From b4148ee60e6cd3817ec75527e3406ac79384f08d Mon Sep 17 00:00:00 2001 From: Tom Sasani Date: Tue, 16 Jan 2024 15:05:21 -0500 Subject: [PATCH] remove complicated pip install req's --- README.md | 3 --- 1 file changed, 3 deletions(-) diff --git a/README.md b/README.md index eccdc57..d0c0cc7 100644 --- a/README.md +++ b/README.md @@ -26,9 +26,6 @@ In practice, *de novo* mutations are partitioned by $k$-mer context; for simplic All methods were written in Python 3.9.6, and the full list of dependencies is provided in `requirements.txt`. -The `scikit-allel` package requires `numpy`, so I recommend installing dependencies with `xargs -L 1 pip install < requirements.txt`, rather than the standard `pip install -r requirements.txt`. -This way, `numpy` will be installed prior to `scikit-allel`. - > I recommend using [`pyenv`](https://github.com/pyenv/pyenv) and [`pyenv-virtualenv`](https://github.com/pyenv/pyenv-virtualenv) to manage Python environments. ## Reproducing analyses and figures from Sasani et al. (2023)