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Group-level analysis not running #15

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alavash opened this issue Apr 25, 2022 · 0 comments
Open

Group-level analysis not running #15

alavash opened this issue Apr 25, 2022 · 0 comments

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@alavash
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alavash commented Apr 25, 2022

Hi,

To get to know the pipeline, I have started analyzing the same dataset using the identical singularity image. The first-level analysis is done successfully, and I can see the *_zstat.nii.gz, *_tstat.nii.gz, *_cope.nii.gz, and *_varcope.nii.gz files for my single subjects. However, when I run the group-level analysis, no process gets initiated (i.e., nothing happens on the terminal). Is this maybe b/c the group-level code in run.py is #commented (line 166 to 173). Below I paste the code I used for first-level analysis (which has worked) and the group-level analysis (which does not run):

FIRST-LEVEL

singularity run -e /home/ds000003/analysis-0.0.3.simg
/home/ds000003/derivatives/fmriprep-1.5.4/fmriprep
/home/ds000003/derivatives/analysis participant
--participant-label 01 \
--bids-dir /home/ds000003
--space MNI152NLin2009cAsym

GROUP-LEVEL

singularity run -e /home/ds000003/analysis-0.0.3.simg
/home/ds000003/derivatives/fmriprep-1.5.4/fmriprep
/home/ds000003/derivatives/analysis group
--bids-dir /home/ds000003

Any help is very much appreciated!

Mohsen

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