ds004478-mriqc: "HTTPSConnectionPool(host='mriqc.nimh.nih.gov', port=443): Read timed out. (read timeout=15)"

[jbwexler]

All datasets from a recent batch failed with this error. I'm wondering if the internet was down on Frontera at the time?

    Node: mriqc_wf.anatMRIQC.UploadMetrics
Working directory: /node_tmp/work_dir/mriqc/ds004478_sub-01/mriqc_wf/anatMRIQC/a63125fa58866c73d5b1e2e2859283294faa562b/UploadMetrics

Node inputs:

auth_token = 8sSYVI0XjFqacEMZ8wF4
email = <undefined>
endpoint = https://mriqc.nimh.nih.gov:443/api/v1
in_iqms = /scratch1/03201/jbwexler/openneuro_derivatives/derivatives/mriqc/ds004478-mriqc/sub-01/anat/sub-01_T1w.json
modality = undefined
strict = False

Traceback (most recent call last):
  File "/opt/conda/lib/python3.11/site-packages/mriqc/engine/plugin.py", line 64, in run_node
    result['result'] = node.run(updatehash=updatehash)
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 527, in run
    result = self._run_interface(execute=True)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 645, in _run_interface
    return self._run_command(execute)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/conda/lib/python3.11/site-packages/nipype/pipeline/engine/nodes.py", line 771, in _run_command
    raise NodeExecutionError(msg)
nipype.pipeline.engine.nodes.NodeExecutionError: Exception raised while executing Node UploadMetrics.

Traceback:
        Traceback (most recent call last):
          File "/opt/conda/lib/python3.11/site-packages/urllib3/connectionpool.py", line 537, in _make_request
            response = conn.getresponse()
                       ^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/urllib3/connection.py", line 466, in getresponse
            httplib_response = super().getresponse()
                               ^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/http/client.py", line 1390, in getresponse
            response.begin()
          File "/opt/conda/lib/python3.11/http/client.py", line 325, in begin
            version, status, reason = self._read_status()
                                      ^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/http/client.py", line 286, in _read_status
            line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/socket.py", line 706, in readinto
            return self._sock.recv_into(b)
                   ^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/ssl.py", line 1314, in recv_into
            return self.read(nbytes, buffer)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/ssl.py", line 1166, in read
            return self._sslobj.read(len, buffer)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
        TimeoutError: The read operation timed out

        The above exception was the direct cause of the following exception:

        Traceback (most recent call last):
          File "/opt/conda/lib/python3.11/site-packages/requests/adapters.py", line 486, in send
            resp = conn.urlopen(
                   ^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/urllib3/connectionpool.py", line 847, in urlopen
            retries = retries.increment(
                      ^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/urllib3/util/retry.py", line 470, in increment
            raise reraise(type(error), error, _stacktrace)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/urllib3/util/util.py", line 39, in reraise
            raise value
          File "/opt/conda/lib/python3.11/site-packages/urllib3/connectionpool.py", line 793, in urlopen
            response = self._make_request(
                       ^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/urllib3/connectionpool.py", line 539, in _make_request
            self._raise_timeout(err=e, url=url, timeout_value=read_timeout)
          File "/opt/conda/lib/python3.11/site-packages/urllib3/connectionpool.py", line 370, in _raise_timeout
            raise ReadTimeoutError(
        urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='mriqc.nimh.nih.gov', port=443): Read timed out. (read timeout=15)

        During handling of the above exception, another exception occurred:

        Traceback (most recent call last):
          File "/opt/conda/lib/python3.11/site-packages/nipype/interfaces/base/core.py", line 397, in run
            runtime = self._run_interface(runtime)
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/webapi.py", line 148, in _run_interface
            response, payload = upload_qc_metrics(
                                ^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/mriqc/interfaces/webapi.py", line 272, in upload_qc_metrics
            response = requests.post(
                       ^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/requests/api.py", line 115, in post
            return request("post", url, data=data, json=json, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/requests/api.py", line 59, in request
            return session.request(method=method, url=url, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/requests/sessions.py", line 589, in request
            resp = self.send(prep, **send_kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/requests/sessions.py", line 703, in send
            r = adapter.send(request, **kwargs)
                ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/opt/conda/lib/python3.11/site-packages/requests/adapters.py", line 532, in send
            raise ReadTimeout(e, request=request)
        requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='mriqc.nimh.nih.gov', port=443): Read timed out. (read timeout=15)