transitional_matrix.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "import numpy as np\n",
    "import matplotlib.pyplot as plt\n",
    "from tesser import cython_sr\n",
    "from tesser import cython_fit\n",
    "from tesser import util\n",
    "import importlib"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "data_dir= \"/mnt/c/Users/rodv2/Dropbox/tesser_successor/Data\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "induct_all = util.load_induct(data_dir)\n",
    "struct_all = util.load_struct(data_dir)\n",
    "\n",
    "subj_filter = f'SubjNum == {138}'\n",
    "induct_df = induct_all.query(subj_filter)\n",
    "struct_df = struct_all.query(subj_filter)\n",
    "\n",
    "n_states = len(np.unique(struct_df.objnum))"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Find actual trasnsition matrix for each participant using strductred learning DataFrame.\n",
    "* use objnum to create new matrix\n",
    "* tally each object transition as a matrix index\n",
    "* devide each row by the sum of the row\n",
    "  *  each row must sum up to 1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# df=struct_df.reset_index()\n",
    "# df =df.objnum\n",
    "# matrix = np.zeros([n_states, n_states])\n",
    "# for i, j in enumerate(df):\n",
    "#     try:\n",
    "#         matrix[j-1,df[i+1]-1] +=1\n",
    "#     except:\n",
    "#         KeyError\n",
    "\n",
    "# for row in range(n_states):\n",
    "#     matrix[row] /= np.sum(matrix[row])\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "# df=struct_df.reset_index()\n",
    "# df =df.objnum\n",
    "# matrix = np.zeros([n_states, n_states])\n",
    "# for i, j in enumerate(df):\n",
    "#     try:\n",
    "#         matrix[j-1,df[i+1]-1] +=1\n",
    "#     except:\n",
    "#         KeyError\n",
    "\n",
    "# for row in range(n_states):\n",
    "#     matrix[row] /= np.sum(matrix[row])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "cython_sr.transition_indiv(struct_df,n_states)[0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "subj_list = util.subj_list()\n",
    "d = \"/home/work-machine/Preston_Lab/tesser_successor/Data/Transitional_Matrices/\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "plt.matshow(cython_sr.transition_indiv(util.load_struct_subject(data_dir,108),n_states));"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "\n",
    "for s in subj_list:\n",
    "    subj_filter = f'SubjNum == {s}'\n",
    "    struct_df = struct_all.query(subj_filter)\n",
    "    M = cython_sr.transition_indiv(struct_df,n_states)\n",
    "    np.savetxt(d+f'Subject_{s}_tmatrix.txt', M , fmt='%.8f')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
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       "        [0.18300654, 0.16339869, 0.1503268 , 0.        , 0.0130719 ,\n",
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       "        [0.11347518, 0.11347518, 0.19148936, 0.        , 0.        ,\n",
       "         0.0212766 , 0.0070922 , 0.0070922 , 0.        , 0.0070922 ,\n",
       "         0.0070922 , 0.        , 0.        , 0.0070922 , 0.        ,\n",
       "         0.0141844 , 0.        , 0.18439716, 0.14893617, 0.17730496,\n",
       "         0.        ]])}"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cython_sr.transition_multiple(subj_list, d)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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