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@vib-singlecell-nf VIB-SingleCell-NF

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    31 repositories

    • vsn-pipelines

      Public archive
      A repository of pipelines for single-cell data in Nextflow DSL2
      Nextflow
      •
      GNU General Public License v3.0
      •32•75•62•13•Updated Apr 19, 2023Apr 19, 2023

    • vsn-pipelines-examples

      Public
      Configs and results for example data
      GNU General Public License v3.0
      •0•4•0•0•Updated Aug 25, 2021Aug 25, 2021

    • template

      Public template
      A template repository for adding new tools to VIB-SingleCell-NF
      Nextflow
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Jan 19, 2021Jan 19, 2021

    • trimgalore

      Public archive
      A repository for the Trim Galore module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • star

      Public archive
      A repository for the star module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • sratoolkit

      Public archive
      A repository for the sratoolkit module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • soupx

      Public archive
      A repository for the soupx module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • sinto

      Public archive
      A repository for the Sinto module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • singlecelltoolkit

      Public archive
      A repository for the single_cell_toolkit module of the vib-singlecell-nf pipeline
      Dockerfile
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • scrublet

      Public archive
      A repository for the scrublet module of the vib-singlecell-nf pipeline
      Nextflow
      •1•1•0•0•Updated Dec 8, 2020Dec 8, 2020

    • scenic

      Public archive
      A repository for the scenic module of the vib-singlecell-nf pipeline
      Python
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • scanpy

      Public archive
      A repository for the scanpy module of the vib-singlecell-nf pipeline
      Nextflow
      •0•3•0•0•Updated Dec 8, 2020Dec 8, 2020

    • pycistopic

      Public archive
      A repository for the pycisTopic module of the vib-singlecell-nf pipeline
      Python
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • popscle

      Public archive
      A repository for the popscle module of the vib-singlecell-nf pipeline
      Nextflow
      •1•1•0•0•Updated Dec 8, 2020Dec 8, 2020

    • picard

      Public archive
      A repository for the picard module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • pcacv

      Public archive
      A repository for the pcacv module of the vib-singlecell-nf pipeline
      R
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • harmony

      Public archive
      A repository for the harmony module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • flybaser

      Public archive
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • fastp

      Public archive
      A repository for the fastp module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • edirect

      Public archive
      A repository for the edirect module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • dropseqtools

      Public archive
      A repository for the dropseqtools module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • dropletutils

      Public archive
      A repository for the dropletutils module of the vib-singlecell-nf pipeline
      R
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • directs

      Public archive
      Python
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • cellranger-atac

      Public archive
      A repository for the cellranger-atac module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • cellranger

      Public archive
      A repository for the cellranger module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • celda

      Public archive
      A repository for the celda module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • bwamaptools

      Public archive
      A repository for the bwa mapping module of the vib-singlecell-nf pipeline
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • bap

      Public archive
      A repository for the BAP module of the vib-singlecell-nf pipeline
      Nextflow
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • archr

      Public archive
      A repository for the ArchR module of the vib-singlecell-nf pipeline
      R
      •0•0•0•0•Updated Dec 8, 2020Dec 8, 2020

    • snaptools

      Public
      A repository for the SnapTools module of the vib-singlecell-nf pipeline
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 29, 2020Oct 29, 2020