.travis.yml

dist: xenial
language: python
python:
  - "2.7"
before_install:
  - WORKDIR=$(pwd)
  - mkdir ${WORKDIR}/test_bin
install:
  - wget https://github.com/samtools/bcftools/releases/download/1.9/bcftools-1.9.tar.bz2 -O bcftools-1.9.tar.bz2
  - mkdir bcftools-1.9; tar -xjf bcftools-1.9.tar.bz2 -C bcftools-1.9 --strip-components=1
  - sudo ${WORKDIR}/bcftools-1.9/htslib-1.9/configure
  - sudo make -C ${WORKDIR}/bcftools-1.9/htslib-1.9
  - sudo make install -C ${WORKDIR}/bcftools-1.9/htslib-1.9
  - sudo cp ${WORKDIR}/bcftools-1.9/htslib-1.9/tabix ${WORKDIR}/test_bin
  - sudo ${WORKDIR}/bcftools-1.9/configure
  - sudo make -C ${WORKDIR}/bcftools-1.9
  - sudo make install -C ${WORKDIR}/bcftools-1.9
  - sudo cp ${WORKDIR}/bcftools-1.9/bcftools ${WORKDIR}/test_bin

  - export PATH=$WORKDIR/test_bin:$PATH
  - bcftools --version
  - tabix --version
  - python setup.py install
  - pip install coveralls
script:
  - coverage run --omit=*/site-packages/*,*/tests/* -m unittest discover -s tests
after_success:
  coveralls