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doc update; CHANGES
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kbwestfall committed Feb 21, 2023
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4 changes: 2 additions & 2 deletions CHANGES.rst
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1.12.1dev
---------
1.12.1 (21 Feb 2023)
--------------------

- (Hotfix) Specify sphinx versions to correctly work with
sphinx_rtd_theme
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21 changes: 11 additions & 10 deletions doc/help/pypeit_cache_github_data.rst
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spectrograph A valid spectrograph identifier: bok_bc, gemini_flamingos1,
gemini_flamingos2, gemini_gmos_north_e2v,
gemini_gmos_north_ham, gemini_gmos_north_ham_ns,
gemini_gmos_south_ham, gemini_gnirs, gtc_osiris, jwst_nircam,
jwst_nirspec, keck_deimos, keck_hires, keck_kcwi,
keck_lris_blue, keck_lris_blue_orig, keck_lris_red,
keck_lris_red_mark4, keck_lris_red_orig, keck_mosfire,
keck_nires, keck_nirspec_low, lbt_luci1, lbt_luci2,
lbt_mods1b, lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
gemini_gmos_south_ham, gemini_gnirs, gtc_maat, gtc_osiris,
gtc_osiris_plus, jwst_nircam, jwst_nirspec, keck_deimos,
keck_hires, keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b, lbt_mods2r,
ldt_deveny, magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel, mmt_mmirs,
not_alfosc, not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue, shane_kast_red,
shane_kast_red_ret, soar_goodman_red, tng_dolores, vlt_fors2,
vlt_sinfoni, vlt_xshooter_nir, vlt_xshooter_uvb,
vlt_xshooter_vis, wht_isis_blue, wht_isis_red
shane_kast_red_ret, soar_goodman_blue, soar_goodman_red,
tng_dolores, vlt_fors2, vlt_sinfoni, vlt_xshooter_nir,
vlt_xshooter_uvb, vlt_xshooter_vis, wht_isis_blue,
wht_isis_red
optional arguments:
-h, --help show this help message and exit
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23 changes: 12 additions & 11 deletions doc/help/pypeit_chk_for_calibs.rst
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gemini_flamingos1, gemini_flamingos2,
gemini_gmos_north_e2v, gemini_gmos_north_ham,
gemini_gmos_north_ham_ns, gemini_gmos_south_ham,
gemini_gnirs, gtc_osiris, jwst_nircam, jwst_nirspec,
keck_deimos, keck_hires, keck_kcwi, keck_lris_blue,
keck_lris_blue_orig, keck_lris_red, keck_lris_red_mark4,
keck_lris_red_orig, keck_mosfire, keck_nires,
keck_nirspec_low, lbt_luci1, lbt_luci2, lbt_mods1b,
lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel,
mmt_mmirs, not_alfosc, not_alfosc_vert, ntt_efosc2,
p200_dbsp_blue, p200_dbsp_red, p200_tspec,
shane_kast_blue, shane_kast_red, shane_kast_red_ret,
gemini_gnirs, gtc_maat, gtc_osiris, gtc_osiris_plus,
jwst_nircam, jwst_nirspec, keck_deimos, keck_hires,
keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b,
lbt_mods2r, ldt_deveny, magellan_fire,
magellan_fire_long, magellan_mage, mdm_osmos_mdm4k,
mmt_binospec, mmt_bluechannel, mmt_mmirs, not_alfosc,
not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue,
shane_kast_red, shane_kast_red_ret, soar_goodman_blue,
soar_goodman_red, tng_dolores, vlt_fors2, vlt_sinfoni,
vlt_xshooter_nir, vlt_xshooter_uvb, vlt_xshooter_vis,
wht_isis_blue, wht_isis_red (default: None)
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6 changes: 3 additions & 3 deletions doc/help/pypeit_collate_1d.rst
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[--par_outfile PAR_OUTFILE] [--outdir OUTDIR]
[--spec1d_outdir SPEC1D_OUTDIR] [--tolerance TOLERANCE]
[--match_using MATCH_USING] [--dry_run] [--ignore_flux]
[--flux] [--exclude_slit_bm [EXCLUDE_SLIT_BM ...]]
[--flux] [--exclude_slit_bm EXCLUDE_SLIT_BM]
[--exclude_serendip] [--wv_rms_thresh WV_RMS_THRESH]
[--refframe {observed,heliocentric,barycentric}]
[-v VERBOSITY]
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are coadded if all spec1ds have been fluxed calibrated.
--flux If set, the script will flux calibrate using archived
sensfuncs before coadding.
--exclude_slit_bm [EXCLUDE_SLIT_BM ...]
--exclude_slit_bm EXCLUDE_SLIT_BM
A list of slit trace bitmask bits that should be
excluded.
excluded. Comma separated.
--exclude_serendip Whether to exclude SERENDIP objects from collating.
--wv_rms_thresh WV_RMS_THRESH
If set, any objects with a wavelength RMS > this value
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23 changes: 12 additions & 11 deletions doc/help/pypeit_obslog.rst
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gemini_flamingos1, gemini_flamingos2,
gemini_gmos_north_e2v, gemini_gmos_north_ham,
gemini_gmos_north_ham_ns, gemini_gmos_south_ham,
gemini_gnirs, gtc_osiris, jwst_nircam, jwst_nirspec,
keck_deimos, keck_hires, keck_kcwi, keck_lris_blue,
keck_lris_blue_orig, keck_lris_red, keck_lris_red_mark4,
keck_lris_red_orig, keck_mosfire, keck_nires,
keck_nirspec_low, lbt_luci1, lbt_luci2, lbt_mods1b,
lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel,
mmt_mmirs, not_alfosc, not_alfosc_vert, ntt_efosc2,
p200_dbsp_blue, p200_dbsp_red, p200_tspec,
shane_kast_blue, shane_kast_red, shane_kast_red_ret,
gemini_gnirs, gtc_maat, gtc_osiris, gtc_osiris_plus,
jwst_nircam, jwst_nirspec, keck_deimos, keck_hires,
keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b,
lbt_mods2r, ldt_deveny, magellan_fire,
magellan_fire_long, magellan_mage, mdm_osmos_mdm4k,
mmt_binospec, mmt_bluechannel, mmt_mmirs, not_alfosc,
not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue,
shane_kast_red, shane_kast_red_ret, soar_goodman_blue,
soar_goodman_red, tng_dolores, vlt_fors2, vlt_sinfoni,
vlt_xshooter_nir, vlt_xshooter_uvb, vlt_xshooter_vis,
wht_isis_blue, wht_isis_red
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23 changes: 12 additions & 11 deletions doc/help/pypeit_ql.rst
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gemini_flamingos1, gemini_flamingos2,
gemini_gmos_north_e2v, gemini_gmos_north_ham,
gemini_gmos_north_ham_ns, gemini_gmos_south_ham,
gemini_gnirs, gtc_osiris, jwst_nircam, jwst_nirspec,
keck_deimos, keck_hires, keck_kcwi, keck_lris_blue,
keck_lris_blue_orig, keck_lris_red, keck_lris_red_mark4,
keck_lris_red_orig, keck_mosfire, keck_nires,
keck_nirspec_low, lbt_luci1, lbt_luci2, lbt_mods1b,
lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel,
mmt_mmirs, not_alfosc, not_alfosc_vert, ntt_efosc2,
p200_dbsp_blue, p200_dbsp_red, p200_tspec,
shane_kast_blue, shane_kast_red, shane_kast_red_ret,
gemini_gnirs, gtc_maat, gtc_osiris, gtc_osiris_plus,
jwst_nircam, jwst_nirspec, keck_deimos, keck_hires,
keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b,
lbt_mods2r, ldt_deveny, magellan_fire,
magellan_fire_long, magellan_mage, mdm_osmos_mdm4k,
mmt_binospec, mmt_bluechannel, mmt_mmirs, not_alfosc,
not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue,
shane_kast_red, shane_kast_red_ret, soar_goodman_blue,
soar_goodman_red, tng_dolores, vlt_fors2, vlt_sinfoni,
vlt_xshooter_nir, vlt_xshooter_uvb, vlt_xshooter_vis,
wht_isis_blue, wht_isis_red
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23 changes: 12 additions & 11 deletions doc/help/pypeit_ql_multislit.rst
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gemini_flamingos1, gemini_flamingos2,
gemini_gmos_north_e2v, gemini_gmos_north_ham,
gemini_gmos_north_ham_ns, gemini_gmos_south_ham,
gemini_gnirs, gtc_osiris, jwst_nircam, jwst_nirspec,
keck_deimos, keck_hires, keck_kcwi, keck_lris_blue,
keck_lris_blue_orig, keck_lris_red, keck_lris_red_mark4,
keck_lris_red_orig, keck_mosfire, keck_nires,
keck_nirspec_low, lbt_luci1, lbt_luci2, lbt_mods1b,
lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel,
mmt_mmirs, not_alfosc, not_alfosc_vert, ntt_efosc2,
p200_dbsp_blue, p200_dbsp_red, p200_tspec,
shane_kast_blue, shane_kast_red, shane_kast_red_ret,
gemini_gnirs, gtc_maat, gtc_osiris, gtc_osiris_plus,
jwst_nircam, jwst_nirspec, keck_deimos, keck_hires,
keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b,
lbt_mods2r, ldt_deveny, magellan_fire,
magellan_fire_long, magellan_mage, mdm_osmos_mdm4k,
mmt_binospec, mmt_bluechannel, mmt_mmirs, not_alfosc,
not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue,
shane_kast_red, shane_kast_red_ret, soar_goodman_blue,
soar_goodman_red, tng_dolores, vlt_fors2, vlt_sinfoni,
vlt_xshooter_nir, vlt_xshooter_uvb, vlt_xshooter_vis,
wht_isis_blue, wht_isis_red
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23 changes: 12 additions & 11 deletions doc/help/pypeit_setup.rst
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gemini_flamingos1, gemini_flamingos2,
gemini_gmos_north_e2v, gemini_gmos_north_ham,
gemini_gmos_north_ham_ns, gemini_gmos_south_ham,
gemini_gnirs, gtc_osiris, jwst_nircam, jwst_nirspec,
keck_deimos, keck_hires, keck_kcwi, keck_lris_blue,
keck_lris_blue_orig, keck_lris_red, keck_lris_red_mark4,
keck_lris_red_orig, keck_mosfire, keck_nires,
keck_nirspec_low, lbt_luci1, lbt_luci2, lbt_mods1b,
lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel,
mmt_mmirs, not_alfosc, not_alfosc_vert, ntt_efosc2,
p200_dbsp_blue, p200_dbsp_red, p200_tspec,
shane_kast_blue, shane_kast_red, shane_kast_red_ret,
gemini_gnirs, gtc_maat, gtc_osiris, gtc_osiris_plus,
jwst_nircam, jwst_nirspec, keck_deimos, keck_hires,
keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b,
lbt_mods2r, ldt_deveny, magellan_fire,
magellan_fire_long, magellan_mage, mdm_osmos_mdm4k,
mmt_binospec, mmt_bluechannel, mmt_mmirs, not_alfosc,
not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue,
shane_kast_red, shane_kast_red_ret, soar_goodman_blue,
soar_goodman_red, tng_dolores, vlt_fors2, vlt_sinfoni,
vlt_xshooter_nir, vlt_xshooter_uvb, vlt_xshooter_vis,
wht_isis_blue, wht_isis_red (default: None)
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27 changes: 14 additions & 13 deletions doc/help/pypeit_trace_edges.rst
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providing files directly: bok_bc, gemini_flamingos1,
gemini_flamingos2, gemini_gmos_north_e2v,
gemini_gmos_north_ham, gemini_gmos_north_ham_ns,
gemini_gmos_south_ham, gemini_gnirs, gtc_osiris,
jwst_nircam, jwst_nirspec, keck_deimos, keck_hires,
keck_kcwi, keck_lris_blue, keck_lris_blue_orig,
keck_lris_red, keck_lris_red_mark4, keck_lris_red_orig,
keck_mosfire, keck_nires, keck_nirspec_low, lbt_luci1,
lbt_luci2, lbt_mods1b, lbt_mods1r, lbt_mods2b,
lbt_mods2r, ldt_deveny, magellan_fire,
magellan_fire_long, magellan_mage, mdm_osmos_mdm4k,
mmt_binospec, mmt_bluechannel, mmt_mmirs, not_alfosc,
not_alfosc_vert, ntt_efosc2, p200_dbsp_blue,
p200_dbsp_red, p200_tspec, shane_kast_blue,
shane_kast_red, shane_kast_red_ret, soar_goodman_red,
tng_dolores, vlt_fors2, vlt_sinfoni, vlt_xshooter_nir,
gemini_gmos_south_ham, gemini_gnirs, gtc_maat,
gtc_osiris, gtc_osiris_plus, jwst_nircam, jwst_nirspec,
keck_deimos, keck_hires, keck_kcwi, keck_lris_blue,
keck_lris_blue_orig, keck_lris_red, keck_lris_red_mark4,
keck_lris_red_orig, keck_mosfire, keck_nires,
keck_nirspec_low, lbt_luci1, lbt_luci2, lbt_mods1b,
lbt_mods1r, lbt_mods2b, lbt_mods2r, ldt_deveny,
magellan_fire, magellan_fire_long, magellan_mage,
mdm_osmos_mdm4k, mmt_binospec, mmt_bluechannel,
mmt_mmirs, not_alfosc, not_alfosc_vert, ntt_efosc2,
p200_dbsp_blue, p200_dbsp_red, p200_tspec,
shane_kast_blue, shane_kast_red, shane_kast_red_ret,
soar_goodman_blue, soar_goodman_red, tng_dolores,
vlt_fors2, vlt_sinfoni, vlt_xshooter_nir,
vlt_xshooter_uvb, vlt_xshooter_vis, wht_isis_blue,
wht_isis_red (default: None)
-b BINNING, --binning BINNING
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