run-unit-tests.yml

name: Run unit tests for functions in micro_manager.py
on:
  push:
    branches:
      - main
      - develop
  pull_request:
    branches:
      - "*"
jobs:
  unit-tests:
    runs-on: ubuntu-latest
    container: precice/precice:nightly
    steps:
      - uses: actions/checkout@v4
        with:
          path: micro-manager

      - name: Install dependencies
        run: |
          apt-get -qq update
          apt-get -qq install python3-dev python3-pip git python-is-python3 pkg-config
          pip3 install --upgrade pip

      - name: Install Micro Manager and run micro_manager unit test
        working-directory: micro-manager/
        run: |
          pip3 install --user .
          pip3 uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_micro_manager.py

      - name: Install Micro Manager and run interpolation unit test
        working-directory: micro-manager/
        run: |
          pip3 install --user .[sklearn]
          pip3 uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_interpolation.py

      - name: Install Micro Manager and run micro simulation crash unit test
        working-directory: micro-manager/
        run: |
          pip3 install --user .
          pip3 uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_micro_simulation_crash_handling.py

      - name: Install Micro Manager and run HDF5 read and write unit tests
        working-directory: micro-manager/
        run: |
          pip3 install --user .[snapshot]
          pip3 uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_hdf5_functionality.py

      - name: Install Micro Manager and run snapshot_computation unit tests
        working-directory: micro-manager/
        run: |
          pip3 install --user .[snapshot]
          pip3 uninstall -y pyprecice
          cd tests/unit
          python3 -m unittest test_snapshot_computation.py