From f98b530ed62bc9b3a637318c190f61831d8b92f6 Mon Sep 17 00:00:00 2001
From: Paul Sweeney <paul.sweeney@cruk.cam.ac.uk>
Date: Thu, 31 Oct 2024 16:04:48 +0000
Subject: [PATCH] Update and rename requirements.txt to REQUIREMENTS.txt

---
 REQUIREMENTS.txt | 150 +++++++++++++++++++++++++++++++++++++++++++++++
 requirements.txt | 150 -----------------------------------------------
 2 files changed, 150 insertions(+), 150 deletions(-)
 create mode 100644 REQUIREMENTS.txt
 delete mode 100644 requirements.txt

diff --git a/REQUIREMENTS.txt b/REQUIREMENTS.txt
new file mode 100644
index 0000000..18a2575
--- /dev/null
+++ b/REQUIREMENTS.txt
@@ -0,0 +1,150 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+_libgcc_mutex==0.1=main
+_openmp_mutex==4.5=1_gnu
+absl-py==0.14.0=pypi_0
+alabaster==0.7.12=pypi_0
+astroid==2.4.2=pypi_0
+astunparse==1.6.3=pypi_0
+atomicwrites==1.4.0=pypi_0
+attrs==21.2.0=pypi_0
+autopep8==1.5.7=pypi_0
+babel==2.9.1=pypi_0
+backcall==0.2.0=pypi_0
+bleach==3.3.1=pypi_0
+ca-certificates==2021.7.5=h06a4308_1
+cachetools==4.2.2=pypi_0
+certifi==2021.5.30=pypi_0
+cffi==1.14.6=pypi_0
+chardet==4.0.0=pypi_0
+cloudpickle==1.6.0=pypi_0
+cryptography==3.2.1=pypi_0
+decorator==5.1.0=pypi_0
+defusedxml==0.7.1=pypi_0
+diff-match-patch==20200713=pypi_0
+docutils==0.16=pypi_0
+entrypoints==0.3=pypi_0
+flake8==3.9.2=pypi_0
+gast==0.5.2=pypi_0
+google-auth==1.23.0=pypi_0
+google-auth-oauthlib==0.4.1=pypi_0
+google-pasta==0.2.0=pypi_0
+grpcio==1.41.0=pypi_0
+h5py==2.10.0=pypi_0
+helpdev==0.7.1=pypi_0
+idna==2.10=pypi_0
+imagesize==1.2.0=pypi_0
+importlib-metadata==2.1.1=pypi_0
+intervaltree==3.1.0=pypi_0
+ipykernel==5.5.5=pypi_0
+ipython==7.9.0=pypi_0
+ipython-genutils==0.2.0=pypi_0
+isort==4.3.21=pypi_0
+jedi==0.17.2=pypi_0
+jeepney==0.4.3=pypi_0
+jinja2==2.11.3=pypi_0
+jsonschema==3.2.0=pypi_0
+jupyter-client==6.1.12=pypi_0
+jupyter-core==4.6.3=pypi_0
+keras-preprocessing==1.1.2=pypi_0
+keyring==20.0.1=pypi_0
+lazy-object-proxy==1.4.3=pypi_0
+libffi==3.3=he6710b0_2
+libgcc-ng==9.3.0=h5101ec6_17
+libgomp==9.3.0=h5101ec6_17
+libstdcxx-ng==9.3.0=hd4cf53a_17
+markdown==3.2.2=pypi_0
+markupsafe==1.1.1=pypi_0
+mccabe==0.6.1=pypi_0
+mistune==0.8.4=pypi_0
+nbconvert==5.6.1=pypi_0
+nbformat==5.1.3=pypi_0
+ncurses==6.2=he6710b0_1
+networkx==2.4=pypi_0
+numpy==1.18.5=pypi_0
+numpydoc==1.1.0=pypi_0
+oauthlib==3.1.0=pypi_0
+openssl==1.1.1l=h7f8727e_0
+opt-einsum==3.3.0=pypi_0
+packaging==20.9=pypi_0
+pandocfilters==1.5.0=pypi_0
+parso==0.7.1=pypi_0
+pathtools==0.1.2=pypi_0
+pexpect==4.8.0=pypi_0
+pickleshare==0.7.5=pypi_0
+pip==20.3.4=pypi_0
+pluggy==0.13.1=pypi_0
+prompt-toolkit==2.0.10=pypi_0
+protobuf==3.18.0=pypi_0
+psutil==5.8.0=pypi_0
+ptyprocess==0.7.0=pypi_0
+pyasn1==0.4.8=pypi_0
+pyasn1-modules==0.2.8=pypi_0
+pycodestyle==2.7.0=pypi_0
+pycparser==2.20=pypi_0
+pydocstyle==5.1.1=pypi_0
+pyflakes==2.3.1=pypi_0
+pygments==2.10.0=pypi_0
+pylint==2.6.2=pypi_0
+pyparsing==2.4.7=pypi_0
+pyqt5==5.15.2=pypi_0
+pyqt5-sip==12.9.0=pypi_0
+pyqtwebengine==5.15.2=pypi_0
+pyrsistent==0.17.3=pypi_0
+python==3.5.6=h12debd9_1
+python-dateutil==2.8.2=pypi_0
+python-jsonrpc-server==0.4.0=pypi_0
+python-language-server==0.36.2=pypi_0
+pytz==2021.1=pypi_0
+pyxdg==0.27=pypi_0
+pyzmq==20.0.0=pypi_0
+qdarkstyle==3.0.2=pypi_0
+qtawesome==0.7.3=pypi_0
+qtconsole==4.7.7=pypi_0
+qtpy==1.9.0=pypi_0
+readline==8.1=h27cfd23_0
+requests==2.25.1=pypi_0
+requests-oauthlib==1.3.0=pypi_0
+rope==0.20.1=pypi_0
+rsa==4.7.2=pypi_0
+secretstorage==3.2.0=pypi_0
+setuptools==50.3.2=pypi_0
+six==1.16.0=pypi_0
+snowballstemmer==2.1.0=pypi_0
+sortedcontainers==2.4.0=pypi_0
+sphinx==3.5.4=pypi_0
+sphinxcontrib-applehelp==1.0.2=pypi_0
+sphinxcontrib-devhelp==1.0.2=pypi_0
+sphinxcontrib-htmlhelp==1.0.3=pypi_0
+sphinxcontrib-jsmath==1.0.1=pypi_0
+sphinxcontrib-qthelp==1.0.3=pypi_0
+sphinxcontrib-serializinghtml==1.1.5=pypi_0
+sphinxcontrib-websupport==1.2.4=pypi_0
+spyder==4.1.6=pypi_0
+spyder-kernels==2.1.1=pypi_0
+sqlite==3.36.0=hc218d9a_0
+tensorboard==2.4.1=pypi_0
+tensorboard-plugin-wit==1.8.0=pypi_0
+tensorflow==2.3.1=pypi_0
+tensorflow-estimator==2.6.0=pypi_0
+termcolor==1.1.0=pypi_0
+testpath==0.5.0=pypi_0
+tk==8.6.11=h1ccaba5_0
+toml==0.10.2=pypi_0
+tornado==6.1=pypi_0
+traitlets==4.3.3=pypi_0
+typed-ast==1.4.3=pypi_0
+ujson==3.2.0=pypi_0
+urllib3==1.26.7=pypi_0
+watchdog==0.10.7=pypi_0
+wcwidth==0.2.5=pypi_0
+webencodings==0.5.1=pypi_0
+werkzeug==1.0.1=pypi_0
+wheel==0.37.0=pyhd3eb1b0_1
+wrapt==1.12.1=pypi_0
+wurlitzer==3.0.2=pypi_0
+xz==5.2.5=h7b6447c_0
+yapf==0.31.0=pypi_0
+zipp==1.2.0=pypi_0
+zlib==1.2.11=h7b6447c_3
diff --git a/requirements.txt b/requirements.txt
deleted file mode 100644
index c59522d..0000000
--- a/requirements.txt
+++ /dev/null
@@ -1,150 +0,0 @@
-# This file may be used to create an environment using:
-# $ conda create --name <env> --file <this file>
-# platform: linux-64
-_libgcc_mutex=0.1=main
-_openmp_mutex=4.5=1_gnu
-absl-py=0.14.0=pypi_0
-alabaster=0.7.12=pypi_0
-astroid=2.4.2=pypi_0
-astunparse=1.6.3=pypi_0
-atomicwrites=1.4.0=pypi_0
-attrs=21.2.0=pypi_0
-autopep8=1.5.7=pypi_0
-babel=2.9.1=pypi_0
-backcall=0.2.0=pypi_0
-bleach=3.3.1=pypi_0
-ca-certificates=2021.7.5=h06a4308_1
-cachetools=4.2.2=pypi_0
-certifi=2021.5.30=pypi_0
-cffi=1.14.6=pypi_0
-chardet=4.0.0=pypi_0
-cloudpickle=1.6.0=pypi_0
-cryptography=3.2.1=pypi_0
-decorator=5.1.0=pypi_0
-defusedxml=0.7.1=pypi_0
-diff-match-patch=20200713=pypi_0
-docutils=0.16=pypi_0
-entrypoints=0.3=pypi_0
-flake8=3.9.2=pypi_0
-gast=0.5.2=pypi_0
-google-auth=1.23.0=pypi_0
-google-auth-oauthlib=0.4.1=pypi_0
-google-pasta=0.2.0=pypi_0
-grpcio=1.41.0=pypi_0
-h5py=2.10.0=pypi_0
-helpdev=0.7.1=pypi_0
-idna=2.10=pypi_0
-imagesize=1.2.0=pypi_0
-importlib-metadata=2.1.1=pypi_0
-intervaltree=3.1.0=pypi_0
-ipykernel=5.5.5=pypi_0
-ipython=7.9.0=pypi_0
-ipython-genutils=0.2.0=pypi_0
-isort=4.3.21=pypi_0
-jedi=0.17.2=pypi_0
-jeepney=0.4.3=pypi_0
-jinja2=2.11.3=pypi_0
-jsonschema=3.2.0=pypi_0
-jupyter-client=6.1.12=pypi_0
-jupyter-core=4.6.3=pypi_0
-keras-preprocessing=1.1.2=pypi_0
-keyring=20.0.1=pypi_0
-lazy-object-proxy=1.4.3=pypi_0
-libffi=3.3=he6710b0_2
-libgcc-ng=9.3.0=h5101ec6_17
-libgomp=9.3.0=h5101ec6_17
-libstdcxx-ng=9.3.0=hd4cf53a_17
-markdown=3.2.2=pypi_0
-markupsafe=1.1.1=pypi_0
-mccabe=0.6.1=pypi_0
-mistune=0.8.4=pypi_0
-nbconvert=5.6.1=pypi_0
-nbformat=5.1.3=pypi_0
-ncurses=6.2=he6710b0_1
-networkx=2.4=pypi_0
-numpy=1.18.5=pypi_0
-numpydoc=1.1.0=pypi_0
-oauthlib=3.1.0=pypi_0
-openssl=1.1.1l=h7f8727e_0
-opt-einsum=3.3.0=pypi_0
-packaging=20.9=pypi_0
-pandocfilters=1.5.0=pypi_0
-parso=0.7.1=pypi_0
-pathtools=0.1.2=pypi_0
-pexpect=4.8.0=pypi_0
-pickleshare=0.7.5=pypi_0
-pip=20.3.4=pypi_0
-pluggy=0.13.1=pypi_0
-prompt-toolkit=2.0.10=pypi_0
-protobuf=3.18.0=pypi_0
-psutil=5.8.0=pypi_0
-ptyprocess=0.7.0=pypi_0
-pyasn1=0.4.8=pypi_0
-pyasn1-modules=0.2.8=pypi_0
-pycodestyle=2.7.0=pypi_0
-pycparser=2.20=pypi_0
-pydocstyle=5.1.1=pypi_0
-pyflakes=2.3.1=pypi_0
-pygments=2.10.0=pypi_0
-pylint=2.6.2=pypi_0
-pyparsing=2.4.7=pypi_0
-pyqt5=5.15.2=pypi_0
-pyqt5-sip=12.9.0=pypi_0
-pyqtwebengine=5.15.2=pypi_0
-pyrsistent=0.17.3=pypi_0
-python=3.5.6=h12debd9_1
-python-dateutil=2.8.2=pypi_0
-python-jsonrpc-server=0.4.0=pypi_0
-python-language-server=0.36.2=pypi_0
-pytz=2021.1=pypi_0
-pyxdg=0.27=pypi_0
-pyzmq=20.0.0=pypi_0
-qdarkstyle=3.0.2=pypi_0
-qtawesome=0.7.3=pypi_0
-qtconsole=4.7.7=pypi_0
-qtpy=1.9.0=pypi_0
-readline=8.1=h27cfd23_0
-requests=2.25.1=pypi_0
-requests-oauthlib=1.3.0=pypi_0
-rope=0.20.1=pypi_0
-rsa=4.7.2=pypi_0
-secretstorage=3.2.0=pypi_0
-setuptools=50.3.2=pypi_0
-six=1.16.0=pypi_0
-snowballstemmer=2.1.0=pypi_0
-sortedcontainers=2.4.0=pypi_0
-sphinx=3.5.4=pypi_0
-sphinxcontrib-applehelp=1.0.2=pypi_0
-sphinxcontrib-devhelp=1.0.2=pypi_0
-sphinxcontrib-htmlhelp=1.0.3=pypi_0
-sphinxcontrib-jsmath=1.0.1=pypi_0
-sphinxcontrib-qthelp=1.0.3=pypi_0
-sphinxcontrib-serializinghtml=1.1.5=pypi_0
-sphinxcontrib-websupport=1.2.4=pypi_0
-spyder=4.1.6=pypi_0
-spyder-kernels=2.1.1=pypi_0
-sqlite=3.36.0=hc218d9a_0
-tensorboard=2.4.1=pypi_0
-tensorboard-plugin-wit=1.8.0=pypi_0
-tensorflow=2.3.1=pypi_0
-tensorflow-estimator=2.6.0=pypi_0
-termcolor=1.1.0=pypi_0
-testpath=0.5.0=pypi_0
-tk=8.6.11=h1ccaba5_0
-toml=0.10.2=pypi_0
-tornado=6.1=pypi_0
-traitlets=4.3.3=pypi_0
-typed-ast=1.4.3=pypi_0
-ujson=3.2.0=pypi_0
-urllib3=1.26.7=pypi_0
-watchdog=0.10.7=pypi_0
-wcwidth=0.2.5=pypi_0
-webencodings=0.5.1=pypi_0
-werkzeug=1.0.1=pypi_0
-wheel=0.37.0=pyhd3eb1b0_1
-wrapt=1.12.1=pypi_0
-wurlitzer=3.0.2=pypi_0
-xz=5.2.5=h7b6447c_0
-yapf=0.31.0=pypi_0
-zipp=1.2.0=pypi_0
-zlib=1.2.11=h7b6447c_3