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test_on_push.yml
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name: PyBaMM
on:
workflow_dispatch:
pull_request:
env:
PYBAMM_DISABLE_TELEMETRY: "true"
FORCE_COLOR: 3
PYBAMM_IDAKLU_EXPR_CASADI: ON
PYBAMM_IDAKLU_EXPR_IREE: ON
concurrency:
# github.workflow: name of the workflow, so that we don't cancel other workflows
# github.event.pull_request.number || github.ref: pull request number or branch name if not a pull request
group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
# Cancel in-progress runs when a new workflow with the same group name is triggered
# This avoids workflow runs on both pushes and PRs
cancel-in-progress: true
jobs:
style:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
- name: Setup Python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: 3.12
- name: Set up uv
run: python -m pip install uv
- name: Check style
run: |
python -m uv pip install pre-commit
pre-commit run -a
run_unit_integration_and_coverage_tests:
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-13, macos-14, windows-latest]
python-version: ["3.9", "3.10", "3.11", "3.12"]
name: Tests (${{ matrix.os }} / Python ${{ matrix.python-version }})
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
- name: Install Linux system dependencies
uses: awalsh128/cache-apt-pkgs-action@a6c3917cc929dd0345bfb2d3feaf9101823370ad # v1.4.2
if: matrix.os == 'ubuntu-latest'
with:
packages: gfortran gcc graphviz pandoc
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install OpenBLAS and TeXLive for Linux
if: matrix.os == 'ubuntu-latest'
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
- name: Install macOS system dependencies
if: matrix.os == 'macos-13' || matrix.os == 'macos-14'
env:
HOMEBREW_NO_INSTALL_CLEANUP: 1
HOMEBREW_NO_AUTO_UPDATE: 1
HOMEBREW_NO_COLOR: 1
# Speed up CI
NONINTERACTIVE: 1
# sometimes gfortran cannot be found, so reinstall gcc just to be sure
run: |
brew analytics off
brew install graphviz libomp
brew reinstall gcc
- name: Install Windows system dependencies
if: matrix.os == 'windows-latest'
run: choco install graphviz --version=8.0.5
- name: Set up Python ${{ matrix.python-version }}
id: setup-python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: ${{ matrix.python-version }}
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Cache pybamm-requires nox environment for GNU/Linux and macOS
uses: actions/cache@1bd1e32a3bdc45362d1e726936510720a7c30a57 # v4.2.0
if: matrix.os != 'windows-latest'
with:
path: |
# Repository files
${{ github.workspace }}/pybind11/
${{ github.workspace }}/install_KLU_Sundials/
# Headers and dynamic library files for SuiteSparse and SUNDIALS
${{ env.HOME }}/.local/lib/
${{ env.HOME }}/.local/include/
key: nox-${{ matrix.os }}-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py', '**/noxfile.py', '**/test_on_push.yml') }}
- name: Install SuiteSparse and SUNDIALS on GNU/Linux and macOS
timeout-minutes: 10
if: matrix.os != 'windows-latest'
run: python -m nox -s pybamm-requires
- name: Run unit tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
if: matrix.os != 'ubuntu-latest' || matrix.python-version != '3.12'
run: python -m nox -s unit
- name: Run coverage tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
run: python -m nox -s coverage
- name: Upload coverage report
if: matrix.os == 'ubuntu-latest' && matrix.python-version == '3.12'
uses: codecov/codecov-action@7f8b4b4bde536c465e797be725718b88c5d95e0e # v5.1.1
with:
token: ${{ secrets.CODECOV_TOKEN }}
- name: Run integration tests for ${{ matrix.os }} with Python ${{ matrix.python-version }}
run: python -m nox -s integration
# Skips IDAKLU module compilation for speedups, which is already tested in other jobs.
run_doctests:
runs-on: ubuntu-latest
strategy:
fail-fast: false
name: Doctests (ubuntu-latest / Python 3.11)
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
with:
fetch-depth: 0
- name: Install Linux system dependencies
uses: awalsh128/cache-apt-pkgs-action@a6c3917cc929dd0345bfb2d3feaf9101823370ad # v1.4.2
with:
packages: graphviz pandoc
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install TeXLive for Linux
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install texlive-latex-extra dvipng
- name: Set up Python
id: setup-python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: 3.11
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Install docs dependencies and run doctests for GNU/Linux
run: python -m nox -s doctests
- name: Check if the documentation can be built for GNU/Linux
run: python -m nox -s docs
run_example_tests:
runs-on: ubuntu-latest
strategy:
fail-fast: false
name: Example notebooks (ubuntu-latest / Python 3.12)
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
- name: Install Linux system dependencies
uses: awalsh128/cache-apt-pkgs-action@a6c3917cc929dd0345bfb2d3feaf9101823370ad # v1.4.2
with:
packages: gfortran gcc graphviz pandoc
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install OpenBLAS and TeXLive for Linux
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
- name: Set up Python 3.12
id: setup-python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: 3.12
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Cache pybamm-requires nox environment for GNU/Linux
uses: actions/cache@1bd1e32a3bdc45362d1e726936510720a7c30a57 # v4.2.0
with:
path: |
# Repository files
${{ github.workspace }}/pybind11/
${{ github.workspace }}/install_KLU_Sundials/
# Headers and dynamic library files for SuiteSparse and SUNDIALS
${{ env.HOME }}/.local/lib/
${{ env.HOME }}/.local/include/
key: nox-${{ matrix.os }}-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py', '**/noxfile.py', '**/test_on_push.yml') }}
- name: Install SuiteSparse and SUNDIALS on GNU/Linux
timeout-minutes: 10
run: python -m nox -s pybamm-requires
- name: Run example notebooks tests for GNU/Linux with Python 3.12
run: python -m nox -s examples
run_scripts_tests:
runs-on: ubuntu-latest
strategy:
fail-fast: false
name: Example scripts (ubuntu-latest / Python 3.12)
steps:
- name: Check out PyBaMM repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
- name: Install Linux system dependencies
uses: awalsh128/cache-apt-pkgs-action@a6c3917cc929dd0345bfb2d3feaf9101823370ad # v1.4.2
with:
packages: gfortran gcc graphviz
execute_install_scripts: true
# dot -c is for registering graphviz fonts and plugins
- name: Install OpenBLAS and TeXLive for Linux
run: |
sudo apt-get update
sudo dot -c
sudo apt-get install libopenblas-dev texlive-latex-extra dvipng
- name: Set up Python 3.12
id: setup-python
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: 3.12
cache: 'pip'
- name: Set up uv
run: python -m pip install uv
- name: Install nox
run: python -m uv pip install nox[uv]
- name: Cache pybamm-requires nox environment for GNU/Linux
uses: actions/cache@1bd1e32a3bdc45362d1e726936510720a7c30a57 # v4.2.0
with:
path: |
# Repository files
${{ github.workspace }}/pybind11/
${{ github.workspace }}/install_KLU_Sundials/
# Headers and dynamic library files for SuiteSparse and SUNDIALS
${{ env.HOME }}/.local/lib/
${{ env.HOME }}/.local/include/
key: nox-${{ matrix.os }}-pybamm-requires-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/install_KLU_Sundials.py', '**/noxfile.py', '**/test_on_push.yml') }}
- name: Install SuiteSparse and SUNDIALS on GNU/Linux
timeout-minutes: 10
run: python -m nox -s pybamm-requires
- name: Run example scripts tests for GNU/Linux with Python 3.12
run: python -m nox -s scripts