Update artic.nf

Fixed a typo in artics "normalise_threshold" intake for custom-bed files leading to an unknown variable crash.
replikation · Oct 17, 2023 · c17bc74 · c17bc74
1 parent 8b953c7
commit c17bc74
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/process/artic.nf b/workflows/process/artic.nf
@@ -78,7 +78,7 @@ process artic_medaka_custom_bed {
 
     input:
         tuple val(name), path(reads), path(external_scheme), path(primerBed)
-        val(normalize_threshold)
+        val(normalise_threshold)
     output:
         tuple val(name), path("*.consensus.fasta"), emit: fasta
         tuple val(name), path("${name}_mapped_*.primertrimmed.sorted.bam"), path("${name}_mapped_*.primertrimmed.sorted.bam.bai"), emit: reference_bam