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Trying to follow the vignette as described here (https://github.com/parashardhapola/scarf/issues/new?assignees=&labels=&template=bug_report.md&title=) for scrna-seq analysis. The error message is a little ambiguous and my best guess is either an issue with loading certain libraries or incompatible dependancies.
--------------------------------------------------------------------------- OSError Traceback (most recent call last) _ctypes/callbacks.c in 'calling callback function'() /opt/conda/lib/python3.7/site-packages/threadpoolctl.py in match_library_callback(info, size, data) 546 547 # Store the library controller if it is supported and selected --> 548 self._make_controller_from_path(filepath) 549 return 0 550 /opt/conda/lib/python3.7/site-packages/threadpoolctl.py in _make_controller_from_path(self, filepath) 671 prefix=prefix, 672 user_api=user_api, --> 673 internal_api=internal_api, 674 ) 675 self.lib_controllers.append(lib_controller) /opt/conda/lib/python3.7/site-packages/threadpoolctl.py in __init__(self, **kwargs) 784 785 def __init__(self, **kwargs): --> 786 super().__init__(**kwargs) 787 self.threading_layer = self._get_threading_layer() 788 self.architecture = self._get_architecture() /opt/conda/lib/python3.7/site-packages/threadpoolctl.py in __init__(self, filepath, prefix, user_api, internal_api) 752 self.prefix = prefix 753 self.filepath = filepath --> 754 self._dynlib = ctypes.CDLL(filepath, mode=_RTLD_NOLOAD) 755 self.version = self.get_version() 756 /opt/conda/lib/python3.7/ctypes/__init__.py in __init__(self, name, mode, handle, use_errno, use_last_error) 362 363 if handle is None: --> 364 self._handle = _dlopen(self._name, mode) 365 else: 366 self._handle = handle OSError: dlopen() error
To Reproduce
ds.make_graph( feat_key='hvgs', k=11, dims=15, n_centroids=100 )
Scarf and Python version
Python 3.7.12 Scarf 0.26.3 Numpy 1.20.0 Scipy 1.7.3
The text was updated successfully, but these errors were encountered:
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Trying to follow the vignette as described here (https://github.com/parashardhapola/scarf/issues/new?assignees=&labels=&template=bug_report.md&title=) for scrna-seq analysis. The error message is a little ambiguous and my best guess is either an issue with loading certain libraries or incompatible dependancies.
To Reproduce
Scarf and Python version
The text was updated successfully, but these errors were encountered: