Open Problems in Single-Cell Analysis

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30 packages

batch_integration/metrics/cell_cycle_conservation
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/cell_cycle_conservation

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batch_integration/metrics/asw_batch
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/asw_batch

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batch_integration/control_methods/no_integration/batch_embed
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/no_integration/batch_embed

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batch_integration/metrics/asw_label
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/asw_label

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spatially_variable_genes/methods/boostgp
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/boostgp

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spatial_decomposition/methods/cell2location
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/cell2location

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match_modalities/control_methods/true_features
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/match_modalities/control_methods/true_features

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spatial_decomposition/methods/destvi
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/destvi

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label_projection/control_methods/true_labels
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/label_projection/control_methods/true_labels

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dimensionality_reduction/methods/umap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/umap

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spatial_decomposition/control_methods/random_proportions
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/control_methods/random_proportions

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spatially_variable_genes/process_dataset/split_dataset
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/process_dataset/split_dataset

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spatially_variable_genes/methods/spark
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spark

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spatially_variable_genes/methods/spagft
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatially_variable_genes/methods/spagft

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dimensionality_reduction/metrics/trustworthiness
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/metrics/trustworthiness

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predict_modality/process_dataset
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/process_dataset

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predict_modality/control_methods/solution
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/predict_modality/control_methods/solution

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label_projection/metrics/f1
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/label_projection/metrics/f1

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dimensionality_reduction/methods/diffusion_map
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/dimensionality_reduction/methods/diffusion_map

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batch_integration/transformers/feature_to_embed
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/transformers/feature_to_embed

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spatial_decomposition/dataset_simulator
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/dataset_simulator

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batch_integration/control_methods/no_integration/global_embed
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/no_integration/global_embed

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batch_integration/control_methods/random_integration/global_feature
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/control_methods/random_integration/global_feature

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batch_integration/metrics/graph_connectivity
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/graph_connectivity

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spatial_decomposition/methods/nnls
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/spatial_decomposition/methods/nnls

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match_modalities/methods/harmonic_alignment
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/match_modalities/methods/harmonic_alignment

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match_modalities/methods/fastmnn
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/match_modalities/methods/fastmnn

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batch_integration/metrics/isolated_label_f1
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/isolated_label_f1

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batch_integration/methods/fastmnn_embedding
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/methods/fastmnn_embedding

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batch_integration/metrics/hvg_overlap
Published Sep 7, 2024 by Open Problems in Single-Cell Analysis in openproblems/batch_integration/metrics/hvg_overlap

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