From 23a49e78d1937c3091b96099c511ba9445c7600a Mon Sep 17 00:00:00 2001
From: Wei Ji <23487320+weiji14@users.noreply.github.com>
Date: Wed, 27 Apr 2022 15:30:17 -0400
Subject: [PATCH 1/8] :whale: Start Dockerfile for pytorch-notebook

Another GPU-enabled docker image for running deep learning!
---
 .github/workflows/Build.yml                 |  2 +-
 .github/workflows/CondaLock.yml             | 15 +++++++++---
 .github/workflows/Publish.yml               |  2 +-
 .github/workflows/Test.yml                  |  2 +-
 Makefile                                    | 10 +++++++-
 README.md                                   |  3 ++-
 pangeo-notebook/environment.yml             |  3 +++
 pytorch-notebook/Dockerfile                 | 11 +++++++++
 pytorch-notebook/apt.txt                    |  2 ++
 pytorch-notebook/environment.yml            |  8 +++++++
 pytorch-notebook/jupyter_notebook_config.py |  5 ++++
 pytorch-notebook/start                      | 12 ++++++++++
 tests/test_pytorch-notebook.py              | 26 +++++++++++++++++++++
 13 files changed, 93 insertions(+), 8 deletions(-)
 create mode 100644 pytorch-notebook/Dockerfile
 create mode 100644 pytorch-notebook/apt.txt
 create mode 100644 pytorch-notebook/environment.yml
 create mode 100644 pytorch-notebook/jupyter_notebook_config.py
 create mode 100644 pytorch-notebook/start
 create mode 100644 tests/test_pytorch-notebook.py

diff --git a/.github/workflows/Build.yml b/.github/workflows/Build.yml
index 429b455c..1015b732 100644
--- a/.github/workflows/Build.yml
+++ b/.github/workflows/Build.yml
@@ -49,7 +49,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        IMAGE: [base-notebook, pangeo-notebook, ml-notebook]
+        IMAGE: [base-notebook, pangeo-notebook, ml-notebook, pytorch-notebook]
     name: ${{ matrix.IMAGE }}
     runs-on: ubuntu-latest
     steps:
diff --git a/.github/workflows/CondaLock.yml b/.github/workflows/CondaLock.yml
index eb947192..32ae4c0f 100644
--- a/.github/workflows/CondaLock.yml
+++ b/.github/workflows/CondaLock.yml
@@ -9,6 +9,10 @@ on:
 jobs:
   condalock:
     runs-on: ubuntu-latest
+    defaults:
+      run:
+        shell: bash -l {0}
+
     steps:
       - name: Checkout Repository
         uses: actions/checkout@v2
@@ -23,6 +27,7 @@ jobs:
           echo "---\nbase-notebook:\n---\n" && cat base-notebook/environment.yml
           echo "---\npangeo-notebook:\n---\n" && cat pangeo-notebook/environment.yml
           echo "---\nml-notebook:\n---\n" && cat ml-notebook/environment.yml
+          echo "---\npytorch-notebook:\n---\n" && cat pytorch-notebook/environment.yml
 
       - name: Cache conda
         uses: actions/cache@v2
@@ -46,7 +51,6 @@ jobs:
 
       # Could run as single step in parallel, but would complicate logs...
       - name: Run conda-lock base-notebook
-        shell: bash -l {0}
         run: |
           conda clean --all --yes --force-pkgs-dirs
           cd base-notebook
@@ -54,7 +58,6 @@ jobs:
           ../generate-packages-list.py conda-linux-64.lock > packages.txt
 
       - name: Run conda-lock pangeo-notebook
-        shell: bash -l {0}
         run: |
           conda clean --all --yes --force-pkgs-dirs
           cd pangeo-notebook
@@ -62,13 +65,19 @@ jobs:
           ../generate-packages-list.py conda-linux-64.lock > packages.txt
 
       - name: Run conda-lock ml-notebook
-        shell: bash -l {0}
         run: |
           conda clean --all --yes --force-pkgs-dirs
           cd ml-notebook
           conda-lock lock --mamba -f environment.yml -f ../pangeo-notebook/environment.yml -p linux-64
           ../generate-packages-list.py conda-linux-64.lock > packages.txt
 
+      - name: Run conda-lock pytorch-notebook
+        run: |
+          conda clean --all --yes --force-pkgs-dirs
+          cd pytorch-notebook
+          conda-lock lock --mamba -f environment.yml -f ../pangeo-notebook/environment.yml -p linux-64
+          ../generate-packages-list.py conda-linux-64.lock > packages.txt
+
       # Commit the change to the PR branch (currently fails if no modified files)
       - name: Commit condalock files to PR
         run: |
diff --git a/.github/workflows/Publish.yml b/.github/workflows/Publish.yml
index e443b681..33f03089 100644
--- a/.github/workflows/Publish.yml
+++ b/.github/workflows/Publish.yml
@@ -16,7 +16,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        IMAGE: [base-image, base-notebook, pangeo-notebook, ml-notebook]
+        IMAGE: [base-image, base-notebook, pangeo-notebook, ml-notebook, pytorch-notebook]
     name: ${{ matrix.IMAGE }}
     runs-on: ubuntu-latest
     steps:
diff --git a/.github/workflows/Test.yml b/.github/workflows/Test.yml
index ce528985..e17d0d69 100644
--- a/.github/workflows/Test.yml
+++ b/.github/workflows/Test.yml
@@ -37,7 +37,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        IMAGE: [base-notebook, pangeo-notebook, ml-notebook]
+        IMAGE: [base-notebook, pangeo-notebook, ml-notebook, pytorch-notebook]
     name: ${{ matrix.IMAGE }}
     runs-on: ubuntu-latest
     steps:
diff --git a/Makefile b/Makefile
index 437edf2f..8bc416fb 100644
--- a/Makefile
+++ b/Makefile
@@ -1,6 +1,6 @@
 # Makefile for convenience, (doesn't look for command outputs)
 .PHONY: all
-all: base-image base-notebook pangeo-notebook ml-notebook
+all: base-image base-notebook pangeo-notebook ml-notebook pytorch-notebook
 TESTDIR=/srv/test
 
 .PHONY: base-image
@@ -31,3 +31,11 @@ ml-notebook : base-image
 	../generate-packages-list.py conda-linux-64.lock > packages.txt; \
 	docker build -t pangeo/ml-notebook:master . ; \
 	docker run -w $(TESTDIR) -v $(PWD):$(TESTDIR) pangeo/ml-notebook:master ./run_tests.sh ml-notebook
+
+.PHONY: pytorch-notebook
+pytorch-notebook : base-image
+	cd pytorch-notebook ; \
+	conda-lock lock --mamba -f environment.yml -f ../pangeo-notebook/environment.yml -p linux-64; \
+	../generate-packages-list.py conda-linux-64.lock > packages.txt; \
+	docker build -t pangeo/pytorch-notebook:master . ; \
+	docker run -w $(TESTDIR) -v $(PWD):$(TESTDIR) pangeo/pytorch-notebook:master ./run_tests.sh pytorch-notebook
diff --git a/README.md b/README.md
index 60eb798b..de31eb78 100644
--- a/README.md
+++ b/README.md
@@ -13,6 +13,7 @@ Image are hosted on DockerHub: https://hub.docker.com/u/pangeo
 | base-image      | Foundational Dockerfile for builds            | ![](https://img.shields.io/docker/image-size/pangeo/base-image?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/base-image?sort=date)
 | [base-notebook](base-notebook/packages.txt) | minimally functional image for pangeo hubs | ![](https://img.shields.io/docker/image-size/pangeo/base-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/base-notebook?sort=date)
 | [pangeo-notebook](pangeo-notebook/packages.txt) | above + core earth science analysis packages | ![](https://img.shields.io/docker/image-size/pangeo/pangeo-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/pangeo-notebook?sort=date)
+| [pytorch-notebook](pytorch-notebook/packages.txt) | above + GPU-enabled pytorch | ![](https://img.shields.io/docker/image-size/pangeo/pytorch-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/pytorch-notebook?sort=date)
 | [ml-notebook](ml-notebook/packages.txt) | above + GPU-enabled tensorflow2 | ![](https://img.shields.io/docker/image-size/pangeo/ml-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/ml-notebook?sort=date)
 
 *Click on the image name in the table above for a current list of installed packages and versions*
@@ -27,7 +28,7 @@ Users who need the special features offered by [Pangeo binder](https://binder.pa
 * https://binder.pangeo.io/v2/gh/pangeo-data/pangeo-docker-images/HEAD?urlpath=lab
 * https://aws-uswest2-binder.pangeo.io/v2/gh/pangeo-data/pangeo-docker-images/HEAD?urlpath=lab
 
-NOTE: the links above resolve to the [`pangeo-notebook` image](https://github.com/pangeo-data/pangeo-docker-images/tree/master/pangeo-notebook) and not `base-notebook` or `ml-notebook` that are also defined in this repository. Currently BinderHubs map to a single image definition per repository.
+NOTE: the links above resolve to the [`pangeo-notebook` image](https://github.com/pangeo-data/pangeo-docker-images/tree/master/pangeo-notebook) and not `base-notebook`, `ml-notebook` or `pytorch-notebook` that are also defined in this repository. Currently BinderHubs map to a single image definition per repository.
 
 #### Use nbgitpuller to automatically load content
 
diff --git a/pangeo-notebook/environment.yml b/pangeo-notebook/environment.yml
index cccfc335..5869e874 100644
--- a/pangeo-notebook/environment.yml
+++ b/pangeo-notebook/environment.yml
@@ -3,6 +3,9 @@ channels:
  - conda-forge
 dependencies:
  - python=3.9*
+ # needed for pytorch to work
+ # https://github.com/NVIDIA/MinkowskiEngine/issues/354#issuecomment-880555195
+ - anaconda::libopenblas
  - pangeo-notebook=2022.04.18
  - pip=20
  - adlfs
diff --git a/pytorch-notebook/Dockerfile b/pytorch-notebook/Dockerfile
new file mode 100644
index 00000000..936d0b7f
--- /dev/null
+++ b/pytorch-notebook/Dockerfile
@@ -0,0 +1,11 @@
+# ONBUILD instructions in base-image/Dockerfile are used to
+# perform certain actions based on the presence of specific
+# files (such as conda-linux-64.lock, start) in this repo.
+# Refer to the base-image/Dockerfile for documentation.
+FROM pangeo/base-image:master
+
+# Required for nvidia drivers to work inside the image on GKE
+# No-ops on other platforms - Azure doesn't need these set.
+# Shouldn't negatively affect anyone, and makes life easier on GKE.
+ENV PATH=${PATH}:/usr/local/nvidia/bin
+ENV LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/nvidia/lib64
diff --git a/pytorch-notebook/apt.txt b/pytorch-notebook/apt.txt
new file mode 100644
index 00000000..82d0355f
--- /dev/null
+++ b/pytorch-notebook/apt.txt
@@ -0,0 +1,2 @@
+git
+vim
diff --git a/pytorch-notebook/environment.yml b/pytorch-notebook/environment.yml
new file mode 100644
index 00000000..cb2ebbf2
--- /dev/null
+++ b/pytorch-notebook/environment.yml
@@ -0,0 +1,8 @@
+# Note: this environment will be merged with the pangeo-notebook/environment.yml
+# by conda-lock. Only put things here that are not already in pangeo-notebook
+name: pangeo
+channels:
+ - conda-forge
+dependencies:
+ - cudatoolkit=11
+ - pytorch-gpu
diff --git a/pytorch-notebook/jupyter_notebook_config.py b/pytorch-notebook/jupyter_notebook_config.py
new file mode 100644
index 00000000..1d5e5598
--- /dev/null
+++ b/pytorch-notebook/jupyter_notebook_config.py
@@ -0,0 +1,5 @@
+import os
+
+# Configure nb_conda_kernels to avoid registering jupyter kernels in our conda
+# environment again.
+c.CondaKernelSpecManager.env_filter = f'.*envs/{os.environ["CONDA_ENV"]}.*'
diff --git a/pytorch-notebook/start b/pytorch-notebook/start
new file mode 100644
index 00000000..f363ab4d
--- /dev/null
+++ b/pytorch-notebook/start
@@ -0,0 +1,12 @@
+#!/bin/bash -l
+
+# ==== ONLY EDIT WITHIN THIS BLOCK =====
+
+export PANGEO_ENV="pytorch-notebook"
+if ! [[ -z "${PANGEO_SCRATCH_PREFIX}" ]] && ! [[ -z "${JUPYTERHUB_USER}" ]]; then
+    export PANGEO_SCRATCH="${PANGEO_SCRATCH_PREFIX}/${JUPYTERHUB_USER}/"
+fi
+
+# ==== ONLY EDIT WITHIN THIS BLOCK =====
+
+exec "$@"
diff --git a/tests/test_pytorch-notebook.py b/tests/test_pytorch-notebook.py
new file mode 100644
index 00000000..939c538f
--- /dev/null
+++ b/tests/test_pytorch-notebook.py
@@ -0,0 +1,26 @@
+import pytest
+import importlib
+import sys
+import os
+
+packages = [
+    # machine learning stuff
+    "pytorch",
+    "skimage",
+    "sklearn",
+    # cupy import fails unless on GPU-enabled node:
+    #'cupy', #libcuda.so.1: cannot open shared object file: No such file or directory
+    # Error w/conda solve of pytorch+tensorflow, so not currently installed
+    # 'torch'
+]
+
+
+@pytest.mark.parametrize("package_name", packages, ids=packages)
+def test_import(package_name):
+    importlib.import_module(package_name)
+
+
+def test_start():
+    print(os.environ)
+    if os.environ.get("PANGEO_ENV") is not None:
+        assert os.environ["PANGEO_ENV"] == "pytorch-notebook"

From 327b6a2d7458a10cb232075fa031a73e678ec169 Mon Sep 17 00:00:00 2001
From: pangeo-bot <pangeo-bot@users.noreply.github.com>
Date: Wed, 27 Apr 2022 19:36:38 +0000
Subject: [PATCH 2/8] [condalock-command] autogenerated conda-linux-64.lock
 files

---
 base-notebook/conda-linux-64.lock   | 26 ++++-----
 base-notebook/packages.txt          | 12 ++---
 ml-notebook/conda-linux-64.lock     | 84 ++++++++++++++---------------
 ml-notebook/packages.txt            | 54 +++++++++----------
 pangeo-notebook/conda-linux-64.lock | 74 ++++++++++++-------------
 pangeo-notebook/packages.txt        | 46 ++++++++--------
 6 files changed, 148 insertions(+), 148 deletions(-)

diff --git a/base-notebook/conda-linux-64.lock b/base-notebook/conda-linux-64.lock
index 9f525cbf..ec275d90 100644
--- a/base-notebook/conda-linux-64.lock
+++ b/base-notebook/conda-linux-64.lock
@@ -5,14 +5,14 @@
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2021.10.8-ha878542_0.tar.bz2#575611b8a84f45960e87722eeb51fa26
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.36.1-hea4e1c9_2.tar.bz2#bd4f2e711b39af170e7ff15163fe87ee
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-11.2.0-h5c6108e_15.tar.bz2#7c2c0cd937b707aa46f3369d693a1f29
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-11.2.0-he4da1e4_15.tar.bz2#4ffda9c4352880439042fbb8a9863e8c
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-11.2.0-h5c6108e_16.tar.bz2#ff034874d96195a5c5be34200689b5b7
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-11.2.0-he4da1e4_16.tar.bz2#8cfd1cd3273ff187be91b868ddf9a636
 https://conda.anaconda.org/conda-forge/linux-64/pandoc-2.18-ha770c72_0.tar.bz2#518b07342786b362238d22f76789ed59
 https://conda.anaconda.org/conda-forge/noarch/tzdata-2022a-h191b570_0.tar.bz2#84be5301069417a2221187d2f435e0f7
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-11.2.0-h69a702a_15.tar.bz2#23b9afaf5975e1db0f59d1251425f5d5
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-11.2.0-h1d223b6_15.tar.bz2#5b7bff215ad9f30325dbe86dd983cb49
-https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-1_gnu.tar.bz2#561e277319a41d4f24f5c05a9ef63c04
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-11.2.0-h1d223b6_15.tar.bz2#8041e476e66fcde71f0aa3d614e0efcf
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-11.2.0-h69a702a_16.tar.bz2#27974aad841c189854df09426b1b9fac
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-11.2.0-h1d223b6_16.tar.bz2#e935fb0c92c6ffb63c736a2012604d72
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-11.2.0-h1d223b6_16.tar.bz2#71feb63a30085cbce51847d5ef1f769d
 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.18.1-h7f98852_0.tar.bz2#f26ef8098fab1f719c91eb760d63381a
 https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.1-h36c2ea0_2.tar.bz2#626e68ae9cc5912d6adb79d318cf962d
@@ -55,7 +55,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.3.0-h542a066_3.tar.bz2
 https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.38.2-h4ff8645_0.tar.bz2#9d4b7a876d5531fdbb682ed526f8b847
 https://conda.anaconda.org/conda-forge/linux-64/freetype-2.10.4-h0708190_1.tar.bz2#4a06f2ac2e5bfae7b6b245171c3f07aa
 https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.12-hddcbb42_0.tar.bz2#797117394a4aa588de6d741b06fad80f
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.82.0-h7bff187_0.tar.bz2#fa26f833ca8796ad44f9561c5402013d
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.83.0-h7bff187_0.tar.bz2#e2d939fa77fe69cd50f751961f17786a
 https://conda.anaconda.org/conda-forge/linux-64/libwebp-1.2.2-h3452ae3_0.tar.bz2#c363665b4aabe56aae4f8981cff5b153
 https://conda.anaconda.org/conda-forge/linux-64/openjpeg-2.4.0-hb52868f_1.tar.bz2#b7ad78ad2e9ee155f59e6428406ee824
 https://conda.anaconda.org/conda-forge/linux-64/python-3.9.12-h9a8a25e_1_cpython.tar.bz2#06dadf5df9d340439c2aa32e15099d31
@@ -78,7 +78,7 @@ https://conda.anaconda.org/conda-forge/noarch/idna-3.3-pyhd8ed1ab_0.tar.bz2#40b5
 https://conda.anaconda.org/conda-forge/noarch/ipython_genutils-0.2.0-py_1.tar.bz2#5071c982548b3a20caf70462f04f5287
 https://conda.anaconda.org/conda-forge/noarch/json5-0.9.5-pyh9f0ad1d_0.tar.bz2#10759827a94e6b14996e81fb002c0bda
 https://conda.anaconda.org/conda-forge/noarch/jupyterlab_widgets-1.1.0-pyhd8ed1ab_0.tar.bz2#e963a4a39cf442dbe5503f66edda083d
-https://conda.anaconda.org/conda-forge/noarch/locket-0.2.0-py_2.tar.bz2#709e8671651c7ec3d1ad07800339ff1d
+https://conda.anaconda.org/conda-forge/noarch/locket-1.0.0-pyhd8ed1ab_0.tar.bz2#91e27ef3d05cc772ce627e51cff111c4
 https://conda.anaconda.org/conda-forge/noarch/nest-asyncio-1.5.5-pyhd8ed1ab_0.tar.bz2#dc36c992aec485c0efff619ed2e63957
 https://conda.anaconda.org/conda-forge/noarch/pamela-1.0.0-py_0.tar.bz2#36f6f18d2f3ae0c93d77a9dbedad08c3
 https://conda.anaconda.org/conda-forge/noarch/pandocfilters-1.5.0-pyhd8ed1ab_0.tar.bz2#457c2c8c08e54905d6954e79cb5b5db9
@@ -127,7 +127,7 @@ https://conda.anaconda.org/conda-forge/noarch/matplotlib-inline-0.1.3-pyhd8ed1ab
 https://conda.anaconda.org/conda-forge/linux-64/mistune-0.8.4-py39h3811e60_1005.tar.bz2#95eb8cbf40bccdcb34888c9e56371570
 https://conda.anaconda.org/conda-forge/linux-64/msgpack-python-1.0.3-py39hf939315_1.tar.bz2#9d47ff7dffb54ed6b10bd4e5087af505
 https://conda.anaconda.org/conda-forge/linux-64/multidict-6.0.2-py39hb9d737c_1.tar.bz2#f13f8563cbabc9e3ed69037257124f5d
-https://conda.anaconda.org/conda-forge/linux-64/numpy-1.22.3-py39h18676bf_2.tar.bz2#53c86074bea729d8d33af4cbebadcff3
+https://conda.anaconda.org/conda-forge/linux-64/numpy-1.22.3-py39hc58783e_2.tar.bz2#e682ad4e85c7fda7dd0f0283d3b2ae8e
 https://conda.anaconda.org/conda-forge/noarch/packaging-21.3-pyhd8ed1ab_0.tar.bz2#71f1ab2de48613876becddd496371c85
 https://conda.anaconda.org/conda-forge/noarch/partd-1.2.0-pyhd8ed1ab_0.tar.bz2#0c32f563d7f22e3a34c95cad8cc95651
 https://conda.anaconda.org/conda-forge/noarch/pexpect-4.8.0-pyh9f0ad1d_2.tar.bz2#5909e7b978141dd80d28dbf9de627827
@@ -162,13 +162,13 @@ https://conda.anaconda.org/conda-forge/noarch/dask-core-2022.4.1-pyhd8ed1ab_0.ta
 https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-4.11.3-hd8ed1ab_1.tar.bz2#bd6b6ae37c03e68061574d5e32fe5bd1
 https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.1-pyhd8ed1ab_0.tar.bz2#40b3f446c61729cdd21ed9d85627df6e
 https://conda.anaconda.org/conda-forge/noarch/jsonschema-4.4.0-pyhd8ed1ab_0.tar.bz2#17ec41acce882e5db4efdcc4c01ca7e0
-https://conda.anaconda.org/conda-forge/noarch/jupyter_client-7.2.2-pyhd8ed1ab_1.tar.bz2#9967e2ad57f060c15da2a7ba1bfb6997
+https://conda.anaconda.org/conda-forge/noarch/jupyter_client-7.3.0-pyhd8ed1ab_0.tar.bz2#3426dc8140fb663110aedfd1a3478db5
 https://conda.anaconda.org/conda-forge/noarch/mako-1.2.0-pyhd8ed1ab_1.tar.bz2#df0535cc0efcc9d418940fc689b1487c
 https://conda.anaconda.org/conda-forge/linux-64/pandas-1.4.2-py39h1832856_1.tar.bz2#264505bcd299b8d564195cfb3e6038f0
 https://conda.anaconda.org/conda-forge/noarch/pip-22.0.4-pyhd8ed1ab_0.tar.bz2#b1239ce8ef2a1eec485c398a683c5bff
-https://conda.anaconda.org/conda-forge/noarch/pygments-2.11.2-pyhd8ed1ab_0.tar.bz2#caef60540e2239e27bf62569a5015e3b
+https://conda.anaconda.org/conda-forge/noarch/pygments-2.12.0-pyhd8ed1ab_0.tar.bz2#cb27e2ded147e5bcc7eafc1c6d343cb3
 https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml-0.17.21-py39hb9d737c_1.tar.bz2#2b94cf785616198b112170b9838262a4
-https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-1.4.35-py39hb9d737c_0.tar.bz2#aba3f9a2c924f9b91dbc45ed727b1985
+https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-1.4.36-py39hb9d737c_0.tar.bz2#e432937ad2a6822f770c1a925a08200c
 https://conda.anaconda.org/conda-forge/noarch/stack_data-0.2.0-pyhd8ed1ab_0.tar.bz2#8c0ce3e6bf18a0c810125aef58a2a6f3
 https://conda.anaconda.org/conda-forge/linux-64/terminado-0.13.3-py39hf3d152e_1.tar.bz2#bebf6da1adb04ed902ff335e61438a6e
 https://conda.anaconda.org/conda-forge/linux-64/yarl-1.7.2-py39hb9d737c_2.tar.bz2#f2f2df8a6238bf5e68c3aaf0e86e08d0
@@ -192,7 +192,7 @@ https://conda.anaconda.org/conda-forge/noarch/kubernetes_asyncio-22.6.4-pyhd8ed1
 https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-6.5.0-pyhd8ed1ab_0.tar.bz2#42f74c4b38a099025167e76a7437edf1
 https://conda.anaconda.org/conda-forge/noarch/requests-2.27.1-pyhd8ed1ab_0.tar.bz2#7c1c427246b057b8fa97200ecdb2ed62
 https://conda.anaconda.org/conda-forge/noarch/dask-2022.4.1-pyhd8ed1ab_0.tar.bz2#c7b70d267db42d97e1510d5906b6692c
-https://conda.anaconda.org/conda-forge/noarch/google-auth-2.6.5-pyh6c4a22f_0.tar.bz2#9744ee1831eb2f6cbe9d741115170fbd
+https://conda.anaconda.org/conda-forge/noarch/google-auth-2.6.6-pyh6c4a22f_0.tar.bz2#ad440163381987054135e5f397bcb95d
 https://conda.anaconda.org/conda-forge/linux-64/ipykernel-6.13.0-py39hef51801_0.tar.bz2#9fd2a497e68e4c715d9fdf3f36b44072
 https://conda.anaconda.org/conda-forge/noarch/jupyter_server-1.16.0-pyhd8ed1ab_1.tar.bz2#3b64b67485061d8296f55b1f463c324e
 https://conda.anaconda.org/conda-forge/noarch/jupyterhub-base-2.2.2-pyhd8ed1ab_1.tar.bz2#9f35d566b71bacc69429c8bad779ee50
diff --git a/base-notebook/packages.txt b/base-notebook/packages.txt
index d5b8c627..b6a57192 100644
--- a/base-notebook/packages.txt
+++ b/base-notebook/packages.txt
@@ -49,7 +49,7 @@ freetype==2.10.4
 frozenlist==1.3.0
 fsspec==2022.3.0
 giflib==5.2.1
-google-auth==2.6.5
+google-auth==2.6.6
 greenlet==1.1.2
 heapdict==1.0.1
 idna==3.3
@@ -67,7 +67,7 @@ jpeg==9e
 json5==0.9.5
 jsonschema==4.4.0
 jupyter-server-proxy==3.2.1
-jupyter_client==7.2.2
+jupyter_client==7.3.0
 jupyter_core==4.9.2
 jupyter_server==1.16.0
 jupyter_telemetry==0.1.0
@@ -85,7 +85,7 @@ ld_impl_linux-64==2.36.1
 lerc==3.0
 libblas==3.9.0
 libcblas==3.9.0
-libcurl==7.82.0
+libcurl==7.83.0
 libdeflate==1.10
 libedit==3.1.20191231
 libev==4.33
@@ -108,7 +108,7 @@ libwebp==1.2.2
 libwebp-base==1.2.2
 libxcb==1.13
 libzlib==1.2.11
-locket==0.2.0
+locket==1.0.0
 lz4==4.0.0
 lz4-c==1.9.3
 mako==1.2.0
@@ -155,7 +155,7 @@ pyasn1==0.4.8
 pyasn1-modules==0.2.7
 pycparser==2.21
 pycurl==7.45.1
-pygments==2.11.2
+pygments==2.12.0
 pyjwt==2.3.0
 pyopenssl==22.0.0
 pyparsing==3.0.8
@@ -184,7 +184,7 @@ six==1.16.0
 sniffio==1.2.0
 sortedcontainers==2.4.0
 soupsieve==2.3.1
-sqlalchemy==1.4.35
+sqlalchemy==1.4.36
 sqlite==3.38.2
 stack_data==0.2.0
 tblib==1.7.0
diff --git a/ml-notebook/conda-linux-64.lock b/ml-notebook/conda-linux-64.lock
index 57c9af62..44b3f64e 100644
--- a/ml-notebook/conda-linux-64.lock
+++ b/ml-notebook/conda-linux-64.lock
@@ -1,8 +1,8 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: d59fa2ed3b4ee8421ca468e4c9eca6c218b6c38cdc2b450bfd85aa5299bb5dab
+# input_hash: 9caa06239423e2279b21c305fccbaf70face23a7ed1d948d525cd38528289a40
 @EXPLICIT
-https://conda.anaconda.org/conda-forge/linux-64/gh-2.8.0-ha8f183a_0.tar.bz2#7817ecbfff4bf3bcfb357534c5a00b5e
+https://conda.anaconda.org/conda-forge/linux-64/gh-2.9.0-ha8f183a_0.tar.bz2#243fca5fe2a44f72f68da93b44089c9a
 https://conda.anaconda.org/conda-forge/linux-64/git-lfs-3.1.4-ha770c72_0.tar.bz2#1bd1d0f0bae6a3ed371d7c90b0d79510
 https://conda.anaconda.org/conda-forge/noarch/nomkl-1.0-h5ca1d4c_0.tar.bz2#9a66894dfd07c4510beb6b3f9672ccc0
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
@@ -13,27 +13,26 @@ https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77
 https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-hab24e00_0.tar.bz2#19410c3df09dfb12d1206132a1d357c5
 https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-2.6.32-he073ed8_15.tar.bz2#5dd5127afd710f91f6a75821bac0a4f0
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.36.1-hea4e1c9_2.tar.bz2#bd4f2e711b39af170e7ff15163fe87ee
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-11.2.0-h0952999_15.tar.bz2#6628d232ec912aa46f0957f5fba05728
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-11.2.0-h5c6108e_15.tar.bz2#7c2c0cd937b707aa46f3369d693a1f29
-https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-11.2.0-he4da1e4_15.tar.bz2#4ffda9c4352880439042fbb8a9863e8c
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-11.2.0-h0952999_16.tar.bz2#c17d42a971030d4c072ef7f7ba3f8d21
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-11.2.0-h5c6108e_16.tar.bz2#ff034874d96195a5c5be34200689b5b7
+https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-11.2.0-he4da1e4_16.tar.bz2#8cfd1cd3273ff187be91b868ddf9a636
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-https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-11.2.0-h69a702a_15.tar.bz2#23b9afaf5975e1db0f59d1251425f5d5
-https://conda.anaconda.org/conda-forge/linux-64/libgomp-11.2.0-h1d223b6_15.tar.bz2#5b7bff215ad9f30325dbe86dd983cb49
+https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-11.2.0-h69a702a_16.tar.bz2#27974aad841c189854df09426b1b9fac
+https://conda.anaconda.org/conda-forge/linux-64/libgomp-11.2.0-h1d223b6_16.tar.bz2#e935fb0c92c6ffb63c736a2012604d72
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-https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-1_gnu.tar.bz2#561e277319a41d4f24f5c05a9ef63c04
+https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d
 https://conda.anaconda.org/conda-forge/linux-64/binutils_impl_linux-64-2.36.1-h193b22a_2.tar.bz2#32aae4265554a47ea77f7c09f86aeb3b
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-https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-11.2.0-h1d223b6_15.tar.bz2#8041e476e66fcde71f0aa3d614e0efcf
+https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-11.2.0-h1d223b6_16.tar.bz2#71feb63a30085cbce51847d5ef1f769d
 https://conda.anaconda.org/conda-forge/linux-64/abseil-cpp-20210324.2-h9c3ff4c_0.tar.bz2#baa652d7d0da41d757a31d00b4ae2c38
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 https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.6.2-h7f98852_0.tar.bz2#ce69a062b3080485b760378841240634
-https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.0-h9c3ff4c_0.tar.bz2#5e815e5126c6f7e34ab4496fa1b48dca
 https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54
 https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.18.1-h7f98852_0.tar.bz2#f26ef8098fab1f719c91eb760d63381a
 https://conda.anaconda.org/conda-forge/linux-64/charls-2.3.4-h9c3ff4c_0.tar.bz2#c3f85a96a52befc5e41cab1145c8d3c2
@@ -67,7 +66,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libogg-1.3.4-h7f98852_1.tar.bz2#
 https://conda.anaconda.org/conda-forge/linux-64/libopenblas-0.3.20-pthreads_h78a6416_0.tar.bz2#9b6d0781953c9e353faee494336cc229
 https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2#15345e56d527b330e1cacbdf58676e8f
 https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.16-h516909a_0.tar.bz2#b38752a755b9c64f07651fcc0084f878
-https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-11.2.0-he4da1e4_15.tar.bz2#82c3ec1ead559cb18ad1472d396023d2
+https://conda.anaconda.org/conda-forge/linux-64/libsanitizer-11.2.0-he4da1e4_16.tar.bz2#70c0020fb2094fd51fe12462e8cde942
 https://conda.anaconda.org/conda-forge/linux-64/libsodium-1.0.18-h36c2ea0_1.tar.bz2#c3788462a6fbddafdb413a9f9053e58d
 https://conda.anaconda.org/conda-forge/linux-64/libspatialindex-1.9.3-h9c3ff4c_4.tar.bz2#d87fbe9c0ff589e802ff13872980bfd9
 https://conda.anaconda.org/conda-forge/linux-64/libtool-2.4.6-h9c3ff4c_1008.tar.bz2#16e143a1ed4b4fd169536373957f6fee
@@ -105,8 +104,9 @@ https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2#4c
 https://conda.anaconda.org/conda-forge/linux-64/zfp-0.5.5-h9c3ff4c_8.tar.bz2#f12900b1e1e0527c0e9a4e922a5de2bf
 https://conda.anaconda.org/conda-forge/linux-64/aws-c-cal-0.5.11-h95a6274_0.tar.bz2#d4e7b241fb22dd3d7be1171f813d5da3
 https://conda.anaconda.org/conda-forge/linux-64/aws-checksums-0.1.11-ha31a3da_7.tar.bz2#2fdb96aaab883abc0766ff76c0a34483
+https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.1-hd32f23e_0.tar.bz2#d33588eb8181267e8d49c017e0f143b6
 https://conda.anaconda.org/conda-forge/linux-64/cudnn-7.6.5.32-h01f27c4_1.tar.bz2#298362896ec792e4a73d59dea331c999
-https://conda.anaconda.org/conda-forge/linux-64/gcc_impl_linux-64-11.2.0-h82a94d6_15.tar.bz2#2f293e920b5206424603442d389638c2
+https://conda.anaconda.org/conda-forge/linux-64/gcc_impl_linux-64-11.2.0-h82a94d6_16.tar.bz2#76103d932fc706148b619b815580f244
 https://conda.anaconda.org/conda-forge/linux-64/gettext-0.19.8.1-h73d1719_1008.tar.bz2#af49250eca8e139378f8ff0ae9e57251
 https://conda.anaconda.org/conda-forge/linux-64/glog-0.5.0-h48cff8f_0.tar.bz2#a574d6262c2f18ed60a686e1014a6700
 https://conda.anaconda.org/conda-forge/linux-64/gnutls-3.6.13-h85f3911_1.tar.bz2#7d1b6fff16c1431d96cb4934938799fd
@@ -121,7 +121,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libllvm13-13.0.1-hf817b99_2.tar.
 https://conda.anaconda.org/conda-forge/linux-64/librttopo-1.1.0-hf69c175_9.tar.bz2#24be5de0faf30ce36576f3dc73bc6cbc
 https://conda.anaconda.org/conda-forge/linux-64/libvorbis-1.3.7-h9c3ff4c_0.tar.bz2#309dec04b70a3cc0f1e84a4013683bc0
 https://conda.anaconda.org/conda-forge/linux-64/libxcb-1.13-h7f98852_1004.tar.bz2#b3653fdc58d03face9724f602218a904
-https://conda.anaconda.org/conda-forge/linux-64/mysql-common-8.0.28-haf5c9bc_4.tar.bz2#8c336a182a644e58f5ddd5a08a670489
+https://conda.anaconda.org/conda-forge/linux-64/mysql-common-8.0.29-haf5c9bc_0.tar.bz2#69c2d220ca1b41a881928a91a6cbbd93
 https://conda.anaconda.org/conda-forge/linux-64/nccl-2.12.10.1-h1a5f58c_0.tar.bz2#3f0ab64ed526cc31615aab3a7e74fb83
 https://conda.anaconda.org/conda-forge/linux-64/readline-8.1-h46c0cb4_0.tar.bz2#5788de3c8d7a7d64ac56c784c4ef48e6
 https://conda.anaconda.org/conda-forge/linux-64/s2n-1.0.10-h9b69904_0.tar.bz2#9708c3ac26c20b4c4549cbe8fef937eb
@@ -152,7 +152,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libthrift-0.15.0-he6d91bd_1.tar.
 https://conda.anaconda.org/conda-forge/linux-64/libtiff-4.3.0-h542a066_3.tar.bz2#1a0efb4dfd880b0376da8e1ba39fa838
 https://conda.anaconda.org/conda-forge/linux-64/libxml2-2.9.12-h885dcf4_1.tar.bz2#d1355eaa48f465782f228275a0a69771
 https://conda.anaconda.org/conda-forge/linux-64/libzip-1.8.0-h4de3113_1.tar.bz2#175a746a43d42c053b91aa765fbc197d
-https://conda.anaconda.org/conda-forge/linux-64/mysql-libs-8.0.28-h28c427c_4.tar.bz2#f3d459b87692be9d6f4aaa5fd69a6b82
+https://conda.anaconda.org/conda-forge/linux-64/mysql-libs-8.0.29-h28c427c_0.tar.bz2#3314d5f8d6c831514363625cb28c8ff1
 https://conda.anaconda.org/conda-forge/linux-64/openh264-2.1.1-h780b84a_0.tar.bz2#034a6f90f1bbc7ba11d04b84ec9d74c8
 https://conda.anaconda.org/conda-forge/linux-64/sqlite-3.38.2-h4ff8645_0.tar.bz2#9d4b7a876d5531fdbb682ed526f8b847
 https://conda.anaconda.org/conda-forge/linux-64/xorg-libx11-1.7.2-h7f98852_0.tar.bz2#12a61e640b8894504326aadafccbb790
@@ -166,7 +166,7 @@ https://conda.anaconda.org/conda-forge/linux-64/grpc-cpp-1.42.0-ha1441d3_1.tar.b
 https://conda.anaconda.org/conda-forge/linux-64/gstreamer-1.20.1-hd4edc92_1.tar.bz2#ebebb56f78dd7518dcc94d6c26aa2249
 https://conda.anaconda.org/conda-forge/linux-64/gts-0.7.6-h64030ff_2.tar.bz2#112eb9b5b93f0c02e59aea4fd1967363
 https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.12-hddcbb42_0.tar.bz2#797117394a4aa588de6d741b06fad80f
-https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.82.0-h7bff187_0.tar.bz2#fa26f833ca8796ad44f9561c5402013d
+https://conda.anaconda.org/conda-forge/linux-64/libcurl-7.83.0-h7bff187_0.tar.bz2#e2d939fa77fe69cd50f751961f17786a
 https://conda.anaconda.org/conda-forge/linux-64/libkml-1.3.0-h238a007_1014.tar.bz2#abd8e196ad04781818acef26cc451d66
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 https://conda.anaconda.org/conda-forge/noarch/xarray-2022.3.0-pyhd8ed1ab_0.tar.bz2#46e2d57d8ddb0ddef0f3abd516d7e99a
@@ -503,7 +503,7 @@ https://conda.anaconda.org/conda-forge/noarch/nbclient-0.6.0-pyhd8ed1ab_0.tar.bz
 https://conda.anaconda.org/conda-forge/noarch/nbstripout-0.5.0-pyhd8ed1ab_0.tar.bz2#f2db95d8e4f7b6e9f6233be79933a693
 https://conda.anaconda.org/conda-forge/noarch/nc-time-axis-1.4.1-pyhd8ed1ab_0.tar.bz2#281b58948bf60a2582de9e548bcc5369
 https://conda.anaconda.org/conda-forge/noarch/networkx-2.8-pyhd8ed1ab_0.tar.bz2#f23297b9fa680ba13f9fdfba58bb3064
-https://conda.anaconda.org/conda-forge/noarch/odc-geo-0.1.1-pyhd8ed1ab_0.tar.bz2#d2c55dd6c0fe86dd6f03d7b186641284
+https://conda.anaconda.org/conda-forge/noarch/odc-geo-0.1.2-pyhd8ed1ab_0.tar.bz2#cabd16e0b0cec951621c2e40f189d496
 https://conda.anaconda.org/conda-forge/noarch/prompt-toolkit-3.0.29-pyha770c72_0.tar.bz2#9e720b57b22ef3032b4fb081697819dd
 https://conda.anaconda.org/conda-forge/linux-64/pyarrow-6.0.1-py39hff6fa39_8_cpu.tar.bz2#c9cf14cdf11464dad4f18d50b8ef8b67
 https://conda.anaconda.org/conda-forge/linux-64/pyqt-5.12.3-py39hf3d152e_8.tar.bz2#466425e3ee3b190e06b8a5a7098421aa
@@ -524,7 +524,7 @@ https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.5.1-py39hf3d152e_0.
 https://conda.anaconda.org/conda-forge/noarch/morecantile-3.1.2-pyhd8ed1ab_0.tar.bz2#57b3cb87126c61715dbee44e88045d3c
 https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-6.5.0-pyhd8ed1ab_0.tar.bz2#42f74c4b38a099025167e76a7437edf1
 https://conda.anaconda.org/conda-forge/noarch/requests-2.27.1-pyhd8ed1ab_0.tar.bz2#7c1c427246b057b8fa97200ecdb2ed62
-https://conda.anaconda.org/conda-forge/noarch/rioxarray-0.10.3-pyhd8ed1ab_0.tar.bz2#ca6c6559f5fba4a689af8c165dc38631
+https://conda.anaconda.org/conda-forge/noarch/rioxarray-0.11.1-pyhd8ed1ab_0.tar.bz2#f38cc4e99cc7bea91f1d926dcf785500
 https://conda.anaconda.org/conda-forge/linux-64/scikit-image-0.19.2-py39hde0f152_0.tar.bz2#200ceba1a31bf22629232285a550506f
 https://conda.anaconda.org/conda-forge/noarch/seaborn-0.11.2-hd8ed1ab_0.tar.bz2#e56b6a19f4b717eca7c68ad78196b075
 https://conda.anaconda.org/conda-forge/noarch/stackstac-0.4.1-pyhd8ed1ab_0.tar.bz2#325db66b405b8f63a3ad6f9c8382603b
@@ -536,7 +536,7 @@ https://conda.anaconda.org/conda-forge/noarch/dask-2022.4.1-pyhd8ed1ab_0.tar.bz2
 https://conda.anaconda.org/conda-forge/linux-64/docker-py-5.0.3-py39hf3d152e_2.tar.bz2#adbd239e5bf8b3f85fbc31fc98151e3c
 https://conda.anaconda.org/conda-forge/noarch/erddapy-1.2.1-pyhd8ed1ab_0.tar.bz2#05c9b7407d77e382ff114b17b0eb8c21
 https://conda.anaconda.org/conda-forge/noarch/folium-0.12.1.post1-pyhd8ed1ab_1.tar.bz2#44912901b45260e4338447b9d46f7058
-https://conda.anaconda.org/conda-forge/noarch/google-auth-1.35.0-pyh6c4a22f_0.tar.bz2#e9e51ec25b36547a4192a1953df66a8c
+https://conda.anaconda.org/conda-forge/noarch/google-auth-2.6.6-pyh6c4a22f_0.tar.bz2#ad440163381987054135e5f397bcb95d
 https://conda.anaconda.org/conda-forge/linux-64/ipykernel-6.13.0-py39hef51801_0.tar.bz2#9fd2a497e68e4c715d9fdf3f36b44072
 https://conda.anaconda.org/conda-forge/noarch/jupyter_server-1.16.0-pyhd8ed1ab_1.tar.bz2#3b64b67485061d8296f55b1f463c324e
 https://conda.anaconda.org/conda-forge/noarch/jupyterhub-base-2.2.2-pyhd8ed1ab_1.tar.bz2#9f35d566b71bacc69429c8bad779ee50
@@ -564,8 +564,8 @@ https://conda.anaconda.org/conda-forge/linux-64/dask-gateway-0.9.0-py39hf3d152e_
 https://conda.anaconda.org/conda-forge/noarch/dask-glm-0.2.0-py_1.tar.bz2#7c9c5295a0499bf56bbf084578618af5
 https://conda.anaconda.org/conda-forge/noarch/gcm_filters-0.2.3-pyhd8ed1ab_0.tar.bz2#0f00cd075f032e01c8b81f348f59ac9e
 https://conda.anaconda.org/conda-forge/noarch/geopandas-0.10.2-pyhd8ed1ab_1.tar.bz2#0682614964c1319304cfa554cbce90f0
-https://conda.anaconda.org/conda-forge/noarch/google-api-core-1.31.5-pyhd8ed1ab_0.tar.bz2#af0e65ba5f2c0a20e1f93afa747b24d4
-https://conda.anaconda.org/conda-forge/noarch/google-auth-oauthlib-0.4.6-pyhd8ed1ab_0.tar.bz2#430db61bdfa0b37903ef73d84bcea2c9
+https://conda.anaconda.org/conda-forge/noarch/google-api-core-2.5.0-pyhd8ed1ab_0.tar.bz2#70c3b200b64a5f1cc39c94647dfb0c0b
+https://conda.anaconda.org/conda-forge/noarch/google-auth-oauthlib-0.4.1-py_2.tar.bz2#116611db5925f952312e4c1e799936e2
 https://conda.anaconda.org/conda-forge/noarch/intake-0.6.5-pyhd8ed1ab_0.tar.bz2#9b4be120fd2545abd086bfefda0fa0f6
 https://conda.anaconda.org/conda-forge/noarch/jupyter-resource-usage-0.6.1-pyhd8ed1ab_0.tar.bz2#a35cb988cd5b9b9b2d1c6179a8a86974
 https://conda.anaconda.org/conda-forge/noarch/jupyter-server-proxy-3.2.1-pyhd8ed1ab_0.tar.bz2#8fdfe5edf206bbfef250c830b5a72aff
@@ -586,7 +586,7 @@ https://conda.anaconda.org/conda-forge/noarch/s3fs-2022.3.0-pyhd8ed1ab_0.tar.bz2
 https://conda.anaconda.org/conda-forge/noarch/trollimage-1.18.3-pyhd8ed1ab_0.tar.bz2#26ee46ebf9671516365a30ba3fd8ed9d
 https://conda.anaconda.org/conda-forge/noarch/xarrayutils-1.1.1-pyhd8ed1ab_0.tar.bz2#056a718565253012b9dbd25bed16abc4
 https://conda.anaconda.org/conda-forge/linux-64/xcape-0.1.4-py39h34f0aaa_1.tar.bz2#32bbef489f249492ec0208e0114bfe5a
-https://conda.anaconda.org/conda-forge/noarch/xgcm-0.7.0-pyhd8ed1ab_0.tar.bz2#3d4a7b71346d679d894679fecae11405
+https://conda.anaconda.org/conda-forge/noarch/xgcm-0.7.0-pyhd8ed1ab_1.tar.bz2#ca4db576ab62600b13d046c73841fec2
 https://conda.anaconda.org/conda-forge/noarch/xhistogram-0.3.1-pyhd8ed1ab_0.tar.bz2#a5637e98b47a7040b2b8b1d0b8b873de
 https://conda.anaconda.org/conda-forge/noarch/xmitgcm-0.5.2-pyhd8ed1ab_0.tar.bz2#fa9bab98df6ee06367c19eac79f17603
 https://conda.anaconda.org/conda-forge/noarch/xpublish-0.1.0-py_0.tar.bz2#43008e1afae8deef799b9ff6ed23a3f3
@@ -595,10 +595,10 @@ https://conda.anaconda.org/conda-forge/noarch/azure-identity-1.9.0-pyhd8ed1ab_0.
 https://conda.anaconda.org/conda-forge/noarch/azure-storage-blob-12.11.0-pyhd8ed1ab_0.tar.bz2#c44ed04715aa05f1fbd145de7b77889d
 https://conda.anaconda.org/conda-forge/noarch/dask-kubernetes-2022.1.0-pyhd8ed1ab_0.tar.bz2#3d5b8c0dc8eccd8b2344baff8eafaf47
 https://conda.anaconda.org/conda-forge/noarch/dask-ml-2022.1.22-pyhd8ed1ab_0.tar.bz2#3f8eb64b1b6559e99007aebaf4b322f4
-https://conda.anaconda.org/conda-forge/noarch/datashader-0.13.0-pyh6c4a22f_0.tar.bz2#bcc353a756d4ad98b97fcc5aa1f9ce4c
+https://conda.anaconda.org/conda-forge/noarch/datashader-0.14.0-pyh6c4a22f_0.tar.bz2#2c53599fe07002699100d1bcebad2f30
 https://conda.anaconda.org/conda-forge/noarch/earthdata-0.2.2-pyhd8ed1ab_0.tar.bz2#d9c8dc3b164c2cbcf6a80cbbfa0f5688
 https://conda.anaconda.org/conda-forge/noarch/geocube-0.2.0-pyhd8ed1ab_0.tar.bz2#5a6c6d2db414292f09e99a3e8a5d7fd4
-https://conda.anaconda.org/conda-forge/noarch/google-cloud-core-1.7.2-pyh6c4a22f_0.tar.bz2#97a1d5a5ad03a43f3441b532184dfdc5
+https://conda.anaconda.org/conda-forge/noarch/google-cloud-core-2.2.2-pyh6c4a22f_0.tar.bz2#5e07884f8de0b9dcd367f791e6e98b86
 https://conda.anaconda.org/conda-forge/noarch/holoviews-1.14.8-pyhd8ed1ab_0.tar.bz2#29a27d716f026eb701c5e90795fc140a
 https://conda.anaconda.org/conda-forge/noarch/intake-esm-2021.8.17-pyhd8ed1ab_0.tar.bz2#fee875d1653a0dae25c0e37006739935
 https://conda.anaconda.org/conda-forge/noarch/intake-geopandas-0.4.0-pyhd8ed1ab_0.tar.bz2#5d6429a927d1ef3c0d26d81f5d7b31f0
@@ -606,7 +606,7 @@ https://conda.anaconda.org/conda-forge/noarch/intake-xarray-0.6.0-pyhd8ed1ab_0.t
 https://conda.anaconda.org/conda-forge/noarch/jupyter-panel-proxy-0.1.0-py_0.tar.bz2#80c21feab6100e287707c371c752adea
 https://conda.anaconda.org/conda-forge/noarch/notebook-6.4.11-pyha770c72_0.tar.bz2#da25720a88aa3cbb3e16df740783da74
 https://conda.anaconda.org/conda-forge/noarch/satpy-0.36.0-pyhd8ed1ab_0.tar.bz2#33219d79dce152dc6db8501c7c8bc83c
-https://conda.anaconda.org/conda-forge/noarch/tensorboard-2.6.0-pyhd8ed1ab_1.tar.bz2#5ea59c2bbd714e8930c23b50857ef864
+https://conda.anaconda.org/anaconda/noarch/tensorboard-2.6.0-py_1.tar.bz2#b7b765b24e416133eb9c1f7600ce5983
 https://conda.anaconda.org/conda-forge/noarch/xskillscore-0.0.24-pyhd8ed1ab_0.tar.bz2#facc58b60c63642243013e12236e3ea7
 https://conda.anaconda.org/conda-forge/noarch/adlfs-2022.4.0-pyhd8ed1ab_0.tar.bz2#62bdd2bb3fa8091d4b8d7023d89d47ae
 https://conda.anaconda.org/conda-forge/noarch/geoviews-core-1.9.5-pyha770c72_0.tar.bz2#8bd65a48d838db0a95c3ca14728c3fb5
diff --git a/ml-notebook/packages.txt b/ml-notebook/packages.txt
index c4eb77de..059bdbab 100644
--- a/ml-notebook/packages.txt
+++ b/ml-notebook/packages.txt
@@ -51,7 +51,7 @@ binutils_impl_linux-64==2.36.1
 binutils_linux-64==2.36
 bleach==5.0.0
 blinker==1.4
-blosc==1.21.0
+blosc==1.21.1
 bokeh==2.4.2
 boost-cpp==1.74.0
 boto3==1.21.21
@@ -69,7 +69,7 @@ c-blosc2==2.0.4
 ca-certificates==2021.10.8
 cached-property==1.5.2
 cached_property==1.5.2
-cachetools==4.2.4
+cachetools==5.0.0
 cachey==0.2.1
 cairo==1.16.0
 cartopy==0.20.2
@@ -96,7 +96,7 @@ croniter==0.3.36
 cryptography==36.0.2
 cudatoolkit==10.2.89
 cudnn==7.6.5.32
-curl==7.82.0
+curl==7.83.0
 cycler==0.11.0
 cytoolz==0.11.2
 dask==2022.4.1
@@ -106,7 +106,7 @@ dask-glm==0.2.0
 dask-kubernetes==2022.1.0
 dask-labextension==5.2.0
 dask-ml==2022.1.22
-datashader==0.13.0
+datashader==0.14.0
 datashape==0.5.4
 dbus==1.13.6
 debugpy==1.6.0
@@ -145,7 +145,7 @@ font-ttf-ubuntu==0.83
 fontconfig==2.14.0
 fonts-conda-ecosystem==1
 fonts-conda-forge==1
-fonttools==4.32.0
+fonttools==4.33.3
 freeglut==3.2.2
 freetype==2.10.4
 freexl==1.0.6
@@ -171,16 +171,16 @@ geotiff==1.7.1
 geoviews-core==1.9.5
 gettext==0.19.8.1
 gflags==2.2.2
-gh==2.8.0
+gh==2.9.0
 giflib==5.2.1
 git-lfs==3.1.4
 glog==0.5.0
 gmp==6.2.1
 gnutls==3.6.13
-google-api-core==1.31.5
-google-auth==1.35.0
-google-auth-oauthlib==0.4.6
-google-cloud-core==1.7.2
+google-api-core==2.5.0
+google-auth==2.6.6
+google-auth-oauthlib==0.4.1
+google-cloud-core==2.2.2
 google-cloud-storage==2.1.0
 google-crc32c==1.1.2
 google-pasta==0.2.0
@@ -208,7 +208,7 @@ hvplot==0.7.3
 icu==69.1
 idna==3.3
 imagecodecs==2022.2.22
-imageio==2.17.0
+imageio==2.18.0
 importlib-metadata==4.11.3
 importlib_metadata==4.11.3
 importlib_resources==5.7.1
@@ -275,7 +275,7 @@ libbrotlienc==1.0.9
 libcblas==3.9.0
 libclang==13.0.1
 libcrc32c==1.1.2
-libcurl==7.82.0
+libcurl==7.83.0
 libdap4==3.20.6
 libdeflate==1.10
 libdrm==2.4.109
@@ -333,11 +333,11 @@ libzip==1.8.0
 libzlib==1.2.11
 libzopfli==1.0.3
 llvmlite==0.36.0
-locket==0.2.0
+locket==1.0.0
 lxml==4.8.0
 lz4==4.0.0
 lz4-c==1.9.3
-mailchecker==4.1.15
+mailchecker==4.1.16
 mako==1.2.0
 mapclassify==2.4.3
 markdown==3.3.6
@@ -363,8 +363,8 @@ multipledispatch==0.6.0
 munch==2.5.0
 munkres==1.1.4
 mypy_extensions==0.4.3
-mysql-common==8.0.28
-mysql-libs==8.0.28
+mysql-common==8.0.29
+mysql-libs==8.0.29
 natsort==8.1.0
 nb_conda_kernels==2.3.1
 nbclassic==0.3.7
@@ -393,7 +393,7 @@ numba==0.53.1
 numcodecs==0.9.1
 numpy==1.22.3
 oauthlib==3.2.0
-odc-geo==0.1.1
+odc-geo==0.1.2
 openh264==2.1.1
 openjpeg==2.4.0
 openssl==1.1.1n
@@ -417,10 +417,10 @@ patsy==0.5.2
 pcre==8.45
 pendulum==2.1.2
 pexpect==4.8.0
-phonenumbers==8.12.46
+phonenumbers==8.12.47
 pickleshare==0.7.5
 pillow==9.1.0
-pint==0.19.1
+pint==0.19.2
 pip==20.3.4
 pixman==0.40.0
 pluggy==1.0.0
@@ -454,14 +454,14 @@ pydantic==1.9.0
 pydap==3.3.0
 pyerfa==2.0.0.1
 pygeos==0.12.0
-pygments==2.11.2
+pygments==2.12.0
 pyjwt==2.3.0
 pykdtree==1.3.4
 pymbolic==2021.1
 pyopenssl==22.0.0
 pyorbital==1.7.1
 pyparsing==3.0.8
-pyproj==3.3.0
+pyproj==3.3.1
 pyqt==5.12.3
 pyqt-impl==5.12.3
 pyqt5-sip==4.19.18
@@ -474,7 +474,7 @@ pysocks==1.7.1
 pyspectral==0.11.0
 pystac==1.2.0
 pystac-client==0.3.2
-pytest==7.1.1
+pytest==7.1.2
 python==3.9.12
 python-benedict==0.24.3
 python-blosc==1.10.2
@@ -494,7 +494,7 @@ python-kubernetes==23.3.0
 python-slugify==6.1.1
 python-utils==3.1.0
 python_abi==3.9
-pytools==2022.1.4
+pytools==2022.1.5
 pytz==2022.1
 pytzdata==2020.1
 pyu2f==0.1.5
@@ -510,7 +510,7 @@ rechunker==0.4.2
 requests==2.27.1
 requests-oauthlib==1.3.1
 rio-cogeo==3.2.0
-rioxarray==0.10.3
+rioxarray==0.11.1
 rsa==4.7.2
 rtree==1.0.0
 ruamel.yaml==0.17.21
@@ -536,7 +536,7 @@ snuggs==1.4.7
 sortedcontainers==2.4.0
 soupsieve==2.3.1
 sparse==0.13.0
-sqlalchemy==1.4.35
+sqlalchemy==1.4.36
 sqlite==3.38.2
 stack_data==0.2.0
 stackstac==0.4.1
@@ -556,9 +556,9 @@ termcolor==1.1.0
 terminado==0.13.3
 text-unidecode==1.3
 threadpoolctl==3.1.0
-tifffile==2022.4.8
+tifffile==2022.4.26
 tiledb==2.8.1
-tiledb-py==0.14.0
+tiledb-py==0.14.1
 timezonefinder==5.2.0
 tinycss2==1.1.1
 tk==8.6.12
diff --git a/pangeo-notebook/conda-linux-64.lock b/pangeo-notebook/conda-linux-64.lock
index c9376dd0..3b1916a5 100644
--- a/pangeo-notebook/conda-linux-64.lock
+++ b/pangeo-notebook/conda-linux-64.lock
@@ -1,8 +1,8 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 81f695aacb63b6f896cf794fcb5922a185ddfd9dc25e2ef742ba8d94b30ecc00
+# input_hash: 79e96e77268fec781f2e22c6fc4c273d823c381342624846e237c7c4c8749fac
 @EXPLICIT
-https://conda.anaconda.org/conda-forge/linux-64/gh-2.8.0-ha8f183a_0.tar.bz2#7817ecbfff4bf3bcfb357534c5a00b5e
+https://conda.anaconda.org/conda-forge/linux-64/gh-2.9.0-ha8f183a_0.tar.bz2#243fca5fe2a44f72f68da93b44089c9a
 https://conda.anaconda.org/conda-forge/linux-64/git-lfs-3.1.4-ha770c72_0.tar.bz2#1bd1d0f0bae6a3ed371d7c90b0d79510
 https://conda.anaconda.org/conda-forge/noarch/nomkl-1.0-h5ca1d4c_0.tar.bz2#9a66894dfd07c4510beb6b3f9672ccc0
 https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81
@@ -13,27 +13,26 @@ https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77
 https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-hab24e00_0.tar.bz2#19410c3df09dfb12d1206132a1d357c5
 https://conda.anaconda.org/conda-forge/noarch/kernel-headers_linux-64-2.6.32-he073ed8_15.tar.bz2#5dd5127afd710f91f6a75821bac0a4f0
 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.36.1-hea4e1c9_2.tar.bz2#bd4f2e711b39af170e7ff15163fe87ee
-https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-11.2.0-h0952999_15.tar.bz2#6628d232ec912aa46f0957f5fba05728
-https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-11.2.0-h5c6108e_15.tar.bz2#7c2c0cd937b707aa46f3369d693a1f29
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+https://conda.anaconda.org/conda-forge/linux-64/libgcc-devel_linux-64-11.2.0-h0952999_16.tar.bz2#c17d42a971030d4c072ef7f7ba3f8d21
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+https://conda.anaconda.org/conda-forge/noarch/pytools-2022.1.5-pyh8a188c0_0.tar.bz2#2b962ef55fd2552a6d473ed0473303dc
 https://conda.anaconda.org/conda-forge/noarch/pyu2f-0.1.5-pyhd8ed1ab_0.tar.bz2#caabbeaa83928d0c3e3949261daa18eb
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@@ -381,14 +381,14 @@ https://conda.anaconda.org/conda-forge/noarch/dask-core-2022.4.1-pyhd8ed1ab_0.ta
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+https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.33.3-py39hb9d737c_0.tar.bz2#43f3c538bbcf6ed0da225891e11bf0a8
 https://conda.anaconda.org/conda-forge/linux-64/google-crc32c-1.1.2-py39hb81f231_2.tar.bz2#82e3a6c376316be89ec6770553bbfeaa
 https://conda.anaconda.org/conda-forge/linux-64/grpcio-1.45.0-py39h0f497a6_0.tar.bz2#8330bd83ab587f8336b1ed4794adf1cd
 https://conda.anaconda.org/conda-forge/linux-64/gsw-3.4.0-py39hd257fcd_3.tar.bz2#d1f6e5225f7e7da1db7b6682c78a6076
 https://conda.anaconda.org/conda-forge/linux-64/h5py-3.6.0-nompi_py39h7e08c79_100.tar.bz2#c13d4942b853efed9a9f4e77d2236cad
 https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-4.2.0-h40b6f09_0.tar.bz2#017b20e7e98860f0bfa7492ce16390a7
 https://conda.anaconda.org/conda-forge/linux-64/imagecodecs-2022.2.22-py39h9c0c3a3_4.tar.bz2#e0b4a94b7ccd02bb1ba3fdca2f8f6a15
-https://conda.anaconda.org/conda-forge/noarch/imageio-2.17.0-pyhcf75d05_0.tar.bz2#d31609e90216639cada43a10296f49aa
+https://conda.anaconda.org/conda-forge/noarch/imageio-2.18.0-pyhcf75d05_0.tar.bz2#d524728d32d42e0c711c8bc8976f5d5f
 https://conda.anaconda.org/conda-forge/noarch/importlib_metadata-4.11.3-hd8ed1ab_1.tar.bz2#bd6b6ae37c03e68061574d5e32fe5bd1
 https://conda.anaconda.org/conda-forge/linux-64/jasper-2.0.33-ha77e612_0.tar.bz2#054883e8ea7142e89bcbec08b5d401ea
 https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.1-pyhd8ed1ab_0.tar.bz2#40b3f446c61729cdd21ed9d85627df6e
@@ -413,23 +413,23 @@ https://conda.anaconda.org/conda-forge/linux-64/protobuf-3.19.4-py39he80948d_0.t
 https://conda.anaconda.org/conda-forge/linux-64/pydantic-1.9.0-py39hb9d737c_1.tar.bz2#5e0f9261bada9bc3cbd4269240993f0b
 https://conda.anaconda.org/conda-forge/linux-64/pyerfa-2.0.0.1-py39hd257fcd_2.tar.bz2#51c2ba5523e6c51970a40c1343d683c7
 https://conda.anaconda.org/conda-forge/linux-64/pygeos-0.12.0-py39h73b9895_2.tar.bz2#7a0e34d084c2d9c8a8065851fd88e3e8
-https://conda.anaconda.org/conda-forge/noarch/pygments-2.11.2-pyhd8ed1ab_0.tar.bz2#caef60540e2239e27bf62569a5015e3b
+https://conda.anaconda.org/conda-forge/noarch/pygments-2.12.0-pyhd8ed1ab_0.tar.bz2#cb27e2ded147e5bcc7eafc1c6d343cb3
 https://conda.anaconda.org/conda-forge/linux-64/pykdtree-1.3.4-py39hd257fcd_3.tar.bz2#e94d63b7fff7a1d0beaec6a5b0a5d12f
 https://conda.anaconda.org/conda-forge/noarch/pymbolic-2021.1-pyhd8ed1ab_0.tar.bz2#8631a5349b55966116131dad03d63f1c
 https://conda.anaconda.org/conda-forge/noarch/pyorbital-1.7.1-pyhd8ed1ab_0.tar.bz2#8133b453b7729bb5db2ff156db635950
-https://conda.anaconda.org/conda-forge/linux-64/pyproj-3.3.0-py39hcadae2f_2.tar.bz2#9b94366e3ddd24089aee8b5268957b85
+https://conda.anaconda.org/conda-forge/linux-64/pyproj-3.3.1-py39hcadae2f_0.tar.bz2#6a018c45d1411f8ac44a057130f04836
 https://conda.anaconda.org/conda-forge/linux-64/pyqt-impl-5.12.3-py39hde8b62d_8.tar.bz2#4863d6734a1bd7a86ac5ede53bf9b3c7
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-https://conda.anaconda.org/conda-forge/linux-64/pytest-7.1.1-py39hf3d152e_1.tar.bz2#ed83a83d257f08a9ac89d2e297ac65e1
+https://conda.anaconda.org/conda-forge/linux-64/pytest-7.1.2-py39hf3d152e_0.tar.bz2#a6bcf633d12aabdfc4cb32a09ebc0f31
 https://conda.anaconda.org/conda-forge/linux-64/pywavelets-1.3.0-py39hd257fcd_1.tar.bz2#c4b698994b2d8d2e659ae02202e6abe4
 https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml-0.17.21-py39hb9d737c_1.tar.bz2#2b94cf785616198b112170b9838262a4
 https://conda.anaconda.org/conda-forge/linux-64/scipy-1.8.0-py39hee8e79c_1.tar.bz2#8cc32d8307f5a8eb319e242c61d259ec
 https://conda.anaconda.org/conda-forge/linux-64/shapely-1.8.0-py39h73b9895_6.tar.bz2#a49a857c1b001e6ad6a7aab80fef6fb5
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-https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-1.4.35-py39hb9d737c_0.tar.bz2#aba3f9a2c924f9b91dbc45ed727b1985
+https://conda.anaconda.org/conda-forge/linux-64/sqlalchemy-1.4.36-py39hb9d737c_0.tar.bz2#e432937ad2a6822f770c1a925a08200c
 https://conda.anaconda.org/conda-forge/noarch/stack_data-0.2.0-pyhd8ed1ab_0.tar.bz2#8c0ce3e6bf18a0c810125aef58a2a6f3
 https://conda.anaconda.org/conda-forge/linux-64/terminado-0.13.3-py39hf3d152e_1.tar.bz2#bebf6da1adb04ed902ff335e61438a6e
-https://conda.anaconda.org/conda-forge/linux-64/tiledb-py-0.14.0-py39h7d821a0_1.tar.bz2#613d20f7c121cbe8dc5ee18ad634c8ad
+https://conda.anaconda.org/conda-forge/linux-64/tiledb-py-0.14.1-py39h7d821a0_0.tar.bz2#8203cef85162622cbc744eb0bd3d84ec
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 https://conda.anaconda.org/conda-forge/linux-64/aiohttp-3.8.1-py39hb9d737c_1.tar.bz2#8d847048d7b3b3ace26e40731297e37f
@@ -461,13 +461,13 @@ https://conda.anaconda.org/conda-forge/noarch/properscoring-0.1-py_0.tar.bz2#6c2
 https://conda.anaconda.org/conda-forge/noarch/pyopenssl-22.0.0-pyhd8ed1ab_0.tar.bz2#1d7e241dfaf5475e893d4b824bb71b44
 https://conda.anaconda.org/conda-forge/linux-64/pyqtchart-5.12-py39h0fcd23e_8.tar.bz2#d7d18728be87fdc0ddda3e65d41caa53
 https://conda.anaconda.org/conda-forge/linux-64/pyqtwebengine-5.12.1-py39h0fcd23e_8.tar.bz2#2098c2b2c9a38b43678a27819ff9433f
-https://conda.anaconda.org/conda-forge/linux-64/pyresample-1.23.0-py39h1832856_0.tar.bz2#1e683c79e5cbb9ec00541f2a3f3ed8b1
+https://conda.anaconda.org/conda-forge/linux-64/pyresample-1.23.0-py39h1832856_1.tar.bz2#1cf53547f0287814a0df8ac4179c0914
 https://conda.anaconda.org/conda-forge/noarch/python-box-6.0.2-pyhd8ed1ab_0.tar.bz2#b96adf535c6c58706897fb1c21c4cb54
 https://conda.anaconda.org/conda-forge/linux-64/python-geotiepoints-1.4.0-py39hd257fcd_0.tar.bz2#492bc48b8b6bbf10a65d2d4761432ea6
 https://conda.anaconda.org/conda-forge/linux-64/scikit-learn-1.0.2-py39h4dfa638_0.tar.bz2#389a22c8af77c8575a8a848fef79790e
 https://conda.anaconda.org/conda-forge/noarch/sparse-0.13.0-pyhd8ed1ab_0.tar.bz2#e9727043a1d08f997884851c9f428638
 https://conda.anaconda.org/conda-forge/noarch/starlette-0.17.1-pyhd8ed1ab_0.tar.bz2#9101f4d582cc8e31154dfd09be92bd98
-https://conda.anaconda.org/conda-forge/noarch/tifffile-2022.4.8-pyhd8ed1ab_0.tar.bz2#3691f40575834c88d4b8fa9751512fd2
+https://conda.anaconda.org/conda-forge/noarch/tifffile-2022.4.26-pyhd8ed1ab_0.tar.bz2#1f11b20c9bf2909cc6500b7c34748ee6
 https://conda.anaconda.org/conda-forge/noarch/timezonefinder-5.2.0-pyh050c7b8_0.tar.bz2#eba0fd68893bc1fa3200b5b32b911dfa
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 https://conda.anaconda.org/conda-forge/noarch/xarray-2022.3.0-pyhd8ed1ab_0.tar.bz2#46e2d57d8ddb0ddef0f3abd516d7e99a
@@ -487,7 +487,7 @@ https://conda.anaconda.org/conda-forge/noarch/nbclient-0.6.0-pyhd8ed1ab_0.tar.bz
 https://conda.anaconda.org/conda-forge/noarch/nbstripout-0.5.0-pyhd8ed1ab_0.tar.bz2#f2db95d8e4f7b6e9f6233be79933a693
 https://conda.anaconda.org/conda-forge/noarch/nc-time-axis-1.4.1-pyhd8ed1ab_0.tar.bz2#281b58948bf60a2582de9e548bcc5369
 https://conda.anaconda.org/conda-forge/noarch/networkx-2.8-pyhd8ed1ab_0.tar.bz2#f23297b9fa680ba13f9fdfba58bb3064
-https://conda.anaconda.org/conda-forge/noarch/odc-geo-0.1.1-pyhd8ed1ab_0.tar.bz2#d2c55dd6c0fe86dd6f03d7b186641284
+https://conda.anaconda.org/conda-forge/noarch/odc-geo-0.1.2-pyhd8ed1ab_0.tar.bz2#cabd16e0b0cec951621c2e40f189d496
 https://conda.anaconda.org/conda-forge/noarch/prompt-toolkit-3.0.29-pyha770c72_0.tar.bz2#9e720b57b22ef3032b4fb081697819dd
 https://conda.anaconda.org/conda-forge/linux-64/pyarrow-7.0.0-py39h42d110c_4_cpu.tar.bz2#8bd2b5162c43a6c0177774d7aaf1c98d
 https://conda.anaconda.org/conda-forge/linux-64/pyqt-5.12.3-py39hf3d152e_8.tar.bz2#466425e3ee3b190e06b8a5a7098421aa
@@ -508,7 +508,7 @@ https://conda.anaconda.org/conda-forge/linux-64/matplotlib-3.5.1-py39hf3d152e_0.
 https://conda.anaconda.org/conda-forge/noarch/morecantile-3.1.2-pyhd8ed1ab_0.tar.bz2#57b3cb87126c61715dbee44e88045d3c
 https://conda.anaconda.org/conda-forge/noarch/nbconvert-core-6.5.0-pyhd8ed1ab_0.tar.bz2#42f74c4b38a099025167e76a7437edf1
 https://conda.anaconda.org/conda-forge/noarch/requests-2.27.1-pyhd8ed1ab_0.tar.bz2#7c1c427246b057b8fa97200ecdb2ed62
-https://conda.anaconda.org/conda-forge/noarch/rioxarray-0.10.3-pyhd8ed1ab_0.tar.bz2#ca6c6559f5fba4a689af8c165dc38631
+https://conda.anaconda.org/conda-forge/noarch/rioxarray-0.11.1-pyhd8ed1ab_0.tar.bz2#f38cc4e99cc7bea91f1d926dcf785500
 https://conda.anaconda.org/conda-forge/linux-64/scikit-image-0.19.2-py39hde0f152_0.tar.bz2#200ceba1a31bf22629232285a550506f
 https://conda.anaconda.org/conda-forge/noarch/seaborn-0.11.2-hd8ed1ab_0.tar.bz2#e56b6a19f4b717eca7c68ad78196b075
 https://conda.anaconda.org/conda-forge/noarch/stackstac-0.4.1-pyhd8ed1ab_0.tar.bz2#325db66b405b8f63a3ad6f9c8382603b
@@ -520,7 +520,7 @@ https://conda.anaconda.org/conda-forge/noarch/dask-2022.4.1-pyhd8ed1ab_0.tar.bz2
 https://conda.anaconda.org/conda-forge/linux-64/docker-py-5.0.3-py39hf3d152e_2.tar.bz2#adbd239e5bf8b3f85fbc31fc98151e3c
 https://conda.anaconda.org/conda-forge/noarch/erddapy-1.2.1-pyhd8ed1ab_0.tar.bz2#05c9b7407d77e382ff114b17b0eb8c21
 https://conda.anaconda.org/conda-forge/noarch/folium-0.12.1.post1-pyhd8ed1ab_1.tar.bz2#44912901b45260e4338447b9d46f7058
-https://conda.anaconda.org/conda-forge/noarch/google-auth-2.6.5-pyh6c4a22f_0.tar.bz2#9744ee1831eb2f6cbe9d741115170fbd
+https://conda.anaconda.org/conda-forge/noarch/google-auth-2.6.6-pyh6c4a22f_0.tar.bz2#ad440163381987054135e5f397bcb95d
 https://conda.anaconda.org/conda-forge/linux-64/ipykernel-6.13.0-py39hef51801_0.tar.bz2#9fd2a497e68e4c715d9fdf3f36b44072
 https://conda.anaconda.org/conda-forge/noarch/jupyter_server-1.16.0-pyhd8ed1ab_1.tar.bz2#3b64b67485061d8296f55b1f463c324e
 https://conda.anaconda.org/conda-forge/noarch/jupyterhub-base-2.2.2-pyhd8ed1ab_1.tar.bz2#9f35d566b71bacc69429c8bad779ee50
@@ -570,7 +570,7 @@ https://conda.anaconda.org/conda-forge/noarch/s3fs-2022.3.0-pyhd8ed1ab_0.tar.bz2
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 https://conda.anaconda.org/conda-forge/noarch/xarrayutils-1.1.1-pyhd8ed1ab_0.tar.bz2#056a718565253012b9dbd25bed16abc4
 https://conda.anaconda.org/conda-forge/linux-64/xcape-0.1.4-py39h34f0aaa_1.tar.bz2#32bbef489f249492ec0208e0114bfe5a
-https://conda.anaconda.org/conda-forge/noarch/xgcm-0.7.0-pyhd8ed1ab_0.tar.bz2#3d4a7b71346d679d894679fecae11405
+https://conda.anaconda.org/conda-forge/noarch/xgcm-0.7.0-pyhd8ed1ab_1.tar.bz2#ca4db576ab62600b13d046c73841fec2
 https://conda.anaconda.org/conda-forge/noarch/xhistogram-0.3.1-pyhd8ed1ab_0.tar.bz2#a5637e98b47a7040b2b8b1d0b8b873de
 https://conda.anaconda.org/conda-forge/noarch/xmitgcm-0.5.2-pyhd8ed1ab_0.tar.bz2#fa9bab98df6ee06367c19eac79f17603
 https://conda.anaconda.org/conda-forge/noarch/xpublish-0.1.0-py_0.tar.bz2#43008e1afae8deef799b9ff6ed23a3f3
@@ -579,7 +579,7 @@ https://conda.anaconda.org/conda-forge/noarch/azure-identity-1.9.0-pyhd8ed1ab_0.
 https://conda.anaconda.org/conda-forge/noarch/azure-storage-blob-12.11.0-pyhd8ed1ab_0.tar.bz2#c44ed04715aa05f1fbd145de7b77889d
 https://conda.anaconda.org/conda-forge/noarch/dask-kubernetes-2022.1.0-pyhd8ed1ab_0.tar.bz2#3d5b8c0dc8eccd8b2344baff8eafaf47
 https://conda.anaconda.org/conda-forge/noarch/dask-ml-2022.1.22-pyhd8ed1ab_0.tar.bz2#3f8eb64b1b6559e99007aebaf4b322f4
-https://conda.anaconda.org/conda-forge/noarch/datashader-0.13.0-pyh6c4a22f_0.tar.bz2#bcc353a756d4ad98b97fcc5aa1f9ce4c
+https://conda.anaconda.org/conda-forge/noarch/datashader-0.14.0-pyh6c4a22f_0.tar.bz2#2c53599fe07002699100d1bcebad2f30
 https://conda.anaconda.org/conda-forge/noarch/earthdata-0.2.2-pyhd8ed1ab_0.tar.bz2#d9c8dc3b164c2cbcf6a80cbbfa0f5688
 https://conda.anaconda.org/conda-forge/noarch/geocube-0.2.0-pyhd8ed1ab_0.tar.bz2#5a6c6d2db414292f09e99a3e8a5d7fd4
 https://conda.anaconda.org/conda-forge/noarch/google-cloud-core-2.2.2-pyh6c4a22f_0.tar.bz2#5e07884f8de0b9dcd367f791e6e98b86
diff --git a/pangeo-notebook/packages.txt b/pangeo-notebook/packages.txt
index 89a1a171..5de21d6e 100644
--- a/pangeo-notebook/packages.txt
+++ b/pangeo-notebook/packages.txt
@@ -49,7 +49,7 @@ binutils_impl_linux-64==2.36.1
 binutils_linux-64==2.36
 bleach==5.0.0
 blinker==1.4
-blosc==1.21.0
+blosc==1.21.1
 bokeh==2.4.2
 boost-cpp==1.74.0
 boto3==1.21.21
@@ -92,7 +92,7 @@ colorcet==3.0.0
 configobj==5.0.6
 croniter==0.3.36
 cryptography==36.0.2
-curl==7.82.0
+curl==7.83.0
 cycler==0.11.0
 cytoolz==0.11.2
 dask==2022.4.1
@@ -102,7 +102,7 @@ dask-glm==0.2.0
 dask-kubernetes==2022.1.0
 dask-labextension==5.2.0
 dask-ml==2022.1.22
-datashader==0.13.0
+datashader==0.14.0
 datashape==0.5.4
 dbus==1.13.6
 debugpy==1.6.0
@@ -141,7 +141,7 @@ font-ttf-ubuntu==0.83
 fontconfig==2.14.0
 fonts-conda-ecosystem==1
 fonts-conda-forge==1
-fonttools==4.32.0
+fonttools==4.33.3
 freeglut==3.2.2
 freetype==2.10.4
 freexl==1.0.6
@@ -166,14 +166,14 @@ geotiff==1.7.1
 geoviews-core==1.9.5
 gettext==0.19.8.1
 gflags==2.2.2
-gh==2.8.0
+gh==2.9.0
 giflib==5.2.1
 git-lfs==3.1.4
 glog==0.6.0
 gmp==6.2.1
 gnutls==3.6.13
 google-api-core==2.5.0
-google-auth==2.6.5
+google-auth==2.6.6
 google-auth-oauthlib==0.5.1
 google-cloud-core==2.2.2
 google-cloud-storage==2.1.0
@@ -202,7 +202,7 @@ hvplot==0.7.3
 icu==69.1
 idna==3.3
 imagecodecs==2022.2.22
-imageio==2.17.0
+imageio==2.18.0
 importlib-metadata==4.11.3
 importlib_metadata==4.11.3
 importlib_resources==5.7.1
@@ -265,7 +265,7 @@ libbrotlienc==1.0.9
 libcblas==3.9.0
 libclang==13.0.1
 libcrc32c==1.1.2
-libcurl==7.82.0
+libcurl==7.83.0
 libdap4==3.20.6
 libdeflate==1.10
 libdrm==2.4.109
@@ -324,11 +324,11 @@ libzip==1.8.0
 libzlib==1.2.11
 libzopfli==1.0.3
 llvmlite==0.36.0
-locket==0.2.0
+locket==1.0.0
 lxml==4.8.0
 lz4==4.0.0
 lz4-c==1.9.3
-mailchecker==4.1.15
+mailchecker==4.1.16
 mako==1.2.0
 mapclassify==2.4.3
 markdown==3.3.6
@@ -354,8 +354,8 @@ multipledispatch==0.6.0
 munch==2.5.0
 munkres==1.1.4
 mypy_extensions==0.4.3
-mysql-common==8.0.28
-mysql-libs==8.0.28
+mysql-common==8.0.29
+mysql-libs==8.0.29
 natsort==8.1.0
 nb_conda_kernels==2.3.1
 nbclassic==0.3.7
@@ -383,7 +383,7 @@ numba==0.53.1
 numcodecs==0.9.1
 numpy==1.22.3
 oauthlib==3.2.0
-odc-geo==0.1.1
+odc-geo==0.1.2
 openh264==2.1.1
 openjpeg==2.4.0
 openssl==1.1.1n
@@ -406,10 +406,10 @@ patsy==0.5.2
 pcre==8.45
 pendulum==2.1.2
 pexpect==4.8.0
-phonenumbers==8.12.46
+phonenumbers==8.12.47
 pickleshare==0.7.5
 pillow==9.1.0
-pint==0.19.1
+pint==0.19.2
 pip==20.3.4
 pixman==0.40.0
 pluggy==1.0.0
@@ -443,14 +443,14 @@ pydantic==1.9.0
 pydap==3.3.0
 pyerfa==2.0.0.1
 pygeos==0.12.0
-pygments==2.11.2
+pygments==2.12.0
 pyjwt==2.3.0
 pykdtree==1.3.4
 pymbolic==2021.1
 pyopenssl==22.0.0
 pyorbital==1.7.1
 pyparsing==3.0.8
-pyproj==3.3.0
+pyproj==3.3.1
 pyqt==5.12.3
 pyqt-impl==5.12.3
 pyqt5-sip==4.19.18
@@ -463,7 +463,7 @@ pysocks==1.7.1
 pyspectral==0.11.0
 pystac==1.2.0
 pystac-client==0.3.2
-pytest==7.1.1
+pytest==7.1.2
 python==3.9.12
 python-benedict==0.24.3
 python-blosc==1.10.2
@@ -482,7 +482,7 @@ python-kubernetes==23.3.0
 python-slugify==6.1.1
 python-utils==3.1.0
 python_abi==3.9
-pytools==2022.1.4
+pytools==2022.1.5
 pytz==2022.1
 pytzdata==2020.1
 pyu2f==0.1.5
@@ -498,7 +498,7 @@ rechunker==0.4.2
 requests==2.27.1
 requests-oauthlib==1.3.1
 rio-cogeo==3.2.0
-rioxarray==0.10.3
+rioxarray==0.11.1
 rsa==4.7.2
 rtree==1.0.0
 ruamel.yaml==0.17.21
@@ -524,7 +524,7 @@ snuggs==1.4.7
 sortedcontainers==2.4.0
 soupsieve==2.3.1
 sparse==0.13.0
-sqlalchemy==1.4.35
+sqlalchemy==1.4.36
 sqlite==3.38.2
 stack_data==0.2.0
 stackstac==0.4.1
@@ -537,9 +537,9 @@ tblib==1.7.0
 terminado==0.13.3
 text-unidecode==1.3
 threadpoolctl==3.1.0
-tifffile==2022.4.8
+tifffile==2022.4.26
 tiledb==2.8.1
-tiledb-py==0.14.0
+tiledb-py==0.14.1
 timezonefinder==5.2.0
 tinycss2==1.1.1
 tk==8.6.12

From 536d580f3f09e45a9a690294f437b4f6b5a3b55a Mon Sep 17 00:00:00 2001
From: Wei Ji <23487320+weiji14@users.noreply.github.com>
Date: Wed, 27 Apr 2022 15:45:01 -0400
Subject: [PATCH 3/8] Use libopenblas workaround

---
 pytorch-notebook/conda-linux-64.lock | 624 +++++++++++++++++++++++++++
 pytorch-notebook/environment.yml     |   3 +
 pytorch-notebook/packages.txt        | 622 ++++++++++++++++++++++++++
 3 files changed, 1249 insertions(+)
 create mode 100644 pytorch-notebook/conda-linux-64.lock
 create mode 100644 pytorch-notebook/packages.txt

diff --git a/pytorch-notebook/conda-linux-64.lock b/pytorch-notebook/conda-linux-64.lock
new file mode 100644
index 00000000..5fdf08fe
--- /dev/null
+++ b/pytorch-notebook/conda-linux-64.lock
@@ -0,0 +1,624 @@
+# Generated by conda-lock.
+# platform: linux-64
+# input_hash: 08fd60e8b02b9a8760289be228284ceba83a9685cf4cc9f9a570e5ac6bc55c6c
+@EXPLICIT
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+https://conda.anaconda.org/conda-forge/noarch/ipytree-0.2.1-pyhd8ed1ab_0.tar.bz2#e3102a6d6aae89bc6d8e3e2f0fc7f7c9
+https://conda.anaconda.org/conda-forge/noarch/ipyurl-0.1.2-pyh3684270_1.tar.bz2#a72d315bc1ed6ddf0b2ace197b10886b
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+https://conda.anaconda.org/conda-forge/noarch/xarray_leaflet-0.1.15-pyhd8ed1ab_0.tar.bz2#33925089afaae43154afe188bdbe0670
diff --git a/pytorch-notebook/environment.yml b/pytorch-notebook/environment.yml
index cb2ebbf2..70f574c9 100644
--- a/pytorch-notebook/environment.yml
+++ b/pytorch-notebook/environment.yml
@@ -5,4 +5,7 @@ channels:
  - conda-forge
 dependencies:
  - cudatoolkit=11
+ # needed for pytorch to work
+ # https://github.com/NVIDIA/MinkowskiEngine/issues/354#issuecomment-880555195
+ - anaconda::libopenblas
  - pytorch-gpu
diff --git a/pytorch-notebook/packages.txt b/pytorch-notebook/packages.txt
new file mode 100644
index 00000000..ffe61479
--- /dev/null
+++ b/pytorch-notebook/packages.txt
@@ -0,0 +1,622 @@
+# List of packages and versions installed in the environment
+# Generated by parsing conda-linux-64.lock, please use that as source of truth
+_libgcc_mutex==0.1
+_openmp_mutex==4.5
+abseil-cpp==20210324.2
+adal==1.2.7
+adlfs==2022.4.0
+affine==2.3.1
+aiobotocore==2.2.0
+aiohttp==3.8.1
+aioitertools==0.10.0
+aiosignal==1.2.0
+alembic==1.7.7
+alsa-lib==1.2.3
+anyio==3.5.0
+aom==3.3.0
+appdirs==1.4.4
+argon2-cffi==21.3.0
+argon2-cffi-bindings==21.2.0
+argopy==0.1.11
+arrow-cpp==7.0.0
+asciitree==0.3.3
+asgiref==3.5.0
+asn1crypto==1.5.1
+astropy==5.0.4
+asttokens==2.0.5
+async-timeout==4.0.2
+async_generator==1.10
+atk-1.0==2.36.0
+attrs==21.4.0
+av==9.2.0
+aws-c-cal==0.5.11
+aws-c-common==0.6.2
+aws-c-event-stream==0.2.7
+aws-c-io==0.10.5
+aws-checksums==0.1.11
+aws-sdk-cpp==1.8.186
+awscli==1.22.76
+azure-core==1.23.1
+azure-datalake-store==0.0.51
+azure-identity==1.9.0
+azure-storage-blob==12.11.0
+babel==2.9.1
+backcall==0.2.0
+backports==1.0
+backports.functools_lru_cache==1.6.4
+beautifulsoup4==4.11.1
+binutils_impl_linux-64==2.36.1
+binutils_linux-64==2.36
+bleach==5.0.0
+blinker==1.4
+blosc==1.21.1
+bokeh==2.4.2
+boost-cpp==1.74.0
+boto3==1.21.21
+botocore==1.24.21
+bottleneck==1.3.4
+bounded-pool-executor==0.0.3
+branca==0.4.2
+brotli==1.0.9
+brotli-bin==1.0.9
+brotlipy==0.7.0
+brunsli==0.1
+bzip2==1.0.8
+c-ares==1.18.1
+c-blosc2==2.0.4
+ca-certificates==2021.10.8
+cached-property==1.5.2
+cached_property==1.5.2
+cachetools==5.0.0
+cachey==0.2.1
+cairo==1.16.0
+cartopy==0.20.2
+certifi==2021.10.8
+certipy==0.1.3
+cf_xarray==0.7.2
+cffi==1.15.0
+cfgrib==0.9.10.1
+cfitsio==4.1.0
+cftime==1.6.0
+cgen==2020.1
+charls==2.3.4
+charset-normalizer==2.0.12
+ciso==0.1.0
+click==8.1.2
+click-plugins==1.1.1
+cligj==0.7.2
+cloudpickle==2.0.0
+cmip6_preprocessing==0.5.0
+colorama==0.4.3
+colorcet==3.0.0
+configobj==5.0.6
+croniter==0.3.36
+cryptography==36.0.2
+cudatoolkit==11.6.0
+cudnn==8.2.1.32
+curl==7.83.0
+cycler==0.11.0
+cytoolz==0.11.2
+dask==2022.4.1
+dask-core==2022.4.1
+dask-gateway==0.9.0
+dask-glm==0.2.0
+dask-kubernetes==2022.1.0
+dask-labextension==5.2.0
+dask-ml==2022.1.22
+datashader==0.14.0
+datashape==0.5.4
+dbus==1.13.6
+debugpy==1.6.0
+decorator==5.1.1
+defusedxml==0.7.1
+descartes==1.1.0
+distributed==2022.4.1
+docker-py==5.0.3
+docker-pycreds==0.4.0
+docopt==0.6.2
+docrep==0.3.2
+docutils==0.15.2
+donfig==0.7.0
+earthdata==0.2.2
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+findlibs==0.0.2
+fiona==1.8.21
+flit-core==3.7.1
+folium==0.12.1.post1
+font-ttf-dejavu-sans-mono==2.37
+font-ttf-inconsolata==3.000
+font-ttf-source-code-pro==2.038
+font-ttf-ubuntu==0.83
+fontconfig==2.14.0
+fonts-conda-ecosystem==1
+fonts-conda-forge==1
+fonttools==4.33.3
+freeglut==3.2.2
+freetype==2.10.4
+freexl==1.0.6
+fribidi==1.0.10
+frozenlist==1.3.0
+fsspec==2022.3.0
+ftfy==6.1.1
+future==0.18.2
+gcc_impl_linux-64==11.2.0
+gcc_linux-64==11.2.0
+gcm_filters==0.2.3
+gcsfs==2022.3.0
+gdal==3.4.2
+gdk-pixbuf==2.42.8
+geocube==0.2.0
+geographiclib==1.52
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+geopandas-base==0.10.2
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+geos==3.10.2
+geotiff==1.7.1
+geoviews-core==1.9.5
+gettext==0.19.8.1
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+gh==2.9.0
+giflib==5.2.1
+git-lfs==3.1.4
+glog==0.6.0
+gmp==6.2.1
+gnutls==3.6.13
+google-api-core==2.5.0
+google-auth==2.6.6
+google-auth-oauthlib==0.5.1
+google-cloud-core==2.2.2
+google-cloud-storage==2.1.0
+google-crc32c==1.1.2
+google-resumable-media==2.1.0
+googleapis-common-protos==1.56.0
+graphite2==1.3.13
+graphviz==3.0.0
+greenlet==1.1.2
+grpc-cpp==1.43.2
+grpcio==1.45.0
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+gstreamer==1.20.1
+gsw==3.4.0
+gtk2==2.24.33
+gts==0.7.6
+h11==0.13.0
+h5netcdf==1.0.0
+h5py==3.6.0
+harfbuzz==4.2.0
+hdf4==4.2.15
+hdf5==1.12.1
+heapdict==1.0.1
+holoviews==1.14.8
+hvplot==0.7.3
+icu==69.1
+idna==3.3
+imagecodecs==2022.2.22
+imageio==2.18.0
+importlib-metadata==4.11.3
+importlib_metadata==4.11.3
+importlib_resources==5.7.1
+iniconfig==1.1.1
+intake==0.6.5
+intake-esm==2021.8.17
+intake-geopandas==0.4.0
+intake-stac==0.3.0
+intake-xarray==0.6.0
+intel-openmp==2022.0.1
+ipykernel==6.13.0
+ipyleaflet==0.16.0
+ipyspin==0.1.5
+ipython==8.2.0
+ipython_genutils==0.2.0
+ipytree==0.2.1
+ipyurl==0.1.2
+ipywidgets==7.7.0
+isodate==0.6.1
+jasper==2.0.33
+jbig==2.1
+jedi==0.18.1
+jinja2==3.1.1
+jmespath==1.0.0
+joblib==1.1.0
+jpeg==9e
+json-c==0.16
+json5==0.9.5
+jsonschema==4.4.0
+jupyter-panel-proxy==0.1.0
+jupyter-resource-usage==0.6.1
+jupyter-server-proxy==3.2.1
+jupyter_client==7.2.2
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+jupyter_telemetry==0.1.0
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+keyutils==1.6.1
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+kubernetes_asyncio==22.6.4
+lame==3.100
+lcms2==2.12
+ld_impl_linux-64==2.36.1
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+python==3.9.12
+python-benedict==0.24.3
+python-blosc==1.10.2
+python-box==6.0.2
+python-cmr==0.4.1
+python-dateutil==2.7.5
+python-eccodes==1.4.0
+python-fastjsonschema==2.15.3
+python-fsutil==0.6.0
+python-geotiepoints==1.4.0
+python-gist==0.10.6
+python-gnupg==0.4.8
+python-graphviz==0.20
+python-json-logger==2.0.1
+python-kubernetes==23.3.0
+python-slugify==6.1.1
+python-utils==3.1.0
+python_abi==3.9
+pytools==2022.1.5
+pytorch==1.10.2
+pytorch-gpu==1.10.2
+pytz==2022.1
+pytzdata==2020.1
+pyu2f==0.1.5
+pyviz_comms==2.2.0
+pywavelets==1.3.0
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+pyzmq==22.3.0
+qt==5.12.9
+rasterio==1.2.10
+re2==2022.02.01
+readline==8.1
+rechunker==0.4.2
+requests==2.27.1
+requests-oauthlib==1.3.1
+rio-cogeo==3.2.0
+rioxarray==0.11.1
+rsa==4.7.2
+rtree==1.0.0
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+ruamel.yaml.clib==0.2.6
+s2n==1.0.10
+s3fs==2022.3.0
+s3transfer==0.5.2
+sat-stac==0.4.1
+satpy==0.36.0
+scikit-image==0.19.2
+scikit-learn==1.0.2
+scipy==1.8.0
+seaborn==0.11.2
+seaborn-base==0.11.2
+send2trash==1.8.0
+setuptools==59.5.0
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+simpervisor==0.4
+six==1.16.0
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+sparse==0.13.0
+sqlalchemy==1.4.36
+sqlite==3.38.2
+stack_data==0.2.0
+stackstac==0.4.1
+starlette==0.17.1
+statsmodels==0.13.2
+svt-av1==0.9.1
+sysroot_linux-64==2.12
+tabulate==0.8.9
+tblib==1.7.0
+terminado==0.13.3
+text-unidecode==1.3
+threadpoolctl==3.1.0
+tifffile==2022.4.26
+tiledb==2.8.1
+tiledb-py==0.14.1
+timezonefinder==5.2.0
+tinycss2==1.1.1
+tk==8.6.12
+toml==0.10.2
+tomli==2.0.1
+toolz==0.11.2
+tornado==6.1
+tqdm==4.64.0
+traitlets==5.1.1
+traittypes==0.2.1
+trollimage==1.18.3
+trollsift==0.4.0
+typing-extensions==4.2.0
+typing_extensions==4.2.0
+tzcode==2022a
+tzdata==2022a
+ujson==5.2.0
+unicodedata2==14.0.0
+unidecode==1.3.4
+urllib3==1.26.9
+uvicorn==0.17.6
+wcwidth==0.2.5
+webencodings==0.5.1
+webob==1.8.7
+websocket-client==1.3.2
+wheel==0.37.1
+widgetsnbextension==3.6.0
+wrapt==1.14.0
+x264==1!161.3030
+x265==3.5
+xarray==2022.3.0
+xarray-spatial==0.3.3
+xarray_leaflet==0.1.15
+xarrayutils==1.1.1
+xcape==0.1.4
+xerces-c==3.2.3
+xesmf==0.6.2
+xgcm==0.7.0
+xhistogram==0.3.1
+xmitgcm==0.5.2
+xmltodict==0.12.0
+xorg-fixesproto==5.0
+xorg-inputproto==2.3.2
+xorg-kbproto==1.0.7
+xorg-libice==1.0.10
+xorg-libsm==1.2.3
+xorg-libx11==1.7.2
+xorg-libxau==1.0.9
+xorg-libxdmcp==1.1.3
+xorg-libxext==1.3.4
+xorg-libxfixes==5.0.3
+xorg-libxi==1.7.10
+xorg-libxrender==0.9.10
+xorg-renderproto==0.11.1
+xorg-xextproto==7.3.0
+xorg-xproto==7.0.31
+xpublish==0.1.0
+xrft==0.4.1
+xskillscore==0.0.24
+xyzservices==2022.4.0
+xz==5.2.5
+yaml==0.2.5
+yarl==1.7.2
+zarr==2.11.3
+zeromq==4.3.4
+zfp==0.5.5
+zict==2.1.0
+zipp==3.8.0
+zlib==1.2.11
+zstd==1.5.2

From ca2c0d451dbb5c5108026909dd965a8b778f2ff9 Mon Sep 17 00:00:00 2001
From: Wei Ji <23487320+weiji14@users.noreply.github.com>
Date: Wed, 27 Apr 2022 15:49:07 -0400
Subject: [PATCH 4/8] Add torchgeo

---
 pytorch-notebook/conda-linux-64.lock | 32 +++++++++++++++++++---------
 pytorch-notebook/environment.yml     |  1 +
 pytorch-notebook/packages.txt        | 30 ++++++++++++++++++--------
 3 files changed, 44 insertions(+), 19 deletions(-)

diff --git a/pytorch-notebook/conda-linux-64.lock b/pytorch-notebook/conda-linux-64.lock
index 5fdf08fe..b670983f 100644
--- a/pytorch-notebook/conda-linux-64.lock
+++ b/pytorch-notebook/conda-linux-64.lock
@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: 08fd60e8b02b9a8760289be228284ceba83a9685cf4cc9f9a570e5ac6bc55c6c
+# input_hash: 200c81f94f33ef62afd7c6f455443525cf16d479b5f5adce54e9383858486b14
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/linux-64/gh-2.9.0-ha8f183a_0.tar.bz2#243fca5fe2a44f72f68da93b44089c9a
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@@ -70,14 +70,12 @@ https://conda.anaconda.org/conda-forge/linux-64/libnsl-2.0.0-h7f98852_0.tar.bz2#
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 https://conda.anaconda.org/conda-forge/linux-64/libopus-1.3.1-h7f98852_1.tar.bz2#15345e56d527b330e1cacbdf58676e8f
-https://conda.anaconda.org/conda-forge/linux-64/libpciaccess-0.16-h516909a_0.tar.bz2#b38752a755b9c64f07651fcc0084f878
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-https://conda.anaconda.org/conda-forge/linux-64/libvpx-1.11.0-h9c3ff4c_3.tar.bz2#ebe18273eebadbb4dfb13f1062e054e9
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@@ -94,10 +92,8 @@ https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.
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-https://conda.anaconda.org/conda-forge/linux-64/svt-av1-0.9.1-h27087fc_0.tar.bz2#c31f59b9f50d7f82bb3e39ff5c64345e
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 https://conda.anaconda.org/conda-forge/linux-64/x264-1!161.3030-h7f98852_1.tar.bz2#4c9106542ee02c991b64b575ca4ea029
-https://conda.anaconda.org/conda-forge/linux-64/x265-3.5-h924138e_3.tar.bz2#e7f6ed84d4623d52ee581325c1587a6b
 https://conda.anaconda.org/conda-forge/linux-64/xorg-inputproto-2.3.2-h7f98852_1002.tar.bz2#bcd1b3396ec6960cbc1d2855a9e60b2b
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@@ -120,7 +116,6 @@ https://conda.anaconda.org/conda-forge/linux-64/gnutls-3.6.13-h85f3911_1.tar.bz2
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-https://conda.anaconda.org/conda-forge/linux-64/libdrm-2.4.109-h7f98852_0.tar.bz2#18fe5c42a27ba54c07a7cde55902ff91
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 https://conda.anaconda.org/conda-forge/linux-64/libllvm13-13.0.1-hf817b99_2.tar.bz2#47da3ce0d8b2e65ccb226c186dd91eba
@@ -211,6 +206,7 @@ https://conda.anaconda.org/conda-forge/noarch/entrypoints-0.4-pyhd8ed1ab_0.tar.b
 https://conda.anaconda.org/conda-forge/noarch/executing-0.8.3-pyhd8ed1ab_0.tar.bz2#8d70f4543c1f701b946f85e9f9a00800
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+https://conda.anaconda.org/conda-forge/linux-64/ffmpeg-4.3.2-h37c90e5_3.tar.bz2#6a70bf602abac41eef61275280c1e834
 https://conda.anaconda.org/conda-forge/noarch/findlibs-0.0.2-pyhd8ed1ab_0.tar.bz2#c2a60dd9f1210b8ee2037f7d0ec6251a
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 https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.0-h8e229c2_0.tar.bz2#f314f79031fec74adc9bff50fbaffd89
@@ -227,7 +223,6 @@ https://conda.anaconda.org/conda-forge/noarch/jmespath-1.0.0-pyhd8ed1ab_0.tar.bz
 https://conda.anaconda.org/conda-forge/noarch/json5-0.9.5-pyh9f0ad1d_0.tar.bz2#10759827a94e6b14996e81fb002c0bda
 https://conda.anaconda.org/conda-forge/noarch/jupyterlab_widgets-1.1.0-pyhd8ed1ab_0.tar.bz2#e963a4a39cf442dbe5503f66edda083d
 https://conda.anaconda.org/conda-forge/linux-64/libgoogle-cloud-1.35.0-h6945097_2.tar.bz2#cd98869ef2ab424c943dcd3e1d8cd354
-https://conda.anaconda.org/conda-forge/linux-64/libva-2.14.0-h7f98852_0.tar.bz2#b737d8d48743065ea4164b381f120261
 https://conda.anaconda.org/conda-forge/noarch/locket-1.0.0-pyhd8ed1ab_0.tar.bz2#91e27ef3d05cc772ce627e51cff111c4
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@@ -247,6 +242,7 @@ https://conda.anaconda.org/conda-forge/noarch/pure_eval-0.2.2-pyhd8ed1ab_0.tar.b
 https://conda.anaconda.org/conda-forge/noarch/py-1.11.0-pyh6c4a22f_0.tar.bz2#b4613d7e7a493916d867842a6a148054
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 https://conda.anaconda.org/conda-forge/noarch/pycparser-2.21-pyhd8ed1ab_0.tar.bz2#076becd9e05608f8dc72757d5f3a91ff
+https://conda.anaconda.org/conda-forge/noarch/pydeprecate-0.3.2-pyhd8ed1ab_0.tar.bz2#91226df80767b2e98a5aa1b4a98b7f9a
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@@ -264,6 +260,7 @@ https://conda.anaconda.org/conda-forge/noarch/sortedcontainers-2.4.0-pyhd8ed1ab_
 https://conda.anaconda.org/conda-forge/noarch/soupsieve-2.3.1-pyhd8ed1ab_0.tar.bz2#d821b295c4bd18ad27e1e19543a5784a
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+https://conda.anaconda.org/conda-forge/noarch/tensorboard-plugin-wit-1.8.1-pyhd8ed1ab_0.tar.bz2#0adae6ededf20046d74a3f9343269efd
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@@ -275,12 +272,15 @@ https://conda.anaconda.org/conda-forge/noarch/unidecode-1.3.4-pyhd8ed1ab_0.tar.b
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+https://conda.anaconda.org/conda-forge/linux-64/antlr-python-runtime-4.9.3-py39hf3d152e_0.tar.bz2#484f8200d40085319db5d7a5a1e1687f
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-https://conda.anaconda.org/conda-forge/linux-64/ffmpeg-4.4.1-hd7ab26d_2.tar.bz2#8c63301c04f56ef7e80598b19de98a97
 https://conda.anaconda.org/conda-forge/linux-64/freeglut-3.2.2-h9c3ff4c_1.tar.bz2#1192066d1296de9b492175a4cf43fe8a
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@@ -357,6 +356,7 @@ https://conda.anaconda.org/conda-forge/linux-64/rtree-1.0.0-py39hb102c33_1.tar.b
 https://conda.anaconda.org/conda-forge/linux-64/ruamel.yaml.clib-0.2.6-py39hb9d737c_1.tar.bz2#a0fabd69dd35bb24ec84d28dc01c3c5b
 https://conda.anaconda.org/conda-forge/linux-64/setuptools-59.5.0-py39hf3d152e_0.tar.bz2#ee311e355e2eccecea5e5a22a986123f
 https://conda.anaconda.org/conda-forge/linux-64/sniffio-1.2.0-py39hf3d152e_3.tar.bz2#e2cb114a39b27ef1687a0c2c3e793cf6
+https://conda.anaconda.org/conda-forge/linux-64/tensorboard-data-server-0.6.0-py39hd97740a_2.tar.bz2#7a618cdeae52fa632fdd8914dc453ceb
 https://conda.anaconda.org/conda-forge/linux-64/tiledb-2.8.1-h1e4a385_0.tar.bz2#e946af89677486a37676150f347de1de
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 https://conda.anaconda.org/conda-forge/linux-64/tornado-6.1-py39hb9d737c_3.tar.bz2#5e13a2d214ed4184969df363a1aab420
@@ -373,7 +373,7 @@ https://conda.anaconda.org/conda-forge/linux-64/anyio-3.5.0-py39hf3d152e_0.tar.b
 https://conda.anaconda.org/conda-forge/linux-64/argon2-cffi-bindings-21.2.0-py39hb9d737c_2.tar.bz2#76139de3552a2046135eb0b2d02a9c85
 https://conda.anaconda.org/conda-forge/linux-64/arrow-cpp-7.0.0-py39h965a45d_4_cpu.tar.bz2#b03b51c36476a6e0db7b0348e0b8389c
 https://conda.anaconda.org/conda-forge/noarch/async-timeout-4.0.2-pyhd8ed1ab_0.tar.bz2#25e79f9a1133556671becbd65a170c78
-https://conda.anaconda.org/conda-forge/linux-64/av-9.2.0-py39hbd8a108_0.tar.bz2#bfe4d864d2424c768345f1f478176eba
+https://conda.anaconda.org/conda-forge/linux-64/av-9.1.0-py39h8d29763_0.tar.bz2#b06e50e7c2be75bbb1a6c00ba93defee
 https://conda.anaconda.org/conda-forge/noarch/backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0.tar.bz2#c5b3edc62d6309088f4970b3eaaa65a6
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 https://conda.anaconda.org/conda-forge/linux-64/bottleneck-1.3.4-py39hd257fcd_1.tar.bz2#d73b5da2a850eb047a358e97780e29d7
@@ -388,6 +388,7 @@ https://conda.anaconda.org/conda-forge/linux-64/cryptography-36.0.2-py39hd97740a
 https://conda.anaconda.org/conda-forge/noarch/dask-core-2022.4.1-pyhd8ed1ab_0.tar.bz2#5fee12b7b8acb170c47d425d3b069f3c
 https://conda.anaconda.org/conda-forge/noarch/datashape-0.5.4-py_1.tar.bz2#50ddfce434ea596fc4497085f403a9d5
 https://conda.anaconda.org/conda-forge/noarch/donfig-0.7.0-pyhd8ed1ab_1.tar.bz2#d1e0d0de441debd742096ca3d6493f08
+https://conda.anaconda.org/conda-forge/noarch/einops-0.4.1-pyhd8ed1ab_0.tar.bz2#c56a7a4f28f3026dc0ebcbde8979522d
 https://conda.anaconda.org/conda-forge/noarch/eofs-1.4.0-py_0.tar.bz2#6e166cd37cfeadefcfca1ffe00f222bb
 https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.33.3-py39hb9d737c_0.tar.bz2#43f3c538bbcf6ed0da225891e11bf0a8
 https://conda.anaconda.org/conda-forge/linux-64/google-crc32c-1.1.2-py39hb81f231_2.tar.bz2#82e3a6c376316be89ec6770553bbfeaa
@@ -412,6 +413,7 @@ https://conda.anaconda.org/conda-forge/noarch/munch-2.5.0-py_0.tar.bz2#31d9e9be5
 https://conda.anaconda.org/conda-forge/linux-64/netcdf-fortran-4.5.4-mpi_mpich_h1364a43_0.tar.bz2#b6ba4f487ef9fd5d353ff277df06d133
 https://conda.anaconda.org/conda-forge/linux-64/numba-0.53.1-py39h56b8d98_1.tar.bz2#2b8674a6cb39ccd00833311aae90640e
 https://conda.anaconda.org/conda-forge/linux-64/numcodecs-0.9.1-py39he80948d_2.tar.bz2#8cd2d62dc2dda0d8b6c9e05596dadfa1
+https://conda.anaconda.org/conda-forge/linux-64/omegaconf-2.1.2-py39hf3d152e_0.tar.bz2#598d722cd2f4b0c66d6eabbb86eddd32
 https://conda.anaconda.org/conda-forge/linux-64/pandas-1.4.2-py39h1832856_1.tar.bz2#264505bcd299b8d564195cfb3e6038f0
 https://conda.anaconda.org/conda-forge/linux-64/pendulum-2.1.2-py39hb9d737c_4.tar.bz2#a12248feadad8dca8324220a3ef04a7c
 https://conda.anaconda.org/conda-forge/noarch/pip-20.3.4-pyhd8ed1ab_0.tar.bz2#a9f505dda2243420dc8e8681cda95be8
@@ -448,6 +450,7 @@ https://conda.anaconda.org/conda-forge/linux-64/astropy-5.0.4-py39hd257fcd_0.tar
 https://conda.anaconda.org/conda-forge/linux-64/bokeh-2.4.2-py39hf3d152e_1.tar.bz2#92bbf85cc20befc6759ec471762ccc25
 https://conda.anaconda.org/conda-forge/noarch/branca-0.4.2-pyhd8ed1ab_0.tar.bz2#836c975d3ae4f21c3cd047c10b15a7cf
 https://conda.anaconda.org/conda-forge/linux-64/eccodes-2.25.0-hc08acdf_0.tar.bz2#b7b2677cdf0fe54885d72280ecff58af
+https://conda.anaconda.org/conda-forge/noarch/efficientnet-pytorch-0.6.3-pyh9f0ad1d_0.tar.bz2#aad4a727955194b4f4d4c37f7f76a297
 https://conda.anaconda.org/conda-forge/linux-64/esmf-8.2.0-mpi_mpich_h4975321_100.tar.bz2#56f5c650937b1667ad0a557a0dff3bc4
 https://conda.anaconda.org/conda-forge/noarch/fastjmd95-0.2.1-pyh44b312d_0.tar.bz2#1c964b3de70514bbf641464d78f4fb5a
 https://conda.anaconda.org/conda-forge/noarch/geopandas-base-0.10.2-pyha770c72_1.tar.bz2#10584badfcd9fa04e6fc9a4d5dad1513
@@ -456,6 +459,7 @@ https://conda.anaconda.org/conda-forge/linux-64/googleapis-common-protos-1.56.0-
 https://conda.anaconda.org/conda-forge/noarch/h5netcdf-1.0.0-pyhd8ed1ab_0.tar.bz2#b332c9d437d87810abd1285a4ae7c94b
 https://conda.anaconda.org/conda-forge/noarch/jupyter_telemetry-0.1.0-pyhd8ed1ab_1.tar.bz2#bb9ebdb6d5aa2622484aff1faceee181
 https://conda.anaconda.org/conda-forge/noarch/jupyterlab_pygments-0.2.2-pyhd8ed1ab_0.tar.bz2#243f63592c8e449f40cd42eb5cf32f40
+https://conda.anaconda.org/conda-forge/noarch/kornia-0.6.4-pyhd8ed1ab_0.tar.bz2#72300009c95a70e2c13a45841d0b1737
 https://conda.anaconda.org/conda-forge/linux-64/libgdal-3.4.2-hb785293_6.tar.bz2#32e7620fb49a6c4974e57825df9dba74
 https://conda.anaconda.org/conda-forge/noarch/marshmallow-oneofschema-3.0.1-pyhd8ed1ab_0.tar.bz2#4feef1f2c0f93b72161bb6c838813b30
 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.5.1-py39h2fa2bec_0.tar.bz2#739c2c88c887da02e6f4b438bf258936
@@ -479,6 +483,8 @@ https://conda.anaconda.org/conda-forge/noarch/sparse-0.13.0-pyhd8ed1ab_0.tar.bz2
 https://conda.anaconda.org/conda-forge/noarch/starlette-0.17.1-pyhd8ed1ab_0.tar.bz2#9101f4d582cc8e31154dfd09be92bd98
 https://conda.anaconda.org/conda-forge/noarch/tifffile-2022.4.26-pyhd8ed1ab_0.tar.bz2#1f11b20c9bf2909cc6500b7c34748ee6
 https://conda.anaconda.org/conda-forge/noarch/timezonefinder-5.2.0-pyh050c7b8_0.tar.bz2#eba0fd68893bc1fa3200b5b32b911dfa
+https://conda.anaconda.org/conda-forge/noarch/torchmetrics-0.8.1-pyhd8ed1ab_0.tar.bz2#c224f8a6ff5a64990f32cf76430f90e4
+https://conda.anaconda.org/conda-forge/linux-64/torchvision-0.11.3-cuda112py39ha475c55_2.tar.bz2#b95cf499ff63f72d2f46eefa7f2f0b1f
 https://conda.anaconda.org/conda-forge/noarch/wcwidth-0.2.5-pyh9f0ad1d_2.tar.bz2#5266fcd697043c59621fda522b3d78ee
 https://conda.anaconda.org/conda-forge/noarch/xarray-2022.3.0-pyhd8ed1ab_0.tar.bz2#46e2d57d8ddb0ddef0f3abd516d7e99a
 https://conda.anaconda.org/conda-forge/noarch/zarr-2.11.3-pyhd8ed1ab_0.tar.bz2#4a66c633e7ada2550ad2a590a6189d05
@@ -498,6 +504,7 @@ https://conda.anaconda.org/conda-forge/noarch/nbstripout-0.5.0-pyhd8ed1ab_0.tar.
 https://conda.anaconda.org/conda-forge/noarch/nc-time-axis-1.4.1-pyhd8ed1ab_0.tar.bz2#281b58948bf60a2582de9e548bcc5369
 https://conda.anaconda.org/conda-forge/noarch/networkx-2.8-pyhd8ed1ab_0.tar.bz2#f23297b9fa680ba13f9fdfba58bb3064
 https://conda.anaconda.org/conda-forge/noarch/odc-geo-0.1.2-pyhd8ed1ab_0.tar.bz2#cabd16e0b0cec951621c2e40f189d496
+https://conda.anaconda.org/conda-forge/noarch/pretrainedmodels-0.7.4-pyhd8ed1ab_2.tar.bz2#ed1ffbcee86a6656baaf64dc830260bf
 https://conda.anaconda.org/conda-forge/noarch/prompt-toolkit-3.0.29-pyha770c72_0.tar.bz2#9e720b57b22ef3032b4fb081697819dd
 https://conda.anaconda.org/conda-forge/linux-64/pyarrow-7.0.0-py39h42d110c_4_cpu.tar.bz2#8bd2b5162c43a6c0177774d7aaf1c98d
 https://conda.anaconda.org/conda-forge/linux-64/pyqt-5.12.3-py39hf3d152e_8.tar.bz2#466425e3ee3b190e06b8a5a7098421aa
@@ -505,6 +512,7 @@ https://conda.anaconda.org/conda-forge/linux-64/python-eccodes-1.4.0-py39hd257fc
 https://conda.anaconda.org/conda-forge/linux-64/rasterio-1.2.10-py39h2e4b6e6_5.tar.bz2#80308822a5e95082d44842134c54b66c
 https://conda.anaconda.org/conda-forge/noarch/seaborn-base-0.11.2-pyhd8ed1ab_0.tar.bz2#fe2303dc8f1febeb82d927ce8ad153ed
 https://conda.anaconda.org/conda-forge/linux-64/statsmodels-0.13.2-py39hce5d2b2_0.tar.bz2#0d4a4a2f2e52548519a76262839494c9
+https://conda.anaconda.org/conda-forge/noarch/timm-0.4.12-pyhd8ed1ab_0.tar.bz2#a45727cf4b2f81b03daa16ce801f7d96
 https://conda.anaconda.org/conda-forge/noarch/urllib3-1.26.9-pyhd8ed1ab_0.tar.bz2#0ea179ee251aa7100807c35bc0252693
 https://conda.anaconda.org/conda-forge/noarch/botocore-1.24.21-pyhd8ed1ab_1.tar.bz2#436f2200e8fa2dc0ca508e05219402bb
 https://conda.anaconda.org/conda-forge/noarch/cfgrib-0.9.10.1-pyhd8ed1ab_0.tar.bz2#0d288535305ff4993ca6df984b61154c
@@ -521,6 +529,7 @@ https://conda.anaconda.org/conda-forge/noarch/requests-2.27.1-pyhd8ed1ab_0.tar.b
 https://conda.anaconda.org/conda-forge/noarch/rioxarray-0.11.1-pyhd8ed1ab_0.tar.bz2#f38cc4e99cc7bea91f1d926dcf785500
 https://conda.anaconda.org/conda-forge/linux-64/scikit-image-0.19.2-py39hde0f152_0.tar.bz2#200ceba1a31bf22629232285a550506f
 https://conda.anaconda.org/conda-forge/noarch/seaborn-0.11.2-hd8ed1ab_0.tar.bz2#e56b6a19f4b717eca7c68ad78196b075
+https://conda.anaconda.org/conda-forge/noarch/segmentation-models-pytorch-0.2.1-pyhd8ed1ab_0.tar.bz2#524e644d10fabeca16985e4343ed9940
 https://conda.anaconda.org/conda-forge/noarch/stackstac-0.4.1-pyhd8ed1ab_0.tar.bz2#325db66b405b8f63a3ad6f9c8382603b
 https://conda.anaconda.org/conda-forge/noarch/xesmf-0.6.2-pyhd8ed1ab_0.tar.bz2#410427ad7e5050ef576fda95cd3ad6e9
 https://conda.anaconda.org/conda-forge/noarch/adal-1.2.7-pyhd8ed1ab_0.tar.bz2#1a0f134d22bad81e93f1e130b35afb35
@@ -559,7 +568,7 @@ https://conda.anaconda.org/conda-forge/noarch/dask-glm-0.2.0-py_1.tar.bz2#7c9c52
 https://conda.anaconda.org/conda-forge/noarch/gcm_filters-0.2.3-pyhd8ed1ab_0.tar.bz2#0f00cd075f032e01c8b81f348f59ac9e
 https://conda.anaconda.org/conda-forge/noarch/geopandas-0.10.2-pyhd8ed1ab_1.tar.bz2#0682614964c1319304cfa554cbce90f0
 https://conda.anaconda.org/conda-forge/noarch/google-api-core-2.5.0-pyhd8ed1ab_0.tar.bz2#70c3b200b64a5f1cc39c94647dfb0c0b
-https://conda.anaconda.org/conda-forge/noarch/google-auth-oauthlib-0.5.1-pyhd8ed1ab_0.tar.bz2#d2ccbb5da1dcf713f5d7539a4d266928
+https://conda.anaconda.org/conda-forge/noarch/google-auth-oauthlib-0.4.6-pyhd8ed1ab_0.tar.bz2#430db61bdfa0b37903ef73d84bcea2c9
 https://conda.anaconda.org/conda-forge/noarch/intake-0.6.5-pyhd8ed1ab_0.tar.bz2#9b4be120fd2545abd086bfefda0fa0f6
 https://conda.anaconda.org/conda-forge/noarch/jupyter-resource-usage-0.6.1-pyhd8ed1ab_0.tar.bz2#a35cb988cd5b9b9b2d1c6179a8a86974
 https://conda.anaconda.org/conda-forge/noarch/jupyter-server-proxy-3.2.1-pyhd8ed1ab_0.tar.bz2#8fdfe5edf206bbfef250c830b5a72aff
@@ -600,6 +609,7 @@ https://conda.anaconda.org/conda-forge/noarch/intake-xarray-0.6.0-pyhd8ed1ab_0.t
 https://conda.anaconda.org/conda-forge/noarch/jupyter-panel-proxy-0.1.0-py_0.tar.bz2#80c21feab6100e287707c371c752adea
 https://conda.anaconda.org/conda-forge/noarch/notebook-6.4.11-pyha770c72_0.tar.bz2#da25720a88aa3cbb3e16df740783da74
 https://conda.anaconda.org/conda-forge/noarch/satpy-0.36.0-pyhd8ed1ab_0.tar.bz2#33219d79dce152dc6db8501c7c8bc83c
+https://conda.anaconda.org/conda-forge/noarch/tensorboard-2.8.0-pyhd8ed1ab_1.tar.bz2#fc86861452a280db19d13feabe5220d9
 https://conda.anaconda.org/conda-forge/noarch/xskillscore-0.0.24-pyhd8ed1ab_0.tar.bz2#facc58b60c63642243013e12236e3ea7
 https://conda.anaconda.org/conda-forge/noarch/adlfs-2022.4.0-pyhd8ed1ab_0.tar.bz2#62bdd2bb3fa8091d4b8d7023d89d47ae
 https://conda.anaconda.org/conda-forge/noarch/geoviews-core-1.9.5-pyha770c72_0.tar.bz2#8bd65a48d838db0a95c3ca14728c3fb5
@@ -609,11 +619,13 @@ https://conda.anaconda.org/conda-forge/noarch/intake-stac-0.3.0-py_0.tar.bz2#428
 https://conda.anaconda.org/conda-forge/noarch/nbclassic-0.3.7-pyhd8ed1ab_0.tar.bz2#a8a7139140a7512c90514444444a4991
 https://conda.anaconda.org/conda-forge/noarch/nbgitpuller-1.1.0-pyhd8ed1ab_0.tar.bz2#7939a867db173d59e8f72d860678eb37
 https://conda.anaconda.org/conda-forge/noarch/pangeo-dask-2022.04.18-hd8ed1ab_0.tar.bz2#13ec5446ed3b3d11b47a90f412d6cba1
+https://conda.anaconda.org/conda-forge/noarch/pytorch-lightning-1.6.1-pyhd8ed1ab_0.tar.bz2#8b0db39bf02ea2d9926698b9958199ad
 https://conda.anaconda.org/conda-forge/linux-64/widgetsnbextension-3.6.0-py39hf3d152e_0.tar.bz2#eb9f42c0ef3263a1d7bad8b0deb446f5
 https://conda.anaconda.org/conda-forge/noarch/xarray-spatial-0.3.3-pyhd8ed1ab_0.tar.bz2#b1634091a29965315721908f460eb487
 https://conda.anaconda.org/conda-forge/noarch/gcsfs-2022.3.0-pyhd8ed1ab_0.tar.bz2#96926548d0dc37cc4f7adf74bfc127ef
 https://conda.anaconda.org/conda-forge/noarch/ipywidgets-7.7.0-pyhd8ed1ab_0.tar.bz2#a3d2ccd3d9f9fcb65765c22f500529b4
 https://conda.anaconda.org/conda-forge/noarch/jupyterlab-3.3.4-pyhd8ed1ab_0.tar.bz2#bb59182858cf3e548c2811183afd071c
+https://conda.anaconda.org/conda-forge/noarch/torchgeo-0.2.0-pyhd8ed1ab_0.tar.bz2#9d59db92bab97c151621545a72f47ef5
 https://conda.anaconda.org/conda-forge/noarch/dask-labextension-5.2.0-pyhd8ed1ab_0.tar.bz2#19afa0e936d64003215905c2c500a070
 https://conda.anaconda.org/conda-forge/noarch/ipyleaflet-0.16.0-pyhd8ed1ab_3.tar.bz2#e6d0d4beafb1e9ab272babf1a34e6846
 https://conda.anaconda.org/conda-forge/noarch/ipyspin-0.1.5-pyhd8ed1ab_0.tar.bz2#5601ec318074faef9b482cfa6a1a8b4e
diff --git a/pytorch-notebook/environment.yml b/pytorch-notebook/environment.yml
index 70f574c9..ba3b1bab 100644
--- a/pytorch-notebook/environment.yml
+++ b/pytorch-notebook/environment.yml
@@ -9,3 +9,4 @@ dependencies:
  # https://github.com/NVIDIA/MinkowskiEngine/issues/354#issuecomment-880555195
  - anaconda::libopenblas
  - pytorch-gpu
+ - torchgeo
diff --git a/pytorch-notebook/packages.txt b/pytorch-notebook/packages.txt
index ffe61479..01a9300d 100644
--- a/pytorch-notebook/packages.txt
+++ b/pytorch-notebook/packages.txt
@@ -3,6 +3,7 @@
 _libgcc_mutex==0.1
 _openmp_mutex==4.5
 abseil-cpp==20210324.2
+absl-py==1.0.0
 adal==1.2.7
 adlfs==2022.4.0
 affine==2.3.1
@@ -12,6 +13,7 @@ aioitertools==0.10.0
 aiosignal==1.2.0
 alembic==1.7.7
 alsa-lib==1.2.3
+antlr-python-runtime==4.9.3
 anyio==3.5.0
 aom==3.3.0
 appdirs==1.4.4
@@ -28,7 +30,7 @@ async-timeout==4.0.2
 async_generator==1.10
 atk-1.0==2.36.0
 attrs==21.4.0
-av==9.2.0
+av==9.1.0
 aws-c-cal==0.5.11
 aws-c-common==0.6.2
 aws-c-event-stream==0.2.7
@@ -120,6 +122,8 @@ docutils==0.15.2
 donfig==0.7.0
 earthdata==0.2.2
 eccodes==2.25.0
+efficientnet-pytorch==0.6.3
+einops==0.4.1
 entrypoints==0.4
 eofs==1.4.0
 erddapy==1.2.1
@@ -131,7 +135,7 @@ fastapi==0.75.2
 fasteners==0.17.3
 fastjmd95==0.2.1
 fastprogress==1.0.2
-ffmpeg==4.4.1
+ffmpeg==4.3.2
 findlibs==0.0.2
 fiona==1.8.21
 flit-core==3.7.1
@@ -176,7 +180,7 @@ gmp==6.2.1
 gnutls==3.6.13
 google-api-core==2.5.0
 google-auth==2.6.6
-google-auth-oauthlib==0.5.1
+google-auth-oauthlib==0.4.6
 google-cloud-core==2.2.2
 google-cloud-storage==2.1.0
 google-crc32c==1.1.2
@@ -253,6 +257,7 @@ kerchunk==0.0.6
 kernel-headers_linux-64==2.6.32
 keyutils==1.6.1
 kiwisolver==1.4.2
+kornia==0.6.4
 krb5==1.19.3
 kubernetes_asyncio==22.6.4
 lame==3.100
@@ -271,7 +276,6 @@ libcrc32c==1.1.2
 libcurl==7.83.0
 libdap4==3.20.6
 libdeflate==1.10
-libdrm==2.4.109
 libedit==3.1.20191231
 libev==4.33
 libevent==2.1.10
@@ -297,7 +301,6 @@ libnsl==2.0.0
 libogg==1.3.4
 libopenblas==0.3.20
 libopus==1.3.1
-libpciaccess==0.16
 libpng==1.6.37
 libpq==14.2
 libprotobuf==3.19.4
@@ -314,9 +317,7 @@ libtiff==4.3.0
 libtool==2.4.6
 libutf8proc==2.7.0
 libuuid==2.32.1
-libva==2.14.0
 libvorbis==1.3.7
-libvpx==1.11.0
 libwebp==1.2.2
 libwebp-base==1.2.2
 libxcb==1.13
@@ -391,6 +392,7 @@ numcodecs==0.9.1
 numpy==1.22.3
 oauthlib==3.2.0
 odc-geo==0.1.2
+omegaconf==2.1.2
 openh264==2.1.1
 openjpeg==2.4.0
 openssl==1.1.1n
@@ -427,6 +429,7 @@ portalocker==2.4.0
 postgresql==14.2
 pqdm==0.1.0
 prefect==1.2.0
+pretrainedmodels==0.7.4
 progressbar2==4.0.0
 proj==9.0.0
 prometheus_client==0.14.1
@@ -448,6 +451,7 @@ pyct-core==0.4.6
 pycurl==7.45.1
 pydantic==1.9.0
 pydap==3.3.0
+pydeprecate==0.3.2
 pyerfa==2.0.0.1
 pygeos==0.12.0
 pygments==2.12.0
@@ -492,6 +496,7 @@ python_abi==3.9
 pytools==2022.1.5
 pytorch==1.10.2
 pytorch-gpu==1.10.2
+pytorch-lightning==1.6.1
 pytz==2022.1
 pytzdata==2020.1
 pyu2f==0.1.5
@@ -522,6 +527,7 @@ scikit-learn==1.0.2
 scipy==1.8.0
 seaborn==0.11.2
 seaborn-base==0.11.2
+segmentation-models-pytorch==0.2.1
 send2trash==1.8.0
 setuptools==59.5.0
 shapely==1.8.0
@@ -540,10 +546,12 @@ stack_data==0.2.0
 stackstac==0.4.1
 starlette==0.17.1
 statsmodels==0.13.2
-svt-av1==0.9.1
 sysroot_linux-64==2.12
 tabulate==0.8.9
 tblib==1.7.0
+tensorboard==2.8.0
+tensorboard-data-server==0.6.0
+tensorboard-plugin-wit==1.8.1
 terminado==0.13.3
 text-unidecode==1.3
 threadpoolctl==3.1.0
@@ -551,11 +559,15 @@ tifffile==2022.4.26
 tiledb==2.8.1
 tiledb-py==0.14.1
 timezonefinder==5.2.0
+timm==0.4.12
 tinycss2==1.1.1
 tk==8.6.12
 toml==0.10.2
 tomli==2.0.1
 toolz==0.11.2
+torchgeo==0.2.0
+torchmetrics==0.8.1
+torchvision==0.11.3
 tornado==6.1
 tqdm==4.64.0
 traitlets==5.1.1
@@ -575,11 +587,11 @@ wcwidth==0.2.5
 webencodings==0.5.1
 webob==1.8.7
 websocket-client==1.3.2
+werkzeug==2.1.1
 wheel==0.37.1
 widgetsnbextension==3.6.0
 wrapt==1.14.0
 x264==1!161.3030
-x265==3.5
 xarray==2022.3.0
 xarray-spatial==0.3.3
 xarray_leaflet==0.1.15

From ebb31599afee0f5f4abe79f3713e0e47d3b080a3 Mon Sep 17 00:00:00 2001
From: Wei Ji <23487320+weiji14@users.noreply.github.com>
Date: Wed, 27 Apr 2022 16:19:19 -0400
Subject: [PATCH 5/8] Test importing more torch related packages

---
 tests/test_pytorch-notebook.py | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/tests/test_pytorch-notebook.py b/tests/test_pytorch-notebook.py
index 939c538f..e3dd003e 100644
--- a/tests/test_pytorch-notebook.py
+++ b/tests/test_pytorch-notebook.py
@@ -5,13 +5,13 @@
 
 packages = [
     # machine learning stuff
-    "pytorch",
+    "pytorch_lightning",
     "skimage",
     "sklearn",
+    "torch",
+    "torchgeo",
     # cupy import fails unless on GPU-enabled node:
     #'cupy', #libcuda.so.1: cannot open shared object file: No such file or directory
-    # Error w/conda solve of pytorch+tensorflow, so not currently installed
-    # 'torch'
 ]
 
 

From 377f29efda787da64d51abbcdc8fcc4e25913247 Mon Sep 17 00:00:00 2001
From: Scott Henderson <scottyhq@gmail.com>
Date: Wed, 27 Apr 2022 15:14:32 -0700
Subject: [PATCH 6/8] Update README.md

Co-authored-by: Wei Ji <23487320+weiji14@users.noreply.github.com>
---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index de31eb78..244f9721 100644
--- a/README.md
+++ b/README.md
@@ -12,9 +12,9 @@ Image are hosted on DockerHub: https://hub.docker.com/u/pangeo
 |-----------------|-----------------------------------------------|--------------|-------------|
 | base-image      | Foundational Dockerfile for builds            | ![](https://img.shields.io/docker/image-size/pangeo/base-image?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/base-image?sort=date)
 | [base-notebook](base-notebook/packages.txt) | minimally functional image for pangeo hubs | ![](https://img.shields.io/docker/image-size/pangeo/base-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/base-notebook?sort=date)
-| [pangeo-notebook](pangeo-notebook/packages.txt) | above + core earth science analysis packages | ![](https://img.shields.io/docker/image-size/pangeo/pangeo-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/pangeo-notebook?sort=date)
-| [pytorch-notebook](pytorch-notebook/packages.txt) | above + GPU-enabled pytorch | ![](https://img.shields.io/docker/image-size/pangeo/pytorch-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/pytorch-notebook?sort=date)
-| [ml-notebook](ml-notebook/packages.txt) | above + GPU-enabled tensorflow2 | ![](https://img.shields.io/docker/image-size/pangeo/ml-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/ml-notebook?sort=date)
+| [pangeo-notebook](pangeo-notebook/packages.txt) | base-notebook + core earth science analysis packages | ![](https://img.shields.io/docker/image-size/pangeo/pangeo-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/pangeo-notebook?sort=date)
+| [pytorch-notebook](pytorch-notebook/packages.txt) | pangeo-notebook + GPU-enabled pytorch | ![](https://img.shields.io/docker/image-size/pangeo/pytorch-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/pytorch-notebook?sort=date)
+| [ml-notebook](ml-notebook/packages.txt) | pangeo-notebook + GPU-enabled tensorflow2 | ![](https://img.shields.io/docker/image-size/pangeo/ml-notebook?sort=date) | ![](https://img.shields.io/docker/pulls/pangeo/ml-notebook?sort=date)
 
 *Click on the image name in the table above for a current list of installed packages and versions*
 

From fdf6c8c07eebc7563cf2a677b2d2b206376220ab Mon Sep 17 00:00:00 2001
From: Wei Ji <23487320+weiji14@users.noreply.github.com>
Date: Wed, 27 Apr 2022 18:22:15 -0400
Subject: [PATCH 7/8] Add mermaid diagram for docker image links

---
 README.md | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/README.md b/README.md
index 244f9721..d3dcb011 100644
--- a/README.md
+++ b/README.md
@@ -18,6 +18,14 @@ Image are hosted on DockerHub: https://hub.docker.com/u/pangeo
 
 *Click on the image name in the table above for a current list of installed packages and versions*
 
+```mermaid
+graph TD;
+    base-image-->base-notebook;
+    base-notebook-->pangeo-notebook;
+    pangeo-notebook-->pytorch-notebook;
+    pangeo-notebook-->ml-notebook;
+```
+
 ### How to use the pangeo-notebook image with Binder
 A major use-case for these images is running an ephemeral server on the Cloud with BinderHub. Anyone can launch a server running the latest-and-greatest `pangeo-notebook` image with the following URL
 

From 3acef32a4f614726a502068446bd6c93e891dfb9 Mon Sep 17 00:00:00 2001
From: Wei Ji <23487320+weiji14@users.noreply.github.com>
Date: Wed, 27 Apr 2022 19:10:26 -0400
Subject: [PATCH 8/8] Ensure torch uses mkl, and remove redundant lines

---
 tests/test_pytorch-notebook.py | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

diff --git a/tests/test_pytorch-notebook.py b/tests/test_pytorch-notebook.py
index e3dd003e..50536447 100644
--- a/tests/test_pytorch-notebook.py
+++ b/tests/test_pytorch-notebook.py
@@ -10,8 +10,6 @@
     "sklearn",
     "torch",
     "torchgeo",
-    # cupy import fails unless on GPU-enabled node:
-    #'cupy', #libcuda.so.1: cannot open shared object file: No such file or directory
 ]
 
 
@@ -24,3 +22,11 @@ def test_start():
     print(os.environ)
     if os.environ.get("PANGEO_ENV") is not None:
         assert os.environ["PANGEO_ENV"] == "pytorch-notebook"
+
+
+def test_torch_uses_mkl():
+
+    import torch
+
+    blas_info_index = torch.__config__.show().find("BLAS_INFO")
+    assert torch.__config__.show()[blas_info_index + 10 : blas_info_index + 13] == "mkl"