Open Problems in Single-Cell Analysis

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30 packages

spatial_decomposition/methods/vanillanmf
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/vanillanmf

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predict_modality/methods/simplemlp_train
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/methods/simplemlp_train

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batch_integration/methods/scanorama_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scanorama_feature

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dimensionality_reduction/methods/tsne
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/tsne

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predict_modality/methods/simplemlp_predict
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/methods/simplemlp_predict

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spatially_variable_genes/methods/gpcounts
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/gpcounts

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predict_modality/control_methods/zeros
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/control_methods/zeros

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spatially_variable_genes/methods/spatialde2
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spatialde2

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spatially_variable_genes/methods/spagcn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spagcn

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dimensionality_reduction/methods/neuralee
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/neuralee

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batch_integration/methods/scalex_embed
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scalex_embed

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dimensionality_reduction/methods/pymde
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/pymde

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batch_integration/methods/scvi
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/scvi

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label_projection/methods/scanvi
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/label_projection/methods/scanvi

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match_modalities/methods/scot
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/match_modalities/methods/scot

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spatial_decomposition/methods/stereoscope
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/stereoscope

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datasets/loaders/openproblems_v1_multimodal
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/openproblems_v1_multimodal

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datasets/loaders/openproblems_v1
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/openproblems_v1

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common/sync_test_resources
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/sync_test_resources

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datasets/loaders/cellxgene_census_from_source_h5ad
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/cellxgene_census_from_source_h5ad

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datasets/loaders/openproblems_neurips2022_pbmc
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/openproblems_neurips2022_pbmc

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datasets/loaders/openproblems_neurips2021_bmmc
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/openproblems_neurips2021_bmmc

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common/check_yaml_schema
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/check_yaml_schema

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datasets/loaders/zenodo_spatial
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/zenodo_spatial

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datasets/loaders/cellxgene_census
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/cellxgene_census

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common/process_task_results/yaml_to_json
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/process_task_results/yaml_to_json

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datasets/loaders/tenx_visium
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/tenx_visium

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datasets/loaders/zenodo_spatial_slidetags
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/datasets/loaders/zenodo_spatial_slidetags

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common/decompress_gzip
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/common/decompress_gzip

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project/fetch_run_work_dir
Published Oct 31, 2024 by Open Problems in Single-Cell Analysis in openproblems/project/fetch_run_work_dir

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