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versions.txt
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versions.txt
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# packages in environment at /home/pmuench/anaconda3/envs/ommpipeline:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 1_gnu conda-forge
_r-mutex 1.0.1 anacondar_1 conda-forge
_sysroot_linux-64_curr_repodata_hack 3 ha9d2b57_10 conda-forge
aioeasywebdav 2.4.0 py37h89c1867_1001 conda-forge
aiohttp 3.7.4 py37h5e8e339_0 conda-forge
alsa-lib 1.2.3 h516909a_0 conda-forge
appdirs 1.4.4 pyh9f0ad1d_0 conda-forge
asteval 0.9.23 pyhd8ed1ab_0 conda-forge
async-timeout 3.0.1 py_1000 conda-forge
attrs 20.3.0 pyhd3deb0d_0 conda-forge
backports 1.0 py_2 conda-forge
backports.functools_lru_cache 1.6.1 py_0 conda-forge
bcbio-gff 0.6.6 pyh864c0ab_1 bioconda
bcftools 1.8 h4da6232_3 bioconda
bcrypt 3.2.0 py37h5e8e339_1 conda-forge
binutils 2.35.1 hdd6e379_2 conda-forge
binutils_impl_linux-64 2.35.1 h193b22a_2 conda-forge
binutils_linux-64 2.35 h67ddf6f_30 conda-forge
biom-format 2.1.10 py37ha21ca33_0 conda-forge
biopython 1.78 py37h5e8e339_2 conda-forge
blast 2.10.1 pl526he19e7b1_3 bioconda
boost 1.70.0 py37h9de70de_1 conda-forge
boost-cpp 1.70.0 h7b93d67_3 conda-forge
boto3 1.17.30 pyhd8ed1ab_0 conda-forge
botocore 1.20.30 pyhd8ed1ab_0 conda-forge
bowtie2 2.4.2 py37h8270d21_1 bioconda
brotlipy 0.7.0 py37h5e8e339_1001 conda-forge
bwa 0.7.17 hed695b0_7 bioconda
bwidget 1.9.14 ha770c72_0 conda-forge
bx-python 0.8.11 py37h73d7ac5_0 bioconda
bzip2 1.0.8 h516909a_3 conda-forge
c-ares 1.17.1 h7f98852_1 conda-forge
ca-certificates 2021.5.30 ha878542_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
cachetools 4.2.1 pyhd8ed1ab_0 conda-forge
cairo 1.16.0 h3fc0475_1005 conda-forge
capnproto 0.6.1 hfc679d8_1 conda-forge
certifi 2021.5.30 py37h89c1867_0 conda-forge
cffi 1.14.4 py37h11fe52a_0 conda-forge
chardet 4.0.0 py37h89c1867_1 conda-forge
circos 0.69.8 0 bioconda
clang_variant 1.0 default conda-forge
clangdev 5.0.0 h79c2894_1009 conda-forge
click 7.1.2 pyh9f0ad1d_0 conda-forge
cmseq 1.0.2 pyh7b7c402_0 bioconda
configargparse 1.4 pyhd8ed1ab_0 conda-forge
cryptography 3.4.6 py37h5d9358c_0 conda-forge
curl 7.71.1 he644dc0_6 conda-forge
cycler 0.10.0 py_2 conda-forge
datrie 0.8.2 py37h8f50634_1 conda-forge
decorator 4.4.2 py_0 conda-forge
deeptools 3.5.0 py_0 bioconda
deeptoolsintervals 0.1.9 py37hf01694f_2 bioconda
dendropy 4.5.2 pyh3252c3a_0 bioconda
diamond 2.0.8 h56fc30b_0 bioconda
docutils 0.16 py37h89c1867_3 conda-forge
dropbox 10.4.1 pyh9f0ad1d_0 conda-forge
eigen 3.3.7 hc9558a2_1001 conda-forge
entrez-direct 13.9 pl526h375a9b1_1 bioconda
enum34 1.1.10 py37hc8dfbb8_2 conda-forge
expat 2.2.10 h9c3ff4c_0 conda-forge
fastani 1.32 he1c1bb9_0 bioconda
fastp 0.20.1 h8b12597_0 bioconda
fasttree 2.1.10 h516909a_4 bioconda
filechunkio 1.8 py_2 conda-forge
fontconfig 2.13.1 hba837de_1004 conda-forge
fortran-compiler 1.1.1 he991be0_0 conda-forge
freetype 2.10.4 h0708190_1 conda-forge
fribidi 1.0.10 h36c2ea0_0 conda-forge
ftputil 5.0.0 pyhd8ed1ab_0 conda-forge
future 0.18.2 py37h89c1867_3 conda-forge
gcc_impl_linux-64 7.5.0 hda68d29_13 conda-forge
gcc_linux-64 7.5.0 h47867f9_30 conda-forge
gettext 0.19.8.1 hf34092f_1004 conda-forge
gfortran_impl_linux-64 7.5.0 h56cb351_18 conda-forge
gfortran_linux-64 7.5.0 h78c8a43_30 conda-forge
ghostscript 9.18 1 bioconda
giflib 5.2.1 h36c2ea0_2 conda-forge
gitdb 4.0.5 pyhd8ed1ab_1 conda-forge
gitpython 3.1.14 pyhd8ed1ab_0 conda-forge
glib 2.66.0 h0dae87d_0 conda-forge
glimmerhmm 3.0.4 pl526hf484d3e_3 bioconda
google-api-core 1.25.1 pyhd8ed1ab_0 conda-forge
google-auth 1.24.0 pyhd3deb0d_0 conda-forge
google-cloud-core 1.5.0 pyhd3deb0d_0 conda-forge
google-cloud-storage 1.31.0 pyh9f0ad1d_0 conda-forge
google-crc32c 1.1.2 py37hab72019_0 conda-forge
google-resumable-media 1.2.0 pyhd3deb0d_0 conda-forge
googleapis-common-protos 1.52.0 py37h89c1867_1 conda-forge
graphite2 1.3.13 h58526e2_1001 conda-forge
graphviz 2.42.3 h0511662_0 conda-forge
grpcio 1.36.1 py37hb27c1af_0 conda-forge
gsl 2.6 he838d99_2 conda-forge
gxx_impl_linux-64 7.5.0 h64c220c_13 conda-forge
gxx_linux-64 7.5.0 h555fc39_30 conda-forge
h5py 3.1.0 nompi_py37h1e651dc_100 conda-forge
harfbuzz 2.7.2 hee91db6_0 conda-forge
hdf5 1.10.6 nompi_h7c3c948_1111 conda-forge
htslib 1.10.2 hd3b49d5_1 bioconda
icu 67.1 he1b5a44_0 conda-forge
idna 2.10 pyh9f0ad1d_0 conda-forge
importlib-metadata 3.7.3 py37h89c1867_0 conda-forge
iqtree 2.0.3 h176a8bc_1 bioconda
irep 1.1.7 pyh24bf2e0_1 bioconda
jinja2 2.11.3 pyh44b312d_0 conda-forge
jmespath 0.10.0 pyh9f0ad1d_0 conda-forge
joblib 1.0.1 pyhd8ed1ab_0 conda-forge
jpeg 9d h36c2ea0_0 conda-forge
jsonschema 3.2.0 pyhd8ed1ab_3 conda-forge
k8 0.2.5 h9a82719_1 bioconda
kernel-headers_linux-64 3.10.0 h77966d4_10 conda-forge
kiwisolver 1.3.1 py37h2527ec5_1 conda-forge
krb5 1.17.2 h926e7f8_0 conda-forge
lcms2 2.12 hddcbb42_0 conda-forge
ld_impl_linux-64 2.35.1 hea4e1c9_2 conda-forge
libblas 3.9.0 8_openblas conda-forge
libcblas 3.9.0 8_openblas conda-forge
libcrc32c 1.1.1 h9c3ff4c_2 conda-forge
libcurl 7.71.1 hcdd3856_6 conda-forge
libdeflate 1.6 h516909a_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libffi 3.2.1 he1b5a44_1007 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-ng 9.3.0 h2828fa1_18 conda-forge
libgd 2.2.5 h6e6070c_1008 conda-forge
libgfortran-ng 7.5.0 h14aa051_18 conda-forge
libgfortran4 7.5.0 h14aa051_18 conda-forge
libgomp 9.3.0 h2828fa1_18 conda-forge
libiconv 1.16 h516909a_0 conda-forge
liblapack 3.9.0 8_openblas conda-forge
libnghttp2 1.43.0 h812cca2_0 conda-forge
libopenblas 0.3.12 pthreads_hb3c22a3_1 conda-forge
libpng 1.6.37 h21135ba_2 conda-forge
libprotobuf 3.15.6 h780b84a_0 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libssh2 1.9.0 ha56f1ee_6 conda-forge
libstdcxx-ng 9.3.0 h6de172a_18 conda-forge
libtiff 4.2.0 hdc55705_0 conda-forge
libtool 2.4.6 h58526e2_1007 conda-forge
libuuid 2.32.1 h7f98852_1000 conda-forge
libwebp 1.2.0 h3452ae3_0 conda-forge
libwebp-base 1.2.0 h7f98852_2 conda-forge
libxcb 1.13 h7f98852_1003 conda-forge
libxml2 2.9.10 h68273f3_2 conda-forge
libxslt 1.1.33 hf705e74_1 conda-forge
lmfit 1.0.2 pyhd8ed1ab_0 conda-forge
lofreq 2.1.5 py37hdcd9b1b_3 bioconda
lz4-c 1.9.3 h9c3ff4c_0 conda-forge
lzo 2.10 h516909a_1000 conda-forge
mafft 7.475 h516909a_0 bioconda
make 4.3 hd18ef5c_1 conda-forge
markupsafe 1.1.1 py37h5e8e339_3 conda-forge
mash 2.3 ha61e061_0 bioconda
matplotlib 3.3.2 0 conda-forge
matplotlib-base 3.3.2 py37hc9afd2a_1 conda-forge
megahit 1.2.9 h8b12597_0 bioconda
meme 4.11.2 py37pl526h664da7e_6 bioconda
metaphlan 3.0.7 pyh7b7c402_1 bioconda
minimap2 2.17 hed695b0_3 bioconda
multidict 5.1.0 py37h5e8e339_1 conda-forge
muscle 3.8.1551 hc9558a2_5 bioconda
ncbi-genome-download 0.3.0 pyh864c0ab_1 bioconda
ncurses 6.2 h58526e2_4 conda-forge
networkx 2.5 py_0 conda-forge
numpy 1.20.1 py37haa41c4c_0 conda-forge
olefile 0.46 pyh9f0ad1d_1 conda-forge
openjdk 11.0.8 hacce0ff_0 conda-forge
openmp 5.0.0 0 conda-forge
openssl 1.1.1k h7f98852_0 conda-forge
pandas 1.2.3 py37hdc94413_0 conda-forge
pango 1.42.4 h7062337_4 conda-forge
paramiko 2.7.2 pyh9f0ad1d_0 conda-forge
patsy 0.5.1 py_0 conda-forge
pcre 8.44 he1b5a44_0 conda-forge
pcre2 10.35 h2f06484_0 conda-forge
perl 5.26.2 h36c2ea0_1008 conda-forge
perl-app-cpanminus 1.7044 pl526_1 bioconda
perl-archive-tar 2.32 pl526_0 bioconda
perl-autoloader 5.74 pl526_2 bioconda
perl-base 2.23 pl526_1 bioconda
perl-business-isbn 3.004 pl526_0 bioconda
perl-business-isbn-data 20140910.003 pl526_0 bioconda
perl-carp 1.38 pl526_3 bioconda
perl-cgi 4.44 pl526h14c3975_1 bioconda
perl-clone 0.42 pl526h516909a_0 bioconda
perl-common-sense 3.74 pl526_2 bioconda
perl-compress-raw-bzip2 2.087 pl526he1b5a44_0 bioconda
perl-compress-raw-zlib 2.087 pl526hc9558a2_0 bioconda
perl-config-general 2.63 pl526_0 bioconda
perl-constant 1.33 pl526_1 bioconda
perl-data-dumper 2.173 pl526_0 bioconda
perl-digest-hmac 1.03 pl526_3 bioconda
perl-digest-md5 2.55 pl526_0 bioconda
perl-digest-perl-md5 1.9 pl526_1 bioconda
perl-dynaloader 1.25 pl526_1 bioconda
perl-encode 2.88 pl526_1 bioconda
perl-encode-locale 1.05 pl526_6 bioconda
perl-exporter 5.72 pl526_1 bioconda
perl-exporter-tiny 1.002001 pl526_0 bioconda
perl-extutils-makemaker 7.36 pl526_1 bioconda
perl-file-listing 6.04 pl526_1 bioconda
perl-file-path 2.16 pl526_0 bioconda
perl-file-temp 0.2304 pl526_2 bioconda
perl-font-ttf 1.06 pl526_0 bioconda
perl-gd 2.71 pl526he860b03_0 bioconda
perl-html-parser 3.72 pl526h6bb024c_5 bioconda
perl-html-tagset 3.20 pl526_3 bioconda
perl-html-template 2.97 pl526_1 bioconda
perl-html-tree 5.07 pl526_1 bioconda
perl-http-cookies 6.04 pl526_0 bioconda
perl-http-daemon 6.01 pl526_1 bioconda
perl-http-date 6.02 pl526_3 bioconda
perl-http-message 6.18 pl526_0 bioconda
perl-http-negotiate 6.01 pl526_3 bioconda
perl-io-compress 2.087 pl526he1b5a44_0 bioconda
perl-io-html 1.001 pl526_2 bioconda
perl-io-socket-ssl 2.066 pl526_0 bioconda
perl-io-string 1.08 pl526_3 bioconda
perl-io-zlib 1.10 pl526_2 bioconda
perl-json 4.02 pl526_0 bioconda
perl-json-xs 2.34 pl526h6bb024c_3 bioconda
perl-libwww-perl 6.39 pl526_0 bioconda
perl-list-moreutils 0.428 pl526_1 bioconda
perl-list-moreutils-xs 0.428 pl526_0 bioconda
perl-lwp-mediatypes 6.04 pl526_0 bioconda
perl-lwp-protocol-https 6.07 pl526_4 bioconda
perl-math-bezier 0.01 pl526_1 bioconda
perl-math-round 0.07 pl526_1 bioconda
perl-math-vecstat 0.08 pl526_1 bioconda
perl-mime-base64 3.15 pl526_1 bioconda
perl-module-implementation 0.09 pl526_2 bioconda
perl-module-runtime 0.016 pl526_1 bioconda
perl-mozilla-ca 20180117 pl526_1 bioconda
perl-net-http 6.19 pl526_0 bioconda
perl-net-ssleay 1.88 pl526h90d6eec_0 bioconda
perl-ntlm 1.09 pl526_4 bioconda
perl-number-format 1.75 pl526_3 bioconda
perl-params-validate 1.29 pl526h14c3975_1 bioconda
perl-parent 0.236 pl526_1 bioconda
perl-pathtools 3.75 pl526h14c3975_1 bioconda
perl-readonly 2.05 pl526_0 bioconda
perl-regexp-common 2017060201 pl526_0 bioconda
perl-scalar-list-utils 1.52 pl526h516909a_0 bioconda
perl-set-intspan 1.19 pl526_1 bioconda
perl-socket 2.027 pl526_1 bioconda
perl-statistics-basic 1.6611 pl526_2 bioconda
perl-storable 3.15 pl526h14c3975_0 bioconda
perl-svg 2.84 pl526_0 bioconda
perl-test-requiresinternet 0.05 pl526_0 bioconda
perl-text-format 0.59 pl526_2 bioconda
perl-time-hires 1.9760 pl526h14c3975_1 bioconda
perl-time-local 1.28 pl526_1 bioconda
perl-try-tiny 0.30 pl526_1 bioconda
perl-types-serialiser 1.0 pl526_2 bioconda
perl-uri 1.76 pl526_0 bioconda
perl-www-robotrules 6.02 pl526_3 bioconda
perl-xml-namespacesupport 1.12 pl526_0 bioconda
perl-xml-parser 2.44 pl526h4e0c4b3_7 bioconda
perl-xml-sax 1.02 pl526_0 bioconda
perl-xml-sax-base 1.09 pl526_0 bioconda
perl-xml-sax-expat 0.51 pl526_3 bioconda
perl-xml-simple 2.25 pl526_1 bioconda
perl-xsloader 0.24 pl526_0 bioconda
perl-yaml 1.29 pl526_0 bioconda
phylophlan 3.0.2 py_0 bioconda
picard 2.23.8 0 bioconda
pillow 8.1.2 py37h4600e1f_0 conda-forge
pip 21.0.1 pyhd8ed1ab_0 conda-forge
pixman 0.38.0 h516909a_1003 conda-forge
plotly 4.14.3 pyh44b312d_0 conda-forge
prettytable 2.1.0 pyhd8ed1ab_0 conda-forge
protobuf 3.15.6 py37hcd2ae1e_0 conda-forge
psutil 5.8.0 py37h5e8e339_1 conda-forge
pthread-stubs 0.4 h36c2ea0_1001 conda-forge
py2bit 0.3.0 py37hf01694f_4 bioconda
pyasn1 0.4.8 py_0 conda-forge
pyasn1-modules 0.2.7 py_0 conda-forge
pybigwig 0.3.18 py37h960e705_0 bioconda
pycparser 2.20 pyh9f0ad1d_2 conda-forge
pyfaidx 0.5.9.1 pyh864c0ab_1 bioconda
pygments 2.8.1 pyhd8ed1ab_0 conda-forge
pygraphviz 1.7 py37h0b1d2a2_0 conda-forge
pynacl 1.4.0 py37h5e8e339_2 conda-forge
pyopenssl 20.0.1 pyhd8ed1ab_0 conda-forge
pyparsing 2.4.7 pyh9f0ad1d_0 conda-forge
pyrsistent 0.17.3 py37h5e8e339_2 conda-forge
pysam 0.16.0.1 py37hc334e0b_1 bioconda
pysftp 0.2.9 py_1 conda-forge
pysocks 1.7.1 py37h89c1867_3 conda-forge
python 3.7.8 h8bdb77d_2_cpython conda-forge
python-dateutil 2.8.1 py_0 conda-forge
python-irodsclient 0.8.6 pyhd8ed1ab_0 conda-forge
python-lzo 1.12 py37he0a3664_1003 conda-forge
python_abi 3.7 1_cp37m conda-forge
pytz 2021.1 pyhd8ed1ab_0 conda-forge
pyyaml 5.4.1 py37h5e8e339_0 conda-forge
quast 5.0.2 py37pl526hb5aa323_2 bioconda
r 3.6.0 r36_0 r
r-base 3.6.3 he766273_3 conda-forge
r-boot 1.3_20 r36h6115d3f_0 r
r-class 7.3_15 r36h96ca727_0 r
r-cluster 2.0.8 r36ha65eedd_0 r
r-codetools 0.2_16 r36h6115d3f_0 r
r-foreign 0.8_71 r36h96ca727_0 r
r-kernsmooth 2.23_15 r36ha65eedd_4 r
r-lattice 0.20_38 r36h96ca727_0 r
r-mass 7.3_51.3 r36h96ca727_0 r
r-matrix 1.2_17 r36h96ca727_0 r
r-mgcv 1.8_28 r36h96ca727_0 r
r-nlme 3.1_139 r36ha65eedd_0 r
r-nnet 7.3_12 r36h96ca727_0 r
r-recommended 3.6.0 r36_0 r
r-rpart 4.1_15 r36h96ca727_0 r
r-spatial 7.3_11 r36h96ca727_4 r
r-survival 2.44_1.1 r36h96ca727_0 r
ratelimiter 1.2.0 py_1002 conda-forge
raxml 8.2.12 h516909a_2 bioconda
readline 8.0 he28a2e2_2 conda-forge
requests 2.25.1 pyhd3deb0d_0 conda-forge
retrying 1.3.3 py_2 conda-forge
rsa 4.7.2 pyh44b312d_0 conda-forge
s3transfer 0.3.4 pyhd8ed1ab_0 conda-forge
samtools 1.10 h2e538c0_3 bioconda
scipy 1.5.3 py37h8911b10_0 conda-forge
seaborn 0.11.1 hd8ed1ab_1 conda-forge
seaborn-base 0.11.1 pyhd8ed1ab_1 conda-forge
sed 4.8 he412f7d_0 conda-forge
seqkit 0.15.0 0 bioconda
seqtk 1.3 h5bf99c6_3 bioconda
setuptools 49.6.0 py37h89c1867_3 conda-forge
simplejson 3.17.2 py37h5e8e339_2 conda-forge
six 1.15.0 pyh9f0ad1d_0 conda-forge
smmap 3.0.5 pyh44b312d_0 conda-forge
snakemake 5.5.4 1 bioconda
snakemake-minimal 5.5.4 py_2 bioconda
spades 3.15.2 h633aebb_0 bioconda
sqlite 3.34.0 h74cdb3f_0 conda-forge
statsmodels 0.12.2 py37h902c9e0_0 conda-forge
sysroot_linux-64 2.17 h77966d4_10 conda-forge
tbb 2021.1.1 h4bd325d_1 conda-forge
tk 8.6.10 h21135ba_1 conda-forge
tktable 2.10 hb7b940f_3 conda-forge
tornado 6.1 py37h5e8e339_1 conda-forge
trimal 1.4.1 hc9558a2_4 bioconda
typing-extensions 3.7.4.3 0 conda-forge
typing_extensions 3.7.4.3 py_0 conda-forge
uncertainties 3.1.5 pyhd8ed1ab_0 conda-forge
urllib3 1.26.4 pyhd8ed1ab_0 conda-forge
wcwidth 0.2.5 pyh9f0ad1d_2 conda-forge
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wrapt 1.12.1 py37h5e8e339_3 conda-forge
xmlrunner 1.7.7 py_0 conda-forge
xorg-fixesproto 5.0 h14c3975_1002 conda-forge
xorg-inputproto 2.3.2 h7f98852_1002 conda-forge
xorg-kbproto 1.0.7 h7f98852_1002 conda-forge
xorg-libice 1.0.10 h7f98852_0 conda-forge
xorg-libsm 1.2.3 hd9c2040_1000 conda-forge
xorg-libx11 1.6.12 h516909a_0 conda-forge
xorg-libxau 1.0.9 h7f98852_0 conda-forge
xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge
xorg-libxext 1.3.4 h516909a_0 conda-forge
xorg-libxfixes 5.0.3 h516909a_1004 conda-forge
xorg-libxi 1.7.10 h516909a_0 conda-forge
xorg-libxpm 3.5.13 h516909a_0 conda-forge
xorg-libxrender 0.9.10 h516909a_1002 conda-forge
xorg-libxt 1.1.5 h516909a_1003 conda-forge
xorg-libxtst 1.2.3 h516909a_1002 conda-forge
xorg-recordproto 1.14.2 h516909a_1002 conda-forge
xorg-renderproto 0.11.1 h7f98852_1002 conda-forge
xorg-xextproto 7.3.0 h7f98852_1002 conda-forge
xorg-xproto 7.0.31 h7f98852_1007 conda-forge
xz 5.2.5 h516909a_1 conda-forge
yaml 0.2.5 h516909a_0 conda-forge
yarl 1.6.3 py37h5e8e339_1 conda-forge
zipp 3.4.1 pyhd8ed1ab_0 conda-forge
zlib 1.2.11 h516909a_1010 conda-forge
zstd 1.4.9 ha95c52a_0 conda-forge