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main.yaml
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name: main
on:
push:
branches: [main]
pull_request:
branches: [main]
jobs:
check-branch:
if: ${{ github.event_name == 'pull_request' }}
runs-on: ubuntu-latest
timeout-minutes: 10
concurrency:
group: check-pr-${{ github.ref }}
cancel-in-progress: true
steps:
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Check if the PR's branch is updated
uses: osl-incubator/[email protected]
with:
remote_branch: origin/main
pr_sha: ${{ github.event.pull_request.head.sha }}
tests:
needs: check-branch
timeout-minutes: 10
strategy:
matrix:
python_version:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
os:
- "ubuntu"
- "macos"
runs-on: ${{ matrix.os }}-latest
concurrency:
group: ci-tests-${{ matrix.os }}-${{ matrix.python_version }}-${{ github.ref }}
cancel-in-progress: true
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v3
<<<<<<< HEAD
- name: Install MacOS extra tools and add extra setup
if: ${{ matrix.os == 'macos' }}
run: |
sudo mkdir -p /tmp
sudo chmod 777 /tmp
brew install gnu-sed
echo 'export PATH="/usr/local/opt/gnu-sed/libexec/gnubin:$PATH"' >> ~/.bashrc
echo 'export PATH="/usr/local/opt/gnu-sed/libexec/gnubin:$PATH"' >> ~/.bash_profile
- name: Prepare conda environment (windows)
if: ${{ matrix.os == 'windows' }}
run: |
$env:Path += ";C:\Program Files\Git\usr\bin"
sed -i s/python\ 3\.8/python\ ${{ matrix.python_version }}/ conda/dev.yaml
cat conda/dev.yaml
- name: Prepare conda environment
if: ${{ matrix.os != 'windows' }}
run: |
sed -i s/python\ 3\.8/python\ ${{ matrix.python_version }}/ conda/dev.yaml
cat conda/dev.yaml
=======
>>>>>>> upstream/main
- uses: conda-incubator/setup-miniconda@v3
with:
miniconda-version: "latest"
environment-file: conda/dev.yaml
channels: conda-forge,nodefaults
activate-environment: anamnesisai
auto-update-conda: true
conda-solver: libmamba
python-version: "${{ matrix.python_version }}"
- name: Install dependencies
run: poetry install
- name: Run unit tests
run: makim tests.unittest
- name: Test jupyter notebooks
run: makim tests.notebooks
linter-and-docs:
needs: check-branch
runs-on: ubuntu-latest
timeout-minutes: 10
defaults:
run:
shell: bash -l {0}
concurrency:
group: ci-linter-docs-${{ matrix.os }}-${{ matrix.python_version }}-${{ github.ref }}
cancel-in-progress: true
steps:
- uses: actions/checkout@v3
- uses: conda-incubator/setup-miniconda@v3
with:
miniconda-version: "latest"
environment-file: conda/dev.yaml
channels: conda-forge,nodefaults
activate-environment: anamnesisai
auto-update-conda: true
conda-solver: libmamba
python-version: "3.8"
- name: Install dependencies
run: |
poetry config virtualenvs.create false
poetry install
- name: Test documentation generation
run: makim docs.build
- name: Run style checks
if: success() || failure()
run: |
pre-commit install
makim tests.linter
- name: Setup tmate session
if: "${{ failure() && (contains(github.event.pull_request.labels.*.name, 'ci:enable-debugging')) }}"
uses: mxschmitt/action-tmate@v3