataretu in #258

Full Changelog: 1.9.0...1.9.1

1.9.0 updates and enhancements

What's Changed

• Update medaka by @MarieLataretu in #255
• [Enhancment] publish more logs/intermediate files from ARTIC by @MarieLataretu in #252
• [Feature] added parameter artic_normalize by @MarieLataretu in #251

Full Changelog: 1.8.3...1.9.0

1.8.3 bux fix on president docker

What's Changed

• updated president version and docker hub account by @MarieLataretu in #253

Full Changelog: 1.8.2...1.8.3

1.8.2

What's Changed

• Update medaka in artic by @hoelzer in #250

We're using the ARTIC pipeline in version 1.3.0-dev, which had an older medaka installed. In this release, we bump the medaka version to 1.7.2 and support newer models for R10.4.1 flow cells.

Full Changelog: 1.8.1...1.8.2