diff --git a/PSI-MOD.obo b/PSI-MOD.obo index 852ec29..20403e8 100644 --- a/PSI-MOD.obo +++ b/PSI-MOD.obo @@ -1,6 +1,6 @@ format-version: 1.2 ontology: mod -date: 17:12:2020 16:11 +date: 29:01:2021 17:38 saved-by: Paul M. Thomas subsetdef: PSI-MOD-slim "subset of protein modifications" synonymtypedef: DeltaMass-label "Label from MS DeltaMass" EXACT @@ -17,9 +17,9 @@ synonymtypedef: Unimod-description "Description (full_name) from Unimod" RELATED synonymtypedef: Unimod-interim "Interim label from Unimod" RELATED synonymtypedef: UniProt-feature "Protein feature description from UniProtKB" EXACT default-namespace: PSI-MOD -remark: PSI-MOD version: 1.028.0 +remark: PSI-MOD version: 1.029.0 remark: RESID release: 75.00 -remark: ISO-8601 date: 2020-12-17 16:11Z +remark: ISO-8601 date: 2021-01-29 17:38Z remark: Annotation note 01 - "[PSI-MOD:ref]" has been replaced by PubMed:18688235. remark: Annotation note 02 - When an entry in the RESID Database is annotated with different sources because the same modification can arise from different encoded amino acids, then the PSI-MOD definition for each different source instance carries the RESID cross-reference followed by a hash symbol "#" and a 3 or 4 character label. When an entry in the RESID Database is annotated as a general modification with the same enzymatic activity producing different chemical structures depending on natural variation in the nonproteinaceous substrate, on secondary modifications that do not change the nature of the primary modification, or on a combination of a primary and one or more secondary modifications on the same residue, then the PSI-MOD definition for each different instance carries the RESID cross-reference followed by the special tag "#var". remark: Annotation note 03 - When an entry in the Unimod database is annotated as a general modification, and one or more instance sites are listed, then the PSI-MOD definition for each different site instance carries the Unimod cross-reference followed by a hash symbol and an amino acid code, "N-term" or "C-term". diff --git a/PSI-MOD.owl b/PSI-MOD.owl index d93f785..92a2075 100644 --- a/PSI-MOD.owl +++ b/PSI-MOD.owl @@ -10,7 +10,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - 17:12:2020 16:11 + 29:01:2021 17:38 PSI-MOD 1.2 Paul M. Thomas @@ -24,8 +24,8 @@ Annotation note 08 - The DeltaMass listings for free amino acids have been removed. Most Unimod entries that have not been "approved" have by general agreement not been incorporated unless there has been a request for a specific term by a PRIDE submitter. Annotation note 09 - The Open Mass Spectrometry Search Algorithm, OMSSA, enumerated list of modifications are being incorporated. The string values are synonyms with the synonymtypedef "OMSSA-label", and their integer values (which are supposed to be stable) are definition cross-references. Annotation note 10 - GNOme is the Glycan Naming and Subsumption Ontology (https://gnome.glyomics.org/), an ontology for the support of glycomics. PSI-MOD does not have all possible glycans in its entries, just the ones that are noted to be on proteins and have been requested for addition. GNOme uses GlyTouCan (http://glytoucan.org/) to provide stable accessions for glycans described at varyious degrees of characterization, including compositions (no linkage) and topologies (no carbon bond positions or anomeric configurations). - ISO-8601 date: 2020-12-17 16:11Z - PSI-MOD version: 1.028.0 + ISO-8601 date: 2021-01-29 17:38Z + PSI-MOD version: 1.029.0 RESID release: 75.00