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background matrix #18

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distilledchild opened this issue Sep 9, 2021 · 2 comments
Open

background matrix #18

distilledchild opened this issue Sep 9, 2021 · 2 comments

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@distilledchild
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I am curious that I can get background matrix for the reference, mRatNor1, https://vgp.github.io/genomeark/Rattus_norvegicus/

Can I make background matrix myself?
@XiaoTaoWang
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Hi, this is Xiaotao, we recently developed a new method called EagleC (https://github.com/XiaoTaoWang/EagleC) for detecting SVs from 3C-based data. EagleC does not need a background matrix for SV detection and support any genome in theory. Take a look and hope it is useful in your project!

@distilledchild
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@XiaoTaoWang Thank you for the tool, and I will try that one! Thank you.

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@XiaoTaoWang @distilledchild