pyproject.toml

[build-system]
# Minimum requirements for the build system to execute
requires = [
	 "setuptools >= 67.8.0",
	 "pip>=23.1",
	 "wheel",
	 "Cython",
	 "numpy"
	 ]
# What should the build-backend be?
build-backend = "setuptools.build_meta"

[project]
name = "cajal"
version = "0.3.0"
description="A library for multi-modal cell morphology analyses using Gromov-Wasserstein (GW) distance."
readme="./README.md"
requires-python=">=3.9"


authors= [ { name="Pablo Cámara", email='pcamara@pennmedicine.upenn.edu' } ]
classifiers=[
	'License :: OSI Approved :: MIT License',
        'Programming Language :: Python :: 3',
        'Framework :: Jupyter',
        'Topic :: Scientific/Engineering :: Bio-Informatics'
    ]

dependencies = [
	"igraph",
        "leidenalg",
        "networkx>=2.8.8",
        "numpy",
	"cython >= 3",
        "pathos",
	"tqdm>=4.64.1",	
        "potpourri3d",
        "python-louvain",
        "scipy>=1.10",
        "scikit-image",
        "tifffile",
        "trimesh",
        "umap-learn>=0.5.3"
	]

[project.optional-dependencies]
dev = [
    "mypy>=0.991",
    "pytest >= 7.2.1",
    "pre-commit >= 2.20.0"
]

vis = [
    "matplotlib >= 3.7.0",
    "networkx",
    "navis",
    "mpltern"
]

[project.license]
file="./LICENSE.md"

[project.urls]
git-repo="https://github.com/CamaraLab/CAJAL"
readthedocs="https://cajal.readthedocs.io/en/latest/"
biorxiv="https://www.biorxiv.org/content/10.1101/2022.05.19.492525v2"

[tool.black]
force-exclude = '''
/(
   \.git
 | \.mypy_cache
 | _build
 | build
 | dist
 | stubs
 | pyproject.toml
 | \.pre-commit-config.yaml
)/
'''