.gitignore

# See also https://git-scm.com/docs/gitignore#_pattern_format
#   Entries without a slash are treated as globs (match in any directory).
#   Ending '/' matches directories only (as globs).
#   Leading '/' matches search root (location of .gitignore)
#   Leading '.' character has to be matched explicitly.
#   The '*' does not match '/' (use '**' to match >1 nested directories).

bin/ffx-all*.jar
bin/scheduler.log
conf/*.jar

modules/algorithms/temp-*

*.iml
*.tmp
nb-configuration.xml
nbactions.xml
catalog.xml
.DS_Store
.classpath
.project

keystore/
target/
scripts/
lib/
release/
website/
.settings/
.idea/
.netbeans/
.mvn/

velocity.log

bin/build.properties
modules/ffx-all/dependency-reduced-pom.xml
/archiveTesting/
/amoebabio18_cphmd.prm

python/__pycache__

bin/native-image
bin/reports
bin/META-INF

src/site/asciidoc/commands
src/site/asciidoc/keywords