From b0466ba7eaac777cef5c64581381887bb73ed62a Mon Sep 17 00:00:00 2001
From: Torben Schiz <schitjws@gmail.com>
Date: Thu, 11 Jul 2024 09:24:05 +0200
Subject: [PATCH] Move dt to simulation parameters in Snapshot and snapshot
 specific dt

---
 examples/snapshot-config.json   |  6 ++++--
 micro_manager/config.py         | 13 -------------
 tests/unit/snapshot-config.json |  7 ++++---
 3 files changed, 8 insertions(+), 18 deletions(-)

diff --git a/examples/snapshot-config.json b/examples/snapshot-config.json
index 2ead3eb..f7752c2 100644
--- a/examples/snapshot-config.json
+++ b/examples/snapshot-config.json
@@ -3,8 +3,10 @@
     "coupling_params": {
         "parameter_file_name": "parameter.hdf5",
         "read_data_names": {"macro-scalar-data": "scalar", "macro-vector-data": "vector"},
-        "write_data_names": {"micro-scalar-data": "scalar", "micro-vector-data": "vector"},
-        "micro_dt": 0.1
+        "write_data_names": {"micro-scalar-data": "scalar", "micro-vector-data": "vector"}
+    },
+    "simulation_params": {
+        "micro_dt": 1.0
     },
     "snapshot_params": {
         "post_processing_file_name": "snapshot_postprocessing"
diff --git a/micro_manager/config.py b/micro_manager/config.py
index bde77ae..d6b1a3f 100644
--- a/micro_manager/config.py
+++ b/micro_manager/config.py
@@ -54,8 +54,6 @@ def __init__(self, logger, config_filename):
 
         self._output_micro_sim_time = False
 
-        self._dt = 0.01
-
         self.read_json(config_filename)
 
     def read_json(self, config_filename):
@@ -529,14 +527,3 @@ def get_postprocessing_file_name(self):
             Name of post-processing script.
         """
         return self._postprocessing_file_name
-
-    def get_time_step_size(self):
-        """
-        Get user provided time step size for the snapshot computation.
-
-        Returns
-        -------
-        dt : float
-            time_step_size.
-        """
-        return self._dt
diff --git a/tests/unit/snapshot-config.json b/tests/unit/snapshot-config.json
index 6d79621..7731cf9 100644
--- a/tests/unit/snapshot-config.json
+++ b/tests/unit/snapshot-config.json
@@ -3,9 +3,10 @@
     "coupling_params": {
         "parameter_file_name": "test_parameter.hdf5",
         "read_data_names": {"macro-scalar-data": "scalar", "macro-vector-data": "vector"},
-        "write_data_names": {"micro-scalar-data": "scalar", "micro-vector-data": "vector"},
-        "postprocessing": "True",
-        "micro_dt": 0.1
+        "write_data_names": {"micro-scalar-data": "scalar", "micro-vector-data": "vector"}
+    },
+    "simulation_params": {
+        "micro_dt": 1.0
     },
     "snapshot_params": {
         "post_processing_file_name": "snapshot_post_processing"