Adding new class for wrapping typical ADVI workflow #6
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should be rewritten to accept any type of |
mcnaughtonadm
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added 6 commits
February 6, 2024 15:05
…fying notebooks for BMCA unit tests
…. Progress made with test_priorpredictive
…l.optimize() to calculate fluxes
…ith the updated cobra model
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This PR will address #15 .
To be able to utilize a template JSON file with the
emllcode. It is necessary to break the components needed to run the ADVI into their own methods. Here we break the scripts present in therun_hackett_inference.pyinto a separate class calledBMCA(can be renamed to whatever, this is just a placeholder) that loads thecobramodel, along with the paths to the various data sources.