From b79315db29c06791ec4afd1858919785cc192f62 Mon Sep 17 00:00:00 2001
From: Paul Tiede <ptiede91@gmail.com>
Date: Wed, 21 Feb 2024 08:30:08 -0500
Subject: [PATCH] update docs

---
 docs/make.jl                    |  2 +-
 examples/ClosureImaging/main.jl | 10 +++++-----
 examples/HybridImaging/main.jl  |  2 +-
 3 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/docs/make.jl b/docs/make.jl
index 4a7235d0..5186a332 100755
--- a/docs/make.jl
+++ b/docs/make.jl
@@ -29,7 +29,7 @@ makedocs(;
              ComradeOptimization, ComradeAHMC,
              ComradeNested, ComradeDynesty,
              ComradeAdaptMCMC],
-    repo="https://github.com/ptiede/Comrade.jl/blob/{commit}{path}#{line}",
+    # repo="https://github.com/ptiede/Comrade.jl/blob/{commit}{path}#{line}",
     sitename="Comrade.jl",
     format = Documenter.HTML(;prettyurls=true),
     pages=Any[
diff --git a/examples/ClosureImaging/main.jl b/examples/ClosureImaging/main.jl
index a237bdf5..2dc23082 100644
--- a/examples/ClosureImaging/main.jl
+++ b/examples/ClosureImaging/main.jl
@@ -191,7 +191,7 @@ DisplayAs.Text(DisplayAs.PNG(fig)) #hide
 using ComradeAHMC
 using Zygote
 metric = DiagEuclideanMetric(ndim)
-chain = sample(post, AHMC(;metric, autodiff=Val(:Zygote)), 700; n_adapts=500);
+chain = sample(post, AHMC(;metric, autodiff=Val(:Zygote)), 700; n_adapts=500, progress=false);
 
 
 # !!! warning
@@ -212,16 +212,16 @@ simg = std(imgs)
 fig = CM.Figure(;resolution=(700, 700));
 CM.image(fig[1,1], mimg,
                    axis=(xreversed=true, aspect=1, title="Mean Image"),
-                   colormap=:afmhot)
+                   colormap=:afmhot);
 CM.image(fig[1,2], simg./(max.(mimg, 1e-5)),
                    axis=(xreversed=true, aspect=1, title="1/SNR",), colorrange=(0.0, 2.0),
-                   colormap=:afmhot)
+                   colormap=:afmhot);
 CM.image(fig[2,1], imgs[1],
                    axis=(xreversed=true, aspect=1,title="Draw 1"),
-                   colormap=:afmhot)
+                   colormap=:afmhot);
 CM.image(fig[2,2], imgs[end],
                    axis=(xreversed=true, aspect=1,title="Draw 2"),
-                   colormap=:afmhot)
+                   colormap=:afmhot);
 CM.hidedecorations!.(fig.content)
 DisplayAs.Text(DisplayAs.PNG(fig)) #hide
 
diff --git a/examples/HybridImaging/main.jl b/examples/HybridImaging/main.jl
index 216f6ad3..ef584356 100644
--- a/examples/HybridImaging/main.jl
+++ b/examples/HybridImaging/main.jl
@@ -274,7 +274,7 @@ CM.image(g, skymodel(post, xopt), axis=(aspect=1, xreversed=true, title="MAP"),
 # We will now move directly to sampling at this point.
 using ComradeAHMC
 metric = DiagEuclideanMetric(ndim)
-chain = sample(rng, post, AHMC(;metric, autodiff=Val(:Zygote)), 700; n_adapts=500, initial_params=xopt, progress=true);
+chain = sample(rng, post, AHMC(;metric, autodiff=Val(:Zygote)), 700; n_adapts=500, initial_params=xopt, progress=false);
 
 # We then remove the adaptation/warmup phase from our chain
 chain = chain[501:end]