diff --git a/README.mkd b/README.mkd index 95cd909..941b7ed 100644 --- a/README.mkd +++ b/README.mkd @@ -4,7 +4,7 @@ # genipe - A Python module to perform genome-wide imputation analysis -*Version 1.2.1* +*Version 1.2.2* The `genipe` module (standing for **GEN**ome-wide **I**mputation **P**ipelin**E**) includes a script (named `genipe-launcher`) that @@ -40,7 +40,7 @@ The tool requires a standard [Python](http://python.org/) 3 installation with the following modules: * `numpy` version 1.8.2 and latest -* `jinja2` version 2.7.3 and latest +* `Jinja2` version 2.7.3 and latest * `pandas` version 0.15.2 and latest * `setuptools` version 12.0.5 and latest @@ -103,9 +103,10 @@ usage: genipe-launcher [-h] [-v] [--debug] [--thread THREAD] --bfile PREFIX [--probability FLOAT] [--completion FLOAT] [--info FLOAT] [--report-number NB] [--report-title TITLE] [--report-author AUTHOR] + [--report-background BACKGROUND] Execute the genome-wide imputation pipeline. This script is part of the -'genipe' package, version 1.2.1. +'genipe' package, version 1.2.2. optional arguments: -h, --help show this help message and exit @@ -174,6 +175,10 @@ Automatic Report Options: imputation] --report-author AUTHOR The report author. [Automatically generated by genipe] + --report-background BACKGROUND + The report background section (can either be a string + or a file containing the background. [General + background] ``` @@ -212,7 +217,7 @@ usage: imputed-stats [-h] [-v] {cox,linear,logistic,mixedlm,skat} ... Performs statistical analysis on imputed data (either SKAT analysis, or linear, logistic or survival regression). This script is part of the 'genipe' -package, version 1.2.1). +package, version 1.2.2). optional arguments: -h, --help show this help message and exit diff --git a/setup.py b/setup.py index 44eba76..50ade53 100644 --- a/setup.py +++ b/setup.py @@ -19,7 +19,7 @@ MAJOR = 1 MINOR = 2 -MICRO = 1 +MICRO = 2 VERSION = "{0}.{1}.{2}".format(MAJOR, MINOR, MICRO)