diff --git a/topics/statistics/tutorials/loris_model/README.md b/topics/statistics/tutorials/loris_model/README.md new file mode 100644 index 00000000000000..ba8f6d1991e478 --- /dev/null +++ b/topics/statistics/tutorials/loris_model/README.md @@ -0,0 +1,2 @@ +# Tutorial_Galaxy-Pycaret +A galaxy tutorial to crete and run a logistic regression classifier with LORIS dataset (Chang et al., 2024) diff --git a/topics/statistics/tutorials/loris_model/data-library.yaml b/topics/statistics/tutorials/loris_model/data-library.yaml index 1299cd1eb37872..659ce885d69116 100644 --- a/topics/statistics/tutorials/loris_model/data-library.yaml +++ b/topics/statistics/tutorials/loris_model/data-library.yaml @@ -13,10 +13,6 @@ items: - name: 'DOI: 10.5281/zenodo.13885908' description: latest items: - - url: https://zenodo.org/api/records/13885908/files/Chowell_test_No_Response.tsv/content - src: url - ext: '' - info: https://zenodo.org/records/13885908 - url: https://zenodo.org/api/records/13885908/files/Chowell_train_Response.tsv/content src: url ext: '' @@ -25,11 +21,3 @@ items: src: url ext: '' info: https://zenodo.org/records/13885908 - - url: https://zenodo.org/api/records/13885908/files/MSK1_Response.tsv/content - src: url - ext: '' - info: https://zenodo.org/records/13885908 - - url: https://zenodo.org/api/records/13885908/files/MSK1_No_Response.tsv/content - src: url - ext: '' - info: https://zenodo.org/records/13885908 diff --git a/topics/statistics/tutorials/loris_model/workflows/main_workflow-tests.yml b/topics/statistics/tutorials/loris_model/workflows/main_workflow-tests.yml new file mode 100644 index 00000000000000..74b0706d373dd9 --- /dev/null +++ b/topics/statistics/tutorials/loris_model/workflows/main_workflow-tests.yml @@ -0,0 +1,19 @@ +- doc: Test the PyCaret comparison workflow + job: + 'chowell_train': + location: https://zenodo.org/records/13885908/files/Chowell_train_Response.tsv + class: File + filetype: .tsv + 'chowell_test': + location: https://zenodo.org/records/13885908/files/Chowell_test_Response.tsv + class: File + filetype: .tsv + outputs: + PyCaret_Model_Comparison_Result: + asserts: + has_text: + text: "Model Training Report" + PyCaret_Model_Comparison_best_model: + asserts: + has_text: + text: "pycaret.internal.pipeline" diff --git a/topics/statistics/tutorials/loris_model/workflows/main_workflow.ga b/topics/statistics/tutorials/loris_model/workflows/main_workflow.ga index 776eb84675f6d1..671916daa9d1e3 100644 --- a/topics/statistics/tutorials/loris_model/workflows/main_workflow.ga +++ b/topics/statistics/tutorials/loris_model/workflows/main_workflow.ga @@ -1 +1,153 @@ -{"a_galaxy_workflow": "true", "annotation": "Reproducing the model published by Chang et al, 2024 (https://www.nature.com/articles/s43018-024-00772-7)", "comments": [], "creator": [{"class": "Person", "identifier": "https://orcid.org/0000-0002-4403-6684", "name": "Paulo Cilas Morais Lyra Junior"}], "format-version": 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