pyproject.toml

[project]
name = "jacques_flu"
description = "Using jacques to analyze flu data"
license = {text = "MIT License"}
readme = "README.md"
requires-python = '>=3.10'
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
]
dynamic = ["version"]

dependencies = [
    "scipy",
    "structlog",
    "rich",
    "toml",
    "pandas>=1.3.0",
    "numpy>=1.26",
    "tensorflow>=2.16.1,<3",
    "tensorflow-probability==0.24.0",
    "tf-keras>=2.16,<3",
    "matplotlib >=3.5.1,<4",
    "pymmwr",
    "polars",
    "pyarrow",
    "timeseriesutils@git+https://github.com/reichlab/timeseriesutils/",
    "jacques@git+https://github.com/reichlab/jacques#egg=BWRedits", # referencing my branch for local work
   # 'data-pipeline@git+https://github.com/reichlab/flusion.git#subdirectory=code/data-pipeline',
]

[project.optional-dependencies]
dev = [
    "coverage",
    "freezegun",
    "mypy",
    "pre-commit",
    "pytest",
    "ruff",
    "types-toml",
]

[project.entry-points."console_scripts"]
jacques_flu = "jacques_flu.app:main"

[build-system]
# Minimum requirements for the build system to execute.
requires = ["setuptools", "wheel"]

[tools.setuptools]
packages = ["jacques_flu"]

[tool.jacques_flu]
# to write json-formatted logs to disk, uncomment the following line specify the file location
# log_file = "/path/to/log/files/jacques_flu.log"

[tool.ruff]
line-length = 120
lint.extend-select = ["I", "Q"]

[tool.ruff.lint.flake8-quotes]
inline-quotes = "double"

[tool.ruff.format]
quote-style = "double"

[tool.setuptools.dynamic]
version = {attr = "jacques_flu.__version__"}