From a3aa2b117a63dd6b270d2214f130a5edadb269fe Mon Sep 17 00:00:00 2001 From: Carson Date: Wed, 8 Sep 2021 09:01:26 -0500 Subject: [PATCH] bump version; add revdep --- DESCRIPTION | 2 +- NEWS.md | 2 +- revdep/.gitignore | 3 +- revdep/README.md | 281 +----- revdep/cran.md | 11 +- revdep/failures.md | 1440 +++++++++++++++++++++++++++- revdep/problems.md | 2242 +------------------------------------------- 7 files changed, 1493 insertions(+), 2488 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 38ffdb0e..da38db5f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: htmlwidgets Type: Package Title: HTML Widgets for R -Version: 1.5.3.9000 +Version: 1.5.4 Authors@R: c( person("Ramnath", "Vaidyanathan", role = c("aut", "cph")), person("Yihui", "Xie", role = c("aut")), diff --git a/NEWS.md b/NEWS.md index 70091f85..5710e8ee 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -htmlwidgets 1.5.3.9000 +htmlwidgets 1.5.4 ------------------------------------------------------- * Closed #320: `getDependency()` no longer includes an absolute src path in its return value. (#384) diff --git a/revdep/.gitignore b/revdep/.gitignore index 31f6c40d..1c3ca9da 100644 --- a/revdep/.gitignore +++ b/revdep/.gitignore @@ -1,6 +1,5 @@ checks library -checks.noindex -library.noindex +*.noindex* data.sqlite *.html diff --git a/revdep/README.md b/revdep/README.md index 146a29cd..adc6943f 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -1,244 +1,45 @@ -# Platform - -|field |value | -|:--------|:----------------------------| -|version |R version 4.0.2 (2020-06-22) | -|os |macOS Catalina 10.15.6 | -|system |x86_64, darwin17.0 | -|ui |X11 | -|language |(EN) | -|collate |en_US.UTF-8 | -|ctype |en_US.UTF-8 | -|tz |America/New_York | -|date |2020-09-30 | - -# Dependencies - -|package |old |new |Δ | -|:-----------|:-----|:-----|:--| -|htmlwidgets |1.5.1 |1.5.2 |* | - # Revdeps -## All (217) +## Failed to check (38) -|package |version |error |warning |note | -|:----------------------------------------------------|:--------|:-----|:-------|:----| -|altair |4.0.1 | | | | -|antaresViz |0.15.2 | | | | -|[apexcharter](problems.md#apexcharter) |0.1.6 | | |1 | -|arulesViz |1.3-3 | | | | -|asciicast |1.0.0 | | | | -|basictabler |0.3.1 | | | | -|[bea.R](problems.md#bear) |1.0.6 | | |1 | -|[bigPint](problems.md#bigpint) |1.4.0 |1 | |1 | -|[billboarder](problems.md#billboarder) |0.2.8 | | |1 | -|[bioCancer](problems.md#biocancer) |1.16.0 | |1 |2 | -|BioCircos |0.3.4 | | | | -|[BiocPkgTools](problems.md#biocpkgtools) |1.6.0 | | |1 | -|bookdown |0.20 | | | | -|c3 |0.3.0 | | | | -|canvasXpress |1.29.6 | | | | -|causact |0.3.3 | | | | -|[cellscape](problems.md#cellscape) |1.12.0 | |1 |3 | -|[chromoMap](problems.md#chromomap) |0.2 | | |1 | -|cli |2.0.2 | | | | -|CNVScope |3.1.8 | | | | -|collapsibleTree |0.1.7 | | | | -|colourpicker |1.1.0 | | | | -|covid19.analytics |2.0 | | | | -|cubeview |0.2.0 | | | | -|d3heatmap |0.6.1.2 | | | | -|[D3partitionR](problems.md#d3partitionr) |0.5.0 | | |1 | -|d3plus |0.1.0 | | | | -|[d3Tree](problems.md#d3tree) |0.2.0 | | |1 | -|data.tree |1.0.0 | | | | -|[datadigest](problems.md#datadigest) |1.0.2 | | |1 | -|datamaps |0.0.3 | | | | -|[DataVisualizations](problems.md#datavisualizations) |1.2.0 | | |1 | -|deckgl |0.2.7 | | | | -|DEploid |0.5.3 | | | | -|dextergui |0.2.2 | | | | -|[DiagrammeR](problems.md#diagrammer) |1.0.6.1 | | |2 | -|diffr |0.1 | | | | -|diffrprojectswidget |0.1.5 | | | | -|diffviewer |0.1.0 | | | | -|distill |0.8 | | | | -|dqshiny |0.0.4 | | | | -|dragulaR |0.3.1 | | | | -|[dsa](problems.md#dsa) |0.74.18 | | |1 | -|DT |0.15 | | | | -|dygraphs |1.1.1.6 | | | | -|[EBImage](problems.md#ebimage) |4.30.0 | | |1 | -|echarts4r |0.3.2 | | | | -|EcoGenetics |1.2.1-6 | | | | -|edgebundleR |0.1.4 | | | | -|[EGSEA](problems.md#egsea) |1.16.0 | | |1 | -|[EML](problems.md#eml) |2.0.3 | | |1 | -|eoffice |0.1.9 | | | | -|[epiflows](problems.md#epiflows) |0.2.0 | | |1 | -|excelR |0.4.0 | | | | -|faq |0.1.0 | | | | -|flashCard |0.1.0 | | | | -|flexdashboard |0.5.2 | | | | -|focusedMDS |1.3.3 | | | | -|formattable |0.2.0.1 | | | | -|fusionchartsR |0.0.1 | | | | -|[g3viz](problems.md#g3viz) |1.1.3 | | |1 | -|[GeneNetworkBuilder](problems.md#genenetworkbuilder) |1.30.0 | | |1 | -|[GenEst](problems.md#genest) |1.4.4 | | |1 | -|ggiraph |0.7.8 | | | | -|googleAnalyticsR |0.8.0 | | | | -|googleway |2.7.1 | | | | -|gradientPickerD3 |0.1.0.0 | | | | -|graph3d |0.1.0 | | | | -|gSEM |0.4.3.4 | | | | -|HARtools |0.0.5 | | | | -|[hchinamap](problems.md#hchinamap) |0.1.0 | | |1 | -|[heatmaply](problems.md#heatmaply) |1.1.1 |1 | |1 | -|hereR |0.5.0 | | | | -|highcharter |0.8.2 | | | | -|hpackedbubble |0.1.0 | | | | -|htmlTable |2.1.0 | | | | -|htmltidy |0.5.0 | | | | -|[hwordcloud](problems.md#hwordcloud) |0.1.0 | | |1 | -|ibmsunburst |0.1.1 | | | | -|iCellR |1.5.5 | | | | -|iheatmapr |0.5.0 | | | | -|imageviewer |0.1.0 | | | | -|[INDperform](problems.md#indperform) |0.2.2 |2 | |1 | -|inlmisc |0.5.2 | | | | -|jsTree |1.0.1 | | | | -|jsTreeR |1.0.0 | | | | -|[KDViz](problems.md#kdviz) |1.3.1 | | |1 | -|klustR |0.1.0 | | | | -|knitr |1.30 | | | | -|lazyrmd |0.2.0.1 | | | | -|leafem |0.1.3 | | | | -|leaflet |2.0.3 | | | | -|leaflet.esri |1.0.0 | | | | -|leaflet.extras |1.0.0 | | | | -|[leaflet.extras2](problems.md#leafletextras2) |1.0.0 | | |1 | -|leaflet.opacity |0.1.0 | | | | -|[leafpm](problems.md#leafpm) |0.1.0 | | |2 | -|leafpop |0.0.6 | | | | -|[leafsync](problems.md#leafsync) |0.1.0 | | |1 | -|leaftime |0.2.0 | | | | -|learnr |0.10.1 | | | | -|lime |0.5.1 | | | | -|listviewer |3.0.0 | | | | -|manifestoR |1.4.0 | | | | -|manipulateWidget |0.10.1 | | | | -|[mapdeck](problems.md#mapdeck) |0.3.4 | | |1 | -|[mapedit](problems.md#mapedit) |0.6.0 | | |1 | -|[mapscape](problems.md#mapscape) |1.12.0 | |1 |1 | -|mapview |2.9.0 | | | | -|[mdsr](problems.md#mdsr) |0.2.0 | | |2 | -|[MetaVolcanoR](problems.md#metavolcanor) |1.2.0 |2 | |2 | -|metricsgraphics |0.9.0 | | | | -|mindr |1.2.3 | | | | -|[motifStack](problems.md#motifstack) |1.32.1 |1 | | | -|msaR |0.3.0 | | | | -|muir |0.1.0 | | | | -|mwshiny |2.1.0 | | | | -|ndtv |0.13.0 | | | | -|netSEM |0.5.1 | | | | -|networkD3 |0.4 | | | | -|nomnoml |0.2.0 | | | | -|onemap |2.1.3 | | | | -|packageDiff |0.1 | | | | -|pagemap |0.1.1 | | | | -|[pairsD3](problems.md#pairsd3) |0.1.0 | | |1 | -|[parcats](problems.md#parcats) |0.0.2 | | |1 | -|parcoords |1.0.0 | | | | -|[parlitools](problems.md#parlitools) |0.4.1 | | |1 | -|[PathwaySplice](problems.md#pathwaysplice) |1.11.0 |1 | | | -|phylocanvas |0.1.3 | | | | -|[piano](problems.md#piano) |2.4.0 | | |2 | -|[pivottabler](problems.md#pivottabler) |1.5.0 | | |1 | -|pixels |0.1.0 | | | | -|[pkgdown](problems.md#pkgdown) |1.6.1 |1 | | | -|plainview |0.1.1 | | | | -|[Plasmidprofiler](problems.md#plasmidprofiler) |0.1.6 |1 | | | -|[plotly](problems.md#plotly) |4.9.2.1 | | |1 | -|plumber |1.0.0 | | | | -|ppcSpatial |0.2.0 | | | | -|[processanimateR](problems.md#processanimater) |1.0.3 | | |1 | -|profvis |0.3.6 | | | | -|Prostar |1.20.0 | | | | -|QRAGadget |0.1.0 | | | | -|qrage |1.0 | | | | -|qtlcharts |0.12-10 | | | | -|r2d3 |0.2.3 | | | | -|rabhit |0.1.5 | | | | -|radarchart |0.3.1 | | | | -|radix |0.6 | | | | -|[RagGrid](problems.md#raggrid) |0.2.0 | | |1 | -|[rAmCharts](problems.md#ramcharts) |2.1.13 | | |1 | -|[rAmCharts4](problems.md#ramcharts4) |0.1.0 | | |1 | -|[rbokeh](problems.md#rbokeh) |0.5.1 | | |1 | -|rchess |0.1 | | | | -|reactable |0.2.2 | | | | -|reactR |0.4.3 | | | | -|[rgeoprofile](problems.md#rgeoprofile) |0.2.0 | | |1 | -|[rgl](problems.md#rgl) |0.100.54 | | |2 | -|[rhandsontable](problems.md#rhandsontable) |0.3.7 | | |1 | -|[RKorAPClient](problems.md#rkorapclient) |0.5.9 |2 | | | -|robservable |0.2.0 | | | | -|[rosr](problems.md#rosr) |0.0.10 | | |1 | -|rpivotTable |0.3.0 | | | | -|[safetyGraphics](problems.md#safetygraphics) |1.1.0 | | |1 | -|sankeywheel |0.1.0 | | | | -|scatterD3 |0.9.1 | | | | -|seasonalview |0.3 | | | | -|[shiny.semantic](problems.md#shinysemantic) |0.4.0 | | |1 | -|[shinyaframe](problems.md#shinyaframe) |1.0.1 | | |1 | -|shinybusy |0.2.2 | | | | -|shinyCyJS |0.0.11 | | | | -|shinyjqui |0.3.3 | | | | -|shinyservicebot |0.1.0 | | | | -|shinytest |1.4.0 | | | | -|shinyTree |0.2.7 | | | | -|[sigmajs](problems.md#sigmajs) |0.1.5 | | |1 | -|sigmaNet |1.1.0 | | | | -|simPATHy |0.4 | | | | -|[slickR](problems.md#slickr) |0.4.9 |1 | | | -|[slideview](problems.md#slideview) |0.1.0 | | |1 | -|SMITIDvisu |0.0.6 | | | | -|sortable |0.4.4 | | | | -|sparkline |2.0 | | | | -|[SpatialEpiApp](problems.md#spatialepiapp) |0.3 | | |2 | -|[spinifex](problems.md#spinifex) |0.2.5 |1 | | | -|[sRACIPE](problems.md#sracipe) |1.4.0 | | |1 | -|[stringr](problems.md#stringr) |1.4.0 | | |1 | -|sunburstR |2.1.4 | | | | -|[svgPanZoom](problems.md#svgpanzoom) |0.3.4 | | |1 | -|threeBrain |0.1.8 | | | | -|threejs |0.3.3 | | | | -|tidycwl |1.0.4 | | | | -|[timescape](problems.md#timescape) |1.8.0 | |1 |3 | -|[timevis](problems.md#timevis) |1.0.0 | | |1 | -|tippy |0.0.1 | | | | -|tmap |3.2 | | | | -|TnT |1.10.0 | | | | -|[trackViewer](problems.md#trackviewer) |1.24.2 | | |2 | -|[treespace](problems.md#treespace) |1.1.3.2 | | |1 | -|[trelliscopejs](problems.md#trelliscopejs) |0.2.5 |1 | | | -|twitterwidget |0.1.1 | | | | -|[uavRmp](problems.md#uavrmp) |0.5.7 | | |1 | -|upsetjs |1.6.0 | | | | -|[ursa](problems.md#ursa) |3.8.20 | | |1 | -|[vdiffr](problems.md#vdiffr) |0.3.2.2 | | |1 | -|vegalite |0.6.1 | | | | -|vegawidget |0.3.1 | | | | -|vip |0.2.2 | | | | -|[ViSEAGO](problems.md#viseago) |1.2.0 | |1 |2 | -|[visNetwork](problems.md#visnetwork) |2.0.9 | | |1 | -|Visualize.CRAN.Downloads |1.0 | | | | -|[vizdraws](problems.md#vizdraws) |1.0.0 | | |1 | -|voronoiTreemap |0.2.0 | | | | -|VOSONDash |0.5.7 | | | | -|vtree |5.0.0 | | | | -|widgetframe |0.3.1 | | | | -|[wordcloud2](problems.md#wordcloud2) |0.2.1 | | |1 | +|package |version |error |warning |note | +|:----------|:-------|:-----|:-------|:----| +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|flipr |0.3.0 |1 | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|rabhit |? | | | | +|NA |? | | | | +|NA |? | | | | +|SMITIDvisu |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | +|NA |? | | | | diff --git a/revdep/cran.md b/revdep/cran.md index 91d3c5f0..266fa005 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -1,7 +1,14 @@ ## revdepcheck results -We checked 217 reverse dependencies (199 from CRAN + 18 from BioConductor), comparing R CMD check results across CRAN and dev versions of this package. +We checked 263 reverse dependencies (228 from CRAN + 35 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. * We saw 0 new problems - * We failed to check 0 packages + * We failed to check 3 packages +Issues with CRAN packages are summarised below. + +### Failed to check + +* flipr (NA) +* rabhit (NA) +* SMITIDvisu (NA) diff --git a/revdep/failures.md b/revdep/failures.md index 9a207363..cab15c8d 100644 --- a/revdep/failures.md +++ b/revdep/failures.md @@ -1 +1,1439 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# flipr + +
+ +* Version: 0.3.0 +* GitHub: https://github.com/astamm/flipr +* Source code: https://github.com/cran/flipr +* Date/Publication: 2021-09-01 09:10:02 UTC +* Number of recursive dependencies: 130 + +Run `cloud_details(, "flipr")` for more info + +
+ +## In both + +* checking whether package ‘flipr’ can be installed ... ERROR + ``` + Installation failed. + See ‘/tmp/workdir/flipr/new/flipr.Rcheck/00install.out’ for details. + ``` + +## Installation + +### Devel + +``` +* installing *source* package ‘flipr’ ... +** package ‘flipr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c dissimilarityMatrixStatistics.cpp -o dissimilarityMatrixStatistics.o +g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c distUtils.cpp -o distUtils.o +g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o flipr.so RcppExports.o dissimilarityMatrixStatistics.o distUtils.o -L/opt/R/4.0.3/lib/R/lib -lR +installing to /tmp/workdir/flipr/new/flipr.Rcheck/00LOCK-flipr/00new/flipr/libs +** R +Error in parse(outFile) : + /tmp/workdir/flipr/new/flipr.Rcheck/00_pkg_src/flipr/R/plausibility-class.R:637:38: unexpected '>' +636: } +637: self$grid$pvalue <- self$grid |> + ^ +ERROR: unable to collate and parse R files for package ‘flipr’ +* removing ‘/tmp/workdir/flipr/new/flipr.Rcheck/flipr’ + + +``` +### CRAN + +``` +* installing *source* package ‘flipr’ ... +** package ‘flipr’ successfully unpacked and MD5 sums checked +** using staged installation +** libs +g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c dissimilarityMatrixStatistics.cpp -o dissimilarityMatrixStatistics.o +g++ -std=gnu++11 -I"/opt/R/4.0.3/lib/R/include" -DNDEBUG -I'/opt/R/4.0.3/lib/R/site-library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c distUtils.cpp -o distUtils.o +g++ -std=gnu++11 -shared -L/opt/R/4.0.3/lib/R/lib -L/usr/local/lib -o flipr.so RcppExports.o dissimilarityMatrixStatistics.o distUtils.o -L/opt/R/4.0.3/lib/R/lib -lR +installing to /tmp/workdir/flipr/old/flipr.Rcheck/00LOCK-flipr/00new/flipr/libs +** R +Error in parse(outFile) : + /tmp/workdir/flipr/old/flipr.Rcheck/00_pkg_src/flipr/R/plausibility-class.R:637:38: unexpected '>' +636: } +637: self$grid$pvalue <- self$grid |> + ^ +ERROR: unable to collate and parse R files for package ‘flipr’ +* removing ‘/tmp/workdir/flipr/old/flipr.Rcheck/flipr’ + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# rabhit + +
+ +* Version: 0.1.5 +* GitHub: NA +* Source code: https://github.com/cran/rabhit +* Date/Publication: 2020-07-11 22:40:02 UTC +* Number of recursive dependencies: 128 + +Run `cloud_details(, "rabhit")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/rabhit/new/rabhit.Rcheck’ +* using R version 4.0.3 (2020-10-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘rabhit/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘rabhit’ version ‘0.1.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'alakazam', 'tigger' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/rabhit/old/rabhit.Rcheck’ +* using R version 4.0.3 (2020-10-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘rabhit/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘rabhit’ version ‘0.1.5’ +* package encoding: UTF-8 +* checking package namespace information ... OK +* checking package dependencies ... ERROR +Packages required but not available: 'alakazam', 'tigger' + +See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ +manual. +* DONE +Status: 1 ERROR + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# SMITIDvisu + +
+ +* Version: 0.0.9 +* GitHub: NA +* Source code: https://github.com/cran/SMITIDvisu +* Date/Publication: 2021-02-08 08:50:03 UTC +* Number of recursive dependencies: 94 + +Run `cloud_details(, "SMITIDvisu")` for more info + +
+ +## Error before installation + +### Devel + +``` +* using log directory ‘/tmp/workdir/SMITIDvisu/new/SMITIDvisu.Rcheck’ +* using R version 4.0.3 (2020-10-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘SMITIDvisu/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘SMITIDvisu’ version ‘0.0.9’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... +* checking data for non-ASCII characters ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: 1 NOTE + + + + + +``` +### CRAN + +``` +* using log directory ‘/tmp/workdir/SMITIDvisu/old/SMITIDvisu.Rcheck’ +* using R version 4.0.3 (2020-10-10) +* using platform: x86_64-pc-linux-gnu (64-bit) +* using session charset: UTF-8 +* using options ‘--no-manual --no-build-vignettes’ +* checking for file ‘SMITIDvisu/DESCRIPTION’ ... OK +* checking extension type ... Package +* this is package ‘SMITIDvisu’ version ‘0.0.9’ +* package encoding: UTF-8 +* checking package namespace information ... OK +... +* checking data for non-ASCII characters ... OK +* checking data for ASCII and uncompressed saves ... OK +* checking line endings in C/C++/Fortran sources/headers ... OK +* checking compiled code ... OK +* checking examples ... OK +* checking for unstated dependencies in ‘tests’ ... OK +* checking tests ... OK + Running ‘testthat.R’ +* DONE +Status: 1 NOTE + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` +# NA + +
+ +* Version: NA +* GitHub: NA +* Source code: https://github.com/cran/NA +* Number of recursive dependencies: 0 + +Run `cloud_details(, "NA")` for more info + +
+ +## Error before installation + +### Devel + +``` + + + + + + +``` +### CRAN + +``` + + + + + + +``` diff --git a/revdep/problems.md b/revdep/problems.md index 711b134e..9a207363 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1,2241 +1 @@ -# apexcharter - -
- -* Version: 0.1.6 -* GitHub: https://github.com/dreamRs/apexcharter -* Source code: https://github.com/cran/apexcharter -* Date/Publication: 2020-09-09 14:50:07 UTC -* Number of recursive dependencies: 73 - -Run `revdep_details(, "apexcharter")` for more info - -
- -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 230 marked UTF-8 strings - ``` - -# bea.R - -
- -* Version: 1.0.6 -* GitHub: https://github.com/us-bea/bea.R -* Source code: https://github.com/cran/bea.R -* Date/Publication: 2018-02-23 19:30:19 UTC -* Number of recursive dependencies: 76 - -Run `revdep_details(, "bea.R")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘Rcpp’ ‘chron’ ‘colorspace’ ‘gtable’ ‘htmltools’ ‘htmlwidgets’ - ‘httpuv’ ‘magrittr’ ‘munsell’ ‘plyr’ ‘scales’ ‘stringi’ ‘xtable’ - ‘yaml’ - All declared Imports should be used. - ``` - -# bigPint - -
- -* Version: 1.4.0 -* GitHub: https://github.com/lindsayrutter/bigPint -* Source code: https://github.com/cran/bigPint -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 165 - -Run `revdep_details(, "bigPint")` for more info - -
- -## In both - -* checking examples ... ERROR - ``` - ... - > # blue parallel coordinate lines. - > - > geneList = soybean_ir_sub_metrics[["N_P"]][1:10,]$ID - > ret <- plotPCP(data = soybean_ir_sub, geneList = geneList, lineSize = 0.3, - + lineColor = "blue", saveFile = FALSE) - > ret[[1]] - > - > # Example 4: Repeat this same procedure, only now set the hover parameter to - > # TRUE to allow us to hover over blue parallel coordinate lines and - > # determine their individual IDs. - > - > ret <- plotPCP(data = soybean_ir_sub, geneList = geneList, lineSize = 0.3, - + lineColor = "blue", saveFile = FALSE, hover = TRUE) - Error: .onLoad failed in loadNamespace() for 'Cairo', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so': - dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so, 6): Symbol not found: _EXTPTR_PTR - Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Expected in: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib - in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Execution halted - ``` - -* checking installed package size ... NOTE - ``` - installed size is 8.1Mb - sub-directories of 1Mb or more: - data 2.1Mb - doc 2.7Mb - shiny-examples 3.0Mb - ``` - -# billboarder - -
- -* Version: 0.2.8 -* GitHub: https://github.com/dreamRs/billboarder -* Source code: https://github.com/cran/billboarder -* Date/Publication: 2020-01-09 18:30:26 UTC -* Number of recursive dependencies: 77 - -Run `revdep_details(, "billboarder")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.0Mb - sub-directories of 1Mb or more: - doc 3.4Mb - ``` - -# bioCancer - -
- -* Version: 1.16.0 -* GitHub: https://github.com/kmezhoud/bioCancer -* Source code: https://github.com/cran/bioCancer -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 208 - -Run `revdep_details(, "bioCancer")` for more info - -
- -## In both - -* checking Rd files ... WARNING - ``` - checkRd: (5) bioCancer.Rd:0-20: Must have a \description - ``` - -* checking installed package size ... NOTE - ``` - installed size is 8.3Mb - sub-directories of 1Mb or more: - app 3.3Mb - doc 2.8Mb - extdata 1.6Mb - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘AlgDesign’ ‘import’ ‘methods’ ‘shinythemes’ - All declared Imports should be used. - ``` - -# BiocPkgTools - -
- -* Version: 1.6.0 -* GitHub: https://github.com/seandavi/BiocPkgTools -* Source code: https://github.com/cran/BiocPkgTools -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 116 - -Run `revdep_details(, "BiocPkgTools")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘rappdirs’ - All declared Imports should be used. - Unexported object imported by a ':::' call: ‘BiocManager:::.repositories’ - See the note in ?`:::` about the use of this operator. - ``` - -# cellscape - -
- -* Version: 1.12.0 -* GitHub: NA -* Source code: https://github.com/cran/cellscape -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 39 - -Run `revdep_details(, "cellscape")` for more info - -
- -## In both - -* checking Rd \usage sections ... WARNING - ``` - Duplicated \argument entries in documentation object 'dfs_tree': - ‘chrom_bounds’ ‘ncols’ ‘chrom_bounds’ ‘cnv_data’ ‘chrom_bounds’ - ‘n_bp_per_pixel’ ‘mut_data’ ‘width’ ‘height’ ‘mutations’ ‘height’ - ‘width’ ‘clonal_prev’ ‘tree_edges’ ‘alpha’ ‘clonal_prev’ ‘tree_edges’ - ‘genotype_position’ ‘clone_colours’ ‘perturbations’ ‘mutations’ - ‘tree_edges’ ‘clonal_prev’ ‘clonal_prev’ ‘tree_edges’ ‘clone_colours’ - ‘mutations’ - - Functions with \usage entries need to have the appropriate \alias - entries, and all their arguments documented. - The \usage entries must correspond to syntactically valid R code. - See chapter ‘Writing R documentation files’ in the ‘Writing R - Extensions’ manual. - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘plyr’ - All declared Imports should be used. - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - getMutOrder: no visible binding for global variable ‘VAF’ - getMutOrder: no visible global function definition for ‘lm’ - getMutOrder: no visible binding for global variable ‘na.omit’ - getMutOrder: no visible global function definition for ‘coef’ - getMutationsData: no visible binding for global variable - ‘show_warnings’ - getTargetedHeatmapForEachSC: no visible binding for global variable - ‘single_cell_id’ - getTargetedHeatmapForEachSC: no visible binding for global variable - ‘chr’ - getTargetedHeatmapForEachSC: no visible binding for global variable - ‘coord’ - Undefined global functions or variables: - VAF chr chrom_index coef combn coord copy_number cumsum_values dist - genotype hclust lm melt mode_cnv n n_gt na.omit px px_width sc_id - setNames show_warnings single_cell_id site timepoint - Consider adding - importFrom("stats", "coef", "dist", "hclust", "lm", "na.omit", - "setNames") - importFrom("utils", "combn") - to your NAMESPACE file. - ``` - -* checking for unstated dependencies in vignettes ... NOTE - ``` - '::' or ':::' import not declared from: ‘BiocManager’ - 'library' or 'require' calls not declared from: - ‘BiocManager’ ‘devtools’ - ``` - -# chromoMap - -
- -* Version: 0.2 -* GitHub: NA -* Source code: https://github.com/cran/chromoMap -* Date/Publication: 2019-04-10 19:27:11 UTC -* Number of recursive dependencies: 32 - -Run `revdep_details(, "chromoMap")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘htmltools’ - All declared Imports should be used. - ``` - -# D3partitionR - -
- -* Version: 0.5.0 -* GitHub: NA -* Source code: https://github.com/cran/D3partitionR -* Date/Publication: 2017-10-07 14:36:03 UTC -* Number of recursive dependencies: 12 - -Run `revdep_details(, "D3partitionR")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘titanic’ - All declared Imports should be used. - ``` - -# d3Tree - -
- -* Version: 0.2.0 -* GitHub: https://github.com/metrumresearchgroup/d3Tree -* Source code: https://github.com/cran/d3Tree -* Date/Publication: 2017-06-13 20:35:10 UTC -* Number of recursive dependencies: 50 - -Run `revdep_details(, "d3Tree")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘magrittr’ - All declared Imports should be used. - ``` - -# datadigest - -
- -* Version: 1.0.2 -* GitHub: https://github.com/RhoInc/datadigest -* Source code: https://github.com/cran/datadigest -* Date/Publication: 2018-09-03 11:10:06 UTC -* Number of recursive dependencies: 92 - -Run `revdep_details(, "datadigest")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘miniUI’ - All declared Imports should be used. - ``` - -# DataVisualizations - -
- -* Version: 1.2.0 -* GitHub: https://github.com/Mthrun/DataVisualizations -* Source code: https://github.com/cran/DataVisualizations -* Date/Publication: 2020-08-04 16:34:11 UTC -* Number of recursive dependencies: 160 - -Run `revdep_details(, "DataVisualizations")` for more info - -
- -## In both - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘FCPS’ - ``` - -# DiagrammeR - -
- -* Version: 1.0.6.1 -* GitHub: https://github.com/rich-iannone/DiagrammeR -* Source code: https://github.com/cran/DiagrammeR -* Date/Publication: 2020-05-08 21:40:02 UTC -* Number of recursive dependencies: 87 - -Run `revdep_details(, "DiagrammeR")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 14.1Mb - sub-directories of 1Mb or more: - doc 9.7Mb - htmlwidgets 2.8Mb - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 1 marked UTF-8 string - ``` - -# dsa - -
- -* Version: 0.74.18 -* GitHub: NA -* Source code: https://github.com/cran/dsa -* Date/Publication: 2020-04-15 14:40:02 UTC -* Number of recursive dependencies: 78 - -Run `revdep_details(, "dsa")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘rJava’ ‘tools’ ‘xtable’ - All declared Imports should be used. - ``` - -# EBImage - -
- -* Version: 4.30.0 -* GitHub: https://github.com/aoles/EBImage -* Source code: https://github.com/cran/EBImage -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 45 - -Run `revdep_details(, "EBImage")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 7.6Mb - sub-directories of 1Mb or more: - doc 5.1Mb - images 1.7Mb - ``` - -# EGSEA - -
- -* Version: 1.16.0 -* GitHub: NA -* Source code: https://github.com/cran/EGSEA -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 184 - -Run `revdep_details(, "EGSEA")` for more info - -
- -## In both - -* checking R code for possible problems ... NOTE - ``` - buildGeneSetDBIdx: no visible binding for global variable ‘GOTERM’ - buildMSigDBIdx: no visible binding for global variable ‘msigdb’ - generateSummaryPlots: no visible binding for global variable ‘x.data’ - generateSummaryPlots: no visible binding for global variable ‘y.data’ - generateSummaryPlots: no visible binding for global variable ‘gsSize’ - generateSummaryPlots: no visible binding for global variable ‘id’ - generateSummaryPlots: no visible binding for global variable ‘sig’ - loadKeggData: no visible binding for global variable ‘kegg.pathways’ - Undefined global functions or variables: - GOTERM gsSize id kegg.pathways msigdb sig x.data y.data - ``` - -# EML - -
- -* Version: 2.0.3 -* GitHub: https://github.com/ropensci/EML -* Source code: https://github.com/cran/EML -* Date/Publication: 2020-07-23 04:43:06 UTC -* Number of recursive dependencies: 94 - -Run `revdep_details(, "EML")` for more info - -
- -## In both - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘EML’ - ``` - -# epiflows - -
- -* Version: 0.2.0 -* GitHub: https://github.com/reconhub/epiflows -* Source code: https://github.com/cran/epiflows -* Date/Publication: 2018-08-14 12:40:03 UTC -* Number of recursive dependencies: 130 - -Run `revdep_details(, "epiflows")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘htmlwidgets’ - All declared Imports should be used. - ``` - -# g3viz - -
- -* Version: 1.1.3 -* GitHub: https://github.com/G3viz/g3viz -* Source code: https://github.com/cran/g3viz -* Date/Publication: 2020-08-27 04:00:03 UTC -* Number of recursive dependencies: 57 - -Run `revdep_details(, "g3viz")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 10.6Mb - sub-directories of 1Mb or more: - doc 9.3Mb - ``` - -# GeneNetworkBuilder - -
- -* Version: 1.30.0 -* GitHub: NA -* Source code: https://github.com/cran/GeneNetworkBuilder -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 74 - -Run `revdep_details(, "GeneNetworkBuilder")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 11.6Mb - sub-directories of 1Mb or more: - data 2.8Mb - doc 6.5Mb - htmlwidgets 1.8Mb - ``` - -# GenEst - -
- -* Version: 1.4.4 -* GitHub: NA -* Source code: https://github.com/cran/GenEst -* Date/Publication: 2020-06-08 18:20:03 UTC -* Number of recursive dependencies: 84 - -Run `revdep_details(, "GenEst")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘htmlwidgets’ - All declared Imports should be used. - ``` - -# hchinamap - -
- -* Version: 0.1.0 -* GitHub: https://github.com/czxa/hchinamap -* Source code: https://github.com/cran/hchinamap -* Date/Publication: 2019-08-23 08:50:02 UTC -* Number of recursive dependencies: 76 - -Run `revdep_details(, "hchinamap")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.5Mb - sub-directories of 1Mb or more: - doc 2.7Mb - htmlwidgets 2.8Mb - ``` - -# heatmaply - -
- -* Version: 1.1.1 -* GitHub: https://github.com/talgalili/heatmaply -* Source code: https://github.com/cran/heatmaply -* Date/Publication: 2020-08-25 06:40:12 UTC -* Number of recursive dependencies: 102 - -Run `revdep_details(, "heatmaply")` for more info - -
- -## In both - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 189 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 56 ] - 1. Error: heatmaply mtcars (both dend) (@test_heatmaply.R#6) - 2. Error: heatmaply mtcars (no dend) (@test_heatmaply.R#14) - 3. Error: heatmaply mtcars (coldend only) (@test_heatmaply.R#22) - 4. Error: heatmaply mtcars (rowdend only) (@test_heatmaply.R#30) - 5. Error: heatmaply mtcars (rscols, both dend) (@test_heatmaply.R#39) - 6. Error: heatmaply mtcars (rscols, row dend) (@test_heatmaply.R#49) - 7. Error: heatmaply mtcars (rscols, row dend) (@test_heatmaply.R#59) - 8. Error: heatmaply mtcars (rscols, no dends) (@test_heatmaply.R#69) - 9. Error: heatmaply mtcars (cscols, both dend) (@test_heatmaply.R#78) - 1. ... - - Error: testthat unit tests failed - Execution halted - ``` - -* checking installed package size ... NOTE - ``` - installed size is 5.4Mb - sub-directories of 1Mb or more: - doc 5.0Mb - ``` - -# hwordcloud - -
- -* Version: 0.1.0 -* GitHub: https://github.com/czxa/hwordcloud -* Source code: https://github.com/cran/hwordcloud -* Date/Publication: 2019-08-07 04:50:02 UTC -* Number of recursive dependencies: 73 - -Run `revdep_details(, "hwordcloud")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘colourpicker’ ‘shiny’ ‘wordcloud2’ - All declared Imports should be used. - ``` - -# INDperform - -
- -* Version: 0.2.2 -* GitHub: https://github.com/SaskiaAOtto/INDperform -* Source code: https://github.com/cran/INDperform -* Date/Publication: 2020-01-09 12:30:14 UTC -* Number of recursive dependencies: 86 - -Run `revdep_details(, "INDperform")` for more info - -
- -## In both - -* checking examples ... ERROR - ``` - Running examples in ‘INDperform-Ex.R’ failed - The error most likely occurred in: - - > ### Name: merge_models - > ### Title: Merging two model output tibbles. - > ### Aliases: merge_models - > - > ### ** Examples - > - > # Using some models of the Baltic Sea demo data: - > # Merging GAM and GAMM tibbles - > test_ids <- 47:50 # choose subset - > gam_tbl <- model_gam_ex[test_ids,] - > gamm_tbl <- model_gamm(ind_init_ex[test_ids,], filter= gam_tbl$tac) - Error in model_gamm(ind_init_ex[test_ids, ], filter = gam_tbl$tac) : - No IND~pressure GAMM could be fitted! Check if you chose the correct error distribution (default is gaussian()). - Execution halted - ``` - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - Assigned data `"x < 0.3"` must be compatible with existing data. - ℹ Error occurred for column `condition`. - ✖ Can't convert to . - Backtrace: - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 474 | SKIPPED: 0 | WARNINGS: 10 | FAILED: 5 ] - 1. Error: (unknown) (@test_calc_deriv.R#6) - 2. Error: (unknown) (@test_cond_boot.R#112) - 3. Failure: test class and value of get_sum_output (@test_get_sum_output.R#24) - 4. Error: (unknown) (@test_model_gamm.R#4) - 5. Error: (unknown) (@test_scoring.R#15) - - Error: testthat unit tests failed - Execution halted - ``` - -* checking installed package size ... NOTE - ``` - installed size is 5.1Mb - sub-directories of 1Mb or more: - data 3.1Mb - help 1.6Mb - ``` - -# KDViz - -
- -* Version: 1.3.1 -* GitHub: NA -* Source code: https://github.com/cran/KDViz -* Date/Publication: 2019-01-13 17:00:03 UTC -* Number of recursive dependencies: 43 - -Run `revdep_details(, "KDViz")` for more info - -
- -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 11 marked UTF-8 strings - ``` - -# leaflet.extras2 - -
- -* Version: 1.0.0 -* GitHub: https://github.com/trafficonese/leaflet.extras2 -* Source code: https://github.com/cran/leaflet.extras2 -* Date/Publication: 2020-05-18 15:10:06 UTC -* Number of recursive dependencies: 90 - -Run `revdep_details(, "leaflet.extras2")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘htmlwidgets’ - All declared Imports should be used. - ``` - -# leafpm - -
- -* Version: 0.1.0 -* GitHub: https://github.com/r-spatial/leafpm -* Source code: https://github.com/cran/leafpm -* Date/Publication: 2019-03-13 12:10:03 UTC -* Number of recursive dependencies: 74 - -Run `revdep_details(, "leafpm")` for more info - -
- -## In both - -* checking package dependencies ... NOTE - ``` - Packages which this enhances but not available for checking: - 'geojsonio', 'mapedit', 'mapview' - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘dplyr’ ‘htmlwidgets’ ‘jsonlite’ ‘sf’ - All declared Imports should be used. - ``` - -# leafsync - -
- -* Version: 0.1.0 -* GitHub: https://github.com/r-spatial/leafsync -* Source code: https://github.com/cran/leafsync -* Date/Publication: 2019-03-05 15:10:03 UTC -* Number of recursive dependencies: 63 - -Run `revdep_details(, "leafsync")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘leaflet’ - All declared Imports should be used. - ``` - -# mapdeck - -
- -* Version: 0.3.4 -* GitHub: https://github.com/SymbolixAU/mapdeck -* Source code: https://github.com/cran/mapdeck -* Date/Publication: 2020-09-04 05:22:10 UTC -* Number of recursive dependencies: 75 - -Run `revdep_details(, "mapdeck")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 8.4Mb - sub-directories of 1Mb or more: - data 1.3Mb - doc 1.6Mb - htmlwidgets 2.2Mb - libs 2.9Mb - ``` - -# mapedit - -
- -* Version: 0.6.0 -* GitHub: https://github.com/r-spatial/mapedit -* Source code: https://github.com/cran/mapedit -* Date/Publication: 2020-02-02 17:20:02 UTC -* Number of recursive dependencies: 100 - -Run `revdep_details(, "mapedit")` for more info - -
- -## In both - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘geojsonio’ - ``` - -# mapscape - -
- -* Version: 1.12.0 -* GitHub: NA -* Source code: https://github.com/cran/mapscape -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 19 - -Run `revdep_details(, "mapscape")` for more info - -
- -## In both - -* checking Rd files ... WARNING - ``` - man/mapscape.Rd: non-ASCII input and no declared encoding - problem found in ‘mapscape.Rd’ - ``` - -* checking installed package size ... NOTE - ``` - installed size is 6.6Mb - sub-directories of 1Mb or more: - doc 4.0Mb - extdata 1.6Mb - ``` - -# mdsr - -
- -* Version: 0.2.0 -* GitHub: https://github.com/beanumber/mdsr -* Source code: https://github.com/cran/mdsr -* Date/Publication: 2020-09-03 22:32:09 UTC -* Number of recursive dependencies: 129 - -Run `revdep_details(, "mdsr")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 6.7Mb - sub-directories of 1Mb or more: - data 6.5Mb - ``` - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 2866 marked UTF-8 strings - ``` - -# MetaVolcanoR - -
- -* Version: 1.2.0 -* GitHub: NA -* Source code: https://github.com/cran/MetaVolcanoR -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 108 - -Run `revdep_details(, "MetaVolcanoR")` for more info - -
- -## In both - -* checking examples ... ERROR - ``` - ... - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Warning in metap::sumlog(value) : Must have at least two valid p values - Error: .onLoad failed in loadNamespace() for 'Cairo', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so': - dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so, 6): Symbol not found: _EXTPTR_PTR - Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Expected in: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib - in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Execution halted - ``` - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - 7. plotly:::ggplotly.ggplot(gg) - 8. plotly::gg2list(...) - 9. Cairo::Cairo - 10. base::getExportedValue(pkg, name) - 11. base::asNamespace(ns) - 12. base::getNamespace(ns) - 13. base::loadNamespace(name) - 14. base:::runHook(".onLoad", env, package.lib, package) - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 0 | SKIPPED: 0 | WARNINGS: 2 | FAILED: 1 ] - 1. Error: MetaVolcano outputs are MetaVolcano valid objects (@test_mv.R#7) - - Error: testthat unit tests failed - Execution halted - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - plot_rem: no visible binding for global variable ‘randomCi.lb’ - plot_rem: no visible binding for global variable ‘randomSummary’ - plot_rem: no visible binding for global variable ‘randomP’ - plot_rem: no visible binding for global variable ‘signcon2’ - plot_rem: no visible binding for global variable ‘Ci.ub’ - plot_rem: no visible binding for global variable ‘Ci.lb’ - rem_mv: no visible binding for global variable ‘error’ - rem_mv: no visible binding for global variable ‘randomCi.ub’ - rem_mv: no visible binding for global variable ‘randomCi.lb’ - rem_mv: no visible binding for global variable ‘index’ - rem_mv: no visible global function definition for ‘head’ - votecount_mv: no visible binding for global variable ‘ddeg’ - votecount_mv: no visible binding for global variable ‘ndeg’ - votecount_mv: no visible binding for global variable ‘idx’ - Undefined global functions or variables: - Ci.lb Ci.ub DEGs Regulation dataset ddeg degcomb degvcount error - group head idx index metap ndatasets ndeg randomCi.lb randomCi.ub - randomP randomSummary signcon signcon2 study value - Consider adding - importFrom("utils", "head") - to your NAMESPACE file. - ``` - -* checking for unstated dependencies in vignettes ... NOTE - ``` - '::' or ':::' import not declared from: ‘BiocManager’ - ``` - -# motifStack - -
- -* Version: 1.32.1 -* GitHub: NA -* Source code: https://github.com/cran/motifStack -* Date/Publication: 2020-08-03 -* Number of recursive dependencies: 108 - -Run `revdep_details(, "motifStack")` for more info - -
- -## In both - -* checking package dependencies ... ERROR - ``` - Package required but not available: ‘MotIV’ - - See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ - manual. - ``` - -# pairsD3 - -
- -* Version: 0.1.0 -* GitHub: https://github.com/garthtarr/pairsD3 -* Source code: https://github.com/cran/pairsD3 -* Date/Publication: 2015-04-28 06:58:01 -* Number of recursive dependencies: 30 - -Run `revdep_details(, "pairsD3")` for more info - -
- -## In both - -* checking R code for possible problems ... NOTE - ``` - pairsD3: no visible global function definition for ‘gray.colors’ - Undefined global functions or variables: - gray.colors - Consider adding - importFrom("grDevices", "gray.colors") - to your NAMESPACE file. - ``` - -# parcats - -
- -* Version: 0.0.2 -* GitHub: NA -* Source code: https://github.com/cran/parcats -* Date/Publication: 2020-09-09 06:50:02 UTC -* Number of recursive dependencies: 110 - -Run `revdep_details(, "parcats")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘magrittr’ ‘tibble’ - All declared Imports should be used. - ``` - -# parlitools - -
- -* Version: 0.4.1 -* GitHub: https://github.com/EvanOdell/parlitools -* Source code: https://github.com/cran/parlitools -* Date/Publication: 2020-01-12 22:00:02 UTC -* Number of recursive dependencies: 122 - -Run `revdep_details(, "parlitools")` for more info - -
- -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 16 marked UTF-8 strings - ``` - -# PathwaySplice - -
- -* Version: 1.11.0 -* GitHub: NA -* Source code: https://github.com/cran/PathwaySplice -* Date/Publication: 2019-10-29 -* Number of recursive dependencies: 202 - -Run `revdep_details(, "PathwaySplice")` for more info - -
- -## In both - -* checking package dependencies ... ERROR - ``` - Package required but not available: ‘JunctionSeq’ - - See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ - manual. - ``` - -# piano - -
- -* Version: 2.4.0 -* GitHub: https://github.com/varemo/piano -* Source code: https://github.com/cran/piano -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 143 - -Run `revdep_details(, "piano")` for more info - -
- -## In both - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘rsbml’ - ``` - -* checking Rd cross-references ... NOTE - ``` - Packages unavailable to check Rd xrefs: ‘PGSEA’, ‘samr’, ‘GSA’ - Unknown package ‘HTSanalyzeR’ in Rd xrefs - ``` - -# pivottabler - -
- -* Version: 1.5.0 -* GitHub: https://github.com/cbailiss/pivottabler -* Source code: https://github.com/cran/pivottabler -* Date/Publication: 2020-06-16 16:20:03 UTC -* Number of recursive dependencies: 79 - -Run `revdep_details(, "pivottabler")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.2Mb - sub-directories of 1Mb or more: - R 2.0Mb - data 2.0Mb - ``` - -# pkgdown - -
- -* Version: 1.6.1 -* GitHub: https://github.com/r-lib/pkgdown -* Source code: https://github.com/cran/pkgdown -* Date/Publication: 2020-09-12 05:50:26 UTC -* Number of recursive dependencies: 90 - -Run `revdep_details(, "pkgdown")` for more info - -
- -## In both - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - nrow(out) not equal to 1. - 1/1 mismatches - [1] 0 - 1 == -1 - - ── 2. Failure: can autodetect published tutorials (@test-tutorials.R#31) ────── - out$name not equal to "test-1". - Lengths differ: 0 is not 1 - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 364 | SKIPPED: 19 | WARNINGS: 0 | FAILED: 2 ] - 1. Failure: can autodetect published tutorials (@test-tutorials.R#30) - 2. Failure: can autodetect published tutorials (@test-tutorials.R#31) - - Error: testthat unit tests failed - Execution halted - ``` - -# Plasmidprofiler - -
- -* Version: 0.1.6 -* GitHub: NA -* Source code: https://github.com/cran/Plasmidprofiler -* Date/Publication: 2017-01-06 01:10:47 -* Number of recursive dependencies: 91 - -Run `revdep_details(, "Plasmidprofiler")` for more info - -
- -## In both - -* checking examples ... ERROR - ``` - ... - + length.filter=10000, - + main.title="Example Results") - Selecting by pident - Warning: `data_frame()` is deprecated as of tibble 1.1.0. - Please use `tibble()` instead. - This warning is displayed once every 8 hours. - Call `lifecycle::last_warnings()` to see where this warning was generated. - Warning: Vectorized input to `element_text()` is not officially supported. - Results may be unexpected or may change in future versions of ggplot2. - Saving 12 x 7 in image - Warning: Vectorized input to `element_text()` is not officially supported. - Results may be unexpected or may change in future versions of ggplot2. - Warning: Ignoring unknown aesthetics: label, text - Error: .onLoad failed in loadNamespace() for 'Cairo', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so': - dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so, 6): Symbol not found: _EXTPTR_PTR - Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Expected in: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib - in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Execution halted - ``` - -# plotly - -
- -* Version: 4.9.2.1 -* GitHub: https://github.com/ropensci/plotly -* Source code: https://github.com/cran/plotly -* Date/Publication: 2020-04-04 19:50:02 UTC -* Number of recursive dependencies: 150 - -Run `revdep_details(, "plotly")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 6.6Mb - sub-directories of 1Mb or more: - htmlwidgets 3.7Mb - ``` - -# processanimateR - -
- -* Version: 1.0.3 -* GitHub: https://github.com/bupaverse/processanimateR -* Source code: https://github.com/cran/processanimateR -* Date/Publication: 2020-03-13 21:30:02 UTC -* Number of recursive dependencies: 105 - -Run `revdep_details(, "processanimateR")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 11.5Mb - sub-directories of 1Mb or more: - doc 8.8Mb - htmlwidgets 2.5Mb - ``` - -# RagGrid - -
- -* Version: 0.2.0 -* GitHub: https://github.com/no-types/RagGrid -* Source code: https://github.com/cran/RagGrid -* Date/Publication: 2018-08-12 09:30:03 UTC -* Number of recursive dependencies: 34 - -Run `revdep_details(, "RagGrid")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘knitr’ - All declared Imports should be used. - ``` - -# rAmCharts - -
- -* Version: 2.1.13 -* GitHub: https://github.com/datastorm-open/rAmCharts -* Source code: https://github.com/cran/rAmCharts -* Date/Publication: 2019-12-06 15:50:05 UTC -* Number of recursive dependencies: 53 - -Run `revdep_details(, "rAmCharts")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 11.8Mb - sub-directories of 1Mb or more: - api 3.1Mb - htmlwidgets 7.0Mb - ``` - -# rAmCharts4 - -
- -* Version: 0.1.0 -* GitHub: https://github.com/stla/rAmCharts4 -* Source code: https://github.com/cran/rAmCharts4 -* Date/Publication: 2020-08-24 15:40:03 UTC -* Number of recursive dependencies: 32 - -Run `revdep_details(, "rAmCharts4")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 10.8Mb - sub-directories of 1Mb or more: - htmlwidgets 9.4Mb - super-tiny-icons 1.0Mb - ``` - -# rbokeh - -
- -* Version: 0.5.1 -* GitHub: https://github.com/bokeh/rbokeh -* Source code: https://github.com/cran/rbokeh -* Date/Publication: 2020-05-26 20:10:08 UTC -* Number of recursive dependencies: 92 - -Run `revdep_details(, "rbokeh")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘ggplot2’ - All declared Imports should be used. - ``` - -# rgeoprofile - -
- -* Version: 0.2.0 -* GitHub: NA -* Source code: https://github.com/cran/rgeoprofile -* Date/Publication: 2020-05-28 19:20:06 UTC -* Number of recursive dependencies: 100 - -Run `revdep_details(, "rgeoprofile")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘leaflet’ ‘pals’ ‘raster’ ‘sp’ - All declared Imports should be used. - ``` - -# rgl - -
- -* Version: 0.100.54 -* GitHub: NA -* Source code: https://github.com/cran/rgl -* Date/Publication: 2020-04-14 14:40:02 UTC -* Number of recursive dependencies: 61 - -Run `revdep_details(, "rgl")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 7.7Mb - sub-directories of 1Mb or more: - doc 3.6Mb - fonts 1.5Mb - ``` - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘heplots’ - ``` - -# rhandsontable - -
- -* Version: 0.3.7 -* GitHub: https://github.com/jrowen/rhandsontable -* Source code: https://github.com/cran/rhandsontable -* Date/Publication: 2018-11-20 05:50:03 UTC -* Number of recursive dependencies: 34 - -Run `revdep_details(, "rhandsontable")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 11.5Mb - sub-directories of 1Mb or more: - doc 10.2Mb - htmlwidgets 1.2Mb - ``` - -# RKorAPClient - -
- -* Version: 0.5.9 -* GitHub: NA -* Source code: https://github.com/cran/RKorAPClient -* Date/Publication: 2020-06-07 23:10:02 UTC -* Number of recursive dependencies: 115 - -Run `revdep_details(, "RKorAPClient")` for more info - -
- -## In both - -* checking examples ... ERROR - ``` - ... - > ## End(Don't show) - > condition <- c("textDomain = /Wirtschaft.*/") - > ## End(Don't show) - > g <- expand_grid(condition, year) %>% - + cbind(frequencyQuery(kco, "[tt/l=Heuschrecke]", - + paste0(.$condition," & pubDate in ", .$year))) %>% - + ipm() %>% - + ggplot(aes(year, ipm, fill = condition, color = condition)) + - + ## theme_light(base_size = 20) + - + geom_freq_by_year_ci() - Searching "[tt/l=Heuschrecke]" in "textDomain = /Wirtschaft.*/ & pubDate in 2005" took 4.794922901 s - Getting size of virtual corpus "textDomain = /Wirtschaft.*/ & pubDate in 2005": 35980430 tokens - > p <- ggplotly(g) - Error: .onLoad failed in loadNamespace() for 'Cairo', details: - call: dyn.load(file, DLLpath = DLLpath, ...) - error: unable to load shared object '/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so': - dlopen(/Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so, 6): Symbol not found: _EXTPTR_PTR - Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Expected in: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib - in /Library/Frameworks/R.framework/Versions/4.0/Resources/library/Cairo/libs/Cairo.so - Execution halted - ``` - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - 3. plotly:::ggplotly.ggplot(p = p, tooltip = tooltip, ...) - 4. plotly::gg2list(...) - 5. Cairo::Cairo - 6. base::getExportedValue(pkg, name) - 7. base::asNamespace(ns) - 8. base::getNamespace(ns) - 9. base::loadNamespace(name) - 10. base:::runHook(".onLoad", env, package.lib, package) - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 30 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] - 1. Error: Conditions over time ggplotly example works (@test-demos.R#140) - - Error: testthat unit tests failed - Execution halted - ``` - -# rosr - -
- -* Version: 0.0.10 -* GitHub: https://github.com/pzhaonet/rosr -* Source code: https://github.com/cran/rosr -* Date/Publication: 2020-05-11 11:10:02 UTC -* Number of recursive dependencies: 91 - -Run `revdep_details(, "rosr")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘bookdown’ ‘rstudioapi’ ‘tinytex’ - All declared Imports should be used. - ``` - -# safetyGraphics - -
- -* Version: 1.1.0 -* GitHub: https://github.com/SafetyGraphics/safetyGraphics -* Source code: https://github.com/cran/safetyGraphics -* Date/Publication: 2020-01-15 22:50:05 UTC -* Number of recursive dependencies: 103 - -Run `revdep_details(, "safetyGraphics")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘shinybusy’ - All declared Imports should be used. - ``` - -# shiny.semantic - -
- -* Version: 0.4.0 -* GitHub: https://github.com/Appsilon/shiny.semantic -* Source code: https://github.com/cran/shiny.semantic -* Date/Publication: 2020-09-07 12:30:03 UTC -* Number of recursive dependencies: 72 - -Run `revdep_details(, "shiny.semantic")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 10.7Mb - sub-directories of 1Mb or more: - help 2.5Mb - www 8.0Mb - ``` - -# shinyaframe - -
- -* Version: 1.0.1 -* GitHub: NA -* Source code: https://github.com/cran/shinyaframe -* Date/Publication: 2017-11-26 15:29:43 UTC -* Number of recursive dependencies: 53 - -Run `revdep_details(, "shinyaframe")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘shiny’ - All declared Imports should be used. - ``` - -# sigmajs - -
- -* Version: 0.1.5 -* GitHub: https://github.com/JohnCoene/sigmajs -* Source code: https://github.com/cran/sigmajs -* Date/Publication: 2020-06-18 18:10:02 UTC -* Number of recursive dependencies: 62 - -Run `revdep_details(, "sigmajs")` for more info - -
- -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 28 marked UTF-8 strings - ``` - -# slickR - -
- -* Version: 0.4.9 -* GitHub: https://github.com/metrumresearchgroup/slickR -* Source code: https://github.com/cran/slickR -* Date/Publication: 2020-02-14 13:30:02 UTC -* Number of recursive dependencies: 84 - -Run `revdep_details(, "slickR")` for more info - -
- -## In both - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - > library(slickR) - > - > test_check("slickR") - ── 1. Failure: slick div method: widget (@test-div_method.R#44) ─────────────── - { - ... - } not equal to readRDS("../assets/slick_div_widget.Rds"). - Component "attribs": Component "srcdoc": 1 string mismatch - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 27 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 1 ] - 1. Failure: slick div method: widget (@test-div_method.R#44) - - Error: testthat unit tests failed - Execution halted - ``` - -# slideview - -
- -* Version: 0.1.0 -* GitHub: NA -* Source code: https://github.com/cran/slideview -* Date/Publication: 2019-03-06 15:00:03 UTC -* Number of recursive dependencies: 13 - -Run `revdep_details(, "slideview")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘viridisLite’ - All declared Imports should be used. - ``` - -# SpatialEpiApp - -
- -* Version: 0.3 -* GitHub: https://github.com/Paula-Moraga/SpatialEpiApp -* Source code: https://github.com/cran/SpatialEpiApp -* Date/Publication: 2017-08-28 22:10:33 UTC -* Number of recursive dependencies: 117 - -Run `revdep_details(, "SpatialEpiApp")` for more info - -
- -## In both - -* checking package dependencies ... NOTE - ``` - Package suggested but not available for checking: ‘INLA’ - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘RColorBrewer’ ‘SpatialEpi’ ‘dplyr’ ‘dygraphs’ ‘ggplot2’ - ‘htmlwidgets’ ‘knitr’ ‘leaflet’ ‘mapproj’ ‘maptools’ ‘rgdal’ ‘rgeos’ - ‘rmarkdown’ ‘shinyjs’ ‘spdep’ ‘xts’ - All declared Imports should be used. - ``` - -# spinifex - -
- -* Version: 0.2.5 -* GitHub: https://github.com/nspyrison/spinifex -* Source code: https://github.com/cran/spinifex -* Date/Publication: 2020-07-14 13:10:06 UTC -* Number of recursive dependencies: 95 - -Run `revdep_details(, "spinifex")` for more info - -
- -## In both - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - 6. base::getExportedValue(pkg, name) - 7. base::asNamespace(ns) - 8. base::getNamespace(ns) - 9. base::loadNamespace(name) - 10. base:::runHook(".onLoad", env, package.lib, package) - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 38 | SKIPPED: 0 | WARNINGS: 0 | FAILED: 4 ] - 1. Error: (unknown) (@test-play_manual_tour.R#6) - 2. Error: (unknown) (@test-play_tour_path.R#6) - 3. Error: (unknown) (@test-render_gganimate.R#8) - 4. Error: (unknown) (@test-render_plotly.R#8) - - Error: testthat unit tests failed - Execution halted - ``` - -# sRACIPE - -
- -* Version: 1.4.0 -* GitHub: https://github.com/vivekkohar/sRACIPE -* Source code: https://github.com/cran/sRACIPE -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 101 - -Run `revdep_details(, "sRACIPE")` for more info - -
- -## In both - -* checking R code for possible problems ... NOTE - ``` - sracipeSimulate: no visible global function definition for - ‘registerDoFuture’ - sracipeSimulate: no visible global function definition for ‘plan’ - sracipeSimulate: no visible global function definition for ‘%dopar%’ - sracipeSimulate: no visible global function definition for ‘foreach’ - sracipeSimulate: no visible binding for global variable - ‘configurationTmp’ - sracipeSimulate: no visible binding for global variable ‘outFileGETmp’ - sracipeSimulate: no visible binding for global variable - ‘outFileParamsTmp’ - sracipeSimulate: no visible binding for global variable ‘outFileICTmp’ - Undefined global functions or variables: - %dopar% configurationTmp foreach outFileGETmp outFileICTmp - outFileParamsTmp plan registerDoFuture - ``` - -# stringr - -
- -* Version: 1.4.0 -* GitHub: https://github.com/tidyverse/stringr -* Source code: https://github.com/cran/stringr -* Date/Publication: 2019-02-10 03:40:03 UTC -* Number of recursive dependencies: 45 - -Run `revdep_details(, "stringr")` for more info - -
- -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 3 marked UTF-8 strings - ``` - -# svgPanZoom - -
- -* Version: 0.3.4 -* GitHub: https://github.com/timelyportfolio/svgPanZoom -* Source code: https://github.com/cran/svgPanZoom -* Date/Publication: 2020-02-15 21:20:02 UTC -* Number of recursive dependencies: 13 - -Run `revdep_details(, "svgPanZoom")` for more info - -
- -## In both - -* checking package dependencies ... NOTE - ``` - Package which this enhances but not available for checking: ‘gridSVG’ - ``` - -# timescape - -
- -* Version: 1.8.0 -* GitHub: NA -* Source code: https://github.com/cran/timescape -* Date/Publication: 2019-05-02 -* Number of recursive dependencies: 36 - -Run `revdep_details(, "timescape")` for more info - -
- -## In both - -* checking Rd \usage sections ... WARNING - ``` - Duplicated \argument entries in documentation object 'timescapeOutput': - ‘width’ ‘height’ ‘mutations’ ‘height’ ‘width’ ‘clonal_prev’ - ‘tree_edges’ ‘alpha’ ‘clonal_prev’ ‘tree_edges’ ‘genotype_position’ - ‘clone_colours’ ‘perturbations’ ‘mutations’ ‘tree_edges’ - ‘clonal_prev’ ‘clonal_prev’ ‘tree_edges’ ‘clone_colours’ ‘mutations’ - - Functions with \usage entries need to have the appropriate \alias - entries, and all their arguments documented. - The \usage entries must correspond to syntactically valid R code. - See chapter ‘Writing R documentation files’ in the ‘Writing R - Extensions’ manual. - ``` - -* checking for hidden files and directories ... NOTE - ``` - Found the following hidden files and directories: - .vscode - These were most likely included in error. See section ‘Package - structure’ in the ‘Writing R Extensions’ manual. - ``` - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘dplyr’ ‘gtools’ - All declared Imports should be used. - ``` - -* checking R code for possible problems ... NOTE - ``` - getMutationsData: no visible binding for global variable - ‘show_warnings’ - Undefined global functions or variables: - show_warnings - ``` - -# timevis - -
- -* Version: 1.0.0 -* GitHub: https://github.com/daattali/timevis -* Source code: https://github.com/cran/timevis -* Date/Publication: 2020-09-16 08:10:02 UTC -* Number of recursive dependencies: 58 - -Run `revdep_details(, "timevis")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘lubridate’ - All declared Imports should be used. - ``` - -# trackViewer - -
- -* Version: 1.24.2 -* GitHub: NA -* Source code: https://github.com/cran/trackViewer -* Date/Publication: 2020-08-27 -* Number of recursive dependencies: 146 - -Run `revdep_details(, "trackViewer")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 9.7Mb - sub-directories of 1Mb or more: - doc 7.8Mb - ``` - -* checking R code for possible problems ... NOTE - ``` - plotGInteractions: no visible global function definition for - 'plot.default' - Undefined global functions or variables: - plot.default - Consider adding - importFrom("graphics", "plot.default") - to your NAMESPACE file. - ``` - -# treespace - -
- -* Version: 1.1.3.2 -* GitHub: https://github.com/thibautjombart/treespace -* Source code: https://github.com/cran/treespace -* Date/Publication: 2019-12-08 22:40:02 UTC -* Number of recursive dependencies: 174 - -Run `revdep_details(, "treespace")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 5.9Mb - sub-directories of 1Mb or more: - doc 4.3Mb - ``` - -# trelliscopejs - -
- -* Version: 0.2.5 -* GitHub: https://github.com/hafen/trelliscopejs -* Source code: https://github.com/cran/trelliscopejs -* Date/Publication: 2020-05-28 11:20:03 UTC -* Number of recursive dependencies: 91 - -Run `revdep_details(, "trelliscopejs")` for more info - -
- -## In both - -* checking tests ... - ``` - ERROR - Running the tests in ‘tests/testthat.R’ failed. - Last 13 lines of output: - 15. plotly:::ggplotly.ggplot(...) - 16. plotly::gg2list(...) - 17. Cairo::Cairo - 18. base::getExportedValue(pkg, name) - 19. base::asNamespace(ns) - 20. base::getNamespace(ns) - 21. base::loadNamespace(name) - 22. base:::runHook(".onLoad", env, package.lib, package) - - ══ testthat results ═══════════════════════════════════════════════════════════ - [ OK: 0 | SKIPPED: 0 | WARNINGS: 4 | FAILED: 1 ] - 1. Error: examples run without barfing (@test-trelliscope.R#161) - - Error: testthat unit tests failed - Execution halted - ``` - -# uavRmp - -
- -* Version: 0.5.7 -* GitHub: https://github.com/gisma/uavRmp -* Source code: https://github.com/cran/uavRmp -* Date/Publication: 2020-07-03 16:40:03 UTC -* Number of recursive dependencies: 134 - -Run `revdep_details(, "uavRmp")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘rlang’ - All declared Imports should be used. - ``` - -# ursa - -
- -* Version: 3.8.20 -* GitHub: https://github.com/nplatonov/ursa -* Source code: https://github.com/cran/ursa -* Date/Publication: 2020-06-12 09:10:06 UTC -* Number of recursive dependencies: 109 - -Run `revdep_details(, "ursa")` for more info - -
- -## In both - -* checking Rd cross-references ... NOTE - ``` - Package unavailable to check Rd xrefs: ‘rje’ - ``` - -# vdiffr - -
- -* Version: 0.3.2.2 -* GitHub: https://github.com/r-lib/vdiffr -* Source code: https://github.com/cran/vdiffr -* Date/Publication: 2020-07-07 06:11:10 UTC -* Number of recursive dependencies: 104 - -Run `revdep_details(, "vdiffr")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespace in Imports field not imported from: ‘freetypeharfbuzz’ - All declared Imports should be used. - ``` - -# ViSEAGO - -
- -* Version: 1.2.0 -* GitHub: NA -* Source code: https://github.com/cran/ViSEAGO -* Date/Publication: 2020-04-27 -* Number of recursive dependencies: 149 - -Run `revdep_details(, "ViSEAGO")` for more info - -
- -## In both - -* checking dependencies in R code ... WARNING - ``` - 'library' or 'require' call not declared from: ‘topGO’ - 'library' or 'require' call to ‘topGO’ in package code. - Please use :: or requireNamespace() instead. - See section 'Suggested packages' in the 'Writing R Extensions' manual. - ``` - -* checking installed package size ... NOTE - ``` - installed size is 7.1Mb - sub-directories of 1Mb or more: - doc 3.9Mb - extdata 2.0Mb - ``` - -* checking R code for possible problems ... NOTE - ``` - ... - variable ‘ENTREZID’ - annotate,character-genomic_ressource: no visible binding for global - variable ‘GO’ - annotate,character-genomic_ressource: no visible binding for global - variable ‘EVIDENCE’ - annotate,character-genomic_ressource: no visible binding for global - variable ‘ONTOLOGY’ - compute_SS_distances,ANY-character: no visible binding for global - variable ‘N’ - compute_SS_distances,ANY-character: no visible binding for global - variable ‘IC’ - merge_enrich_terms,list : : esummary : : no - visible binding for global variable ‘start’ - merge_enrich_terms,list : : esummary : : no - visible binding for global variable ‘end’ - Undefined global functions or variables: - . ENTREZID EVIDENCE GO GO.ID IC N ONTOLOGY end start text - Consider adding - importFrom("graphics", "text") - importFrom("stats", "end", "start") - to your NAMESPACE file. - ``` - -# visNetwork - -
- -* Version: 2.0.9 -* GitHub: https://github.com/datastorm-open/visNetwork -* Source code: https://github.com/cran/visNetwork -* Date/Publication: 2019-12-06 08:50:02 UTC -* Number of recursive dependencies: 95 - -Run `revdep_details(, "visNetwork")` for more info - -
- -## In both - -* checking installed package size ... NOTE - ``` - installed size is 11.1Mb - sub-directories of 1Mb or more: - doc 4.3Mb - docjs 1.4Mb - htmlwidgets 3.9Mb - ``` - -# vizdraws - -
- -* Version: 1.0.0 -* GitHub: https://github.com/ignacio82/vizdraws -* Source code: https://github.com/cran/vizdraws -* Date/Publication: 2020-04-28 08:50:02 UTC -* Number of recursive dependencies: 37 - -Run `revdep_details(, "vizdraws")` for more info - -
- -## In both - -* checking dependencies in R code ... NOTE - ``` - Namespaces in Imports field not imported from: - ‘glue’ ‘tidyr’ - All declared Imports should be used. - ``` - -# wordcloud2 - -
- -* Version: 0.2.1 -* GitHub: https://github.com/lchiffon/wordcloud2 -* Source code: https://github.com/cran/wordcloud2 -* Date/Publication: 2018-01-03 15:20:37 UTC -* Number of recursive dependencies: 24 - -Run `revdep_details(, "wordcloud2")` for more info - -
- -## In both - -* checking data for non-ASCII characters ... NOTE - ``` - Note: found 933 marked UTF-8 strings - ``` - +*Wow, no problems at all. :)* \ No newline at end of file