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    • fiji

      Public
      A "batteries-included" distribution of ImageJ 🔋
      Shell
      GNU General Public License v3.0
      2387761093Updated Nov 26, 2024Nov 26, 2024
    • dotfiles

      Public
      Configuration files for Fiji resources
      0000Updated Nov 13, 2024Nov 13, 2024
    • HDF5 plugin for ImageJ and Fiji.
      Java
      GNU General Public License v2.0
      91184Updated Nov 5, 2024Nov 5, 2024
    • 3D_Viewer

      Public
      Java
      GNU General Public License v3.0
      1820202Updated Oct 17, 2024Oct 17, 2024
    • Java
      GNU General Public License v3.0
      4200Updated Sep 28, 2024Sep 28, 2024
    • VIB

      Public
      Java
      GNU General Public License v3.0
      331450Updated Sep 28, 2024Sep 28, 2024
    • Fiji library to perform image segmentation based on the Weka learning schemes
      Java
      GNU General Public License v3.0
      61112271Updated Sep 28, 2024Sep 28, 2024
    • Java
      1100Updated Sep 28, 2024Sep 28, 2024
    • Python
      GNU General Public License v3.0
      2530Updated Sep 28, 2024Sep 28, 2024
    • Java
      GNU General Public License v3.0
      1200Updated Sep 28, 2024Sep 28, 2024
    • Java
      GNU General Public License v2.0
      2223371Updated Aug 29, 2024Aug 29, 2024
    • Fiji's plugin for colocalization analysis
      Java
      GNU General Public License v3.0
      1726250Updated Aug 27, 2024Aug 27, 2024
    • Java
      GNU General Public License v3.0
      6400Updated Aug 14, 2024Aug 14, 2024
    • Fiji's original script interpreter plugins
      Java
      GNU General Public License v3.0
      0000Updated Apr 30, 2024Apr 30, 2024
    • Read, write, type convert images using simple methods.
      Java
      GNU General Public License v3.0
      4300Updated Apr 25, 2024Apr 25, 2024
    • View5D

      Public archive
      Java
      GNU General Public License v2.0
      1200Updated Mar 15, 2024Mar 15, 2024
    • Image_5D

      Public
      A plugin to extend image stacks to 5 dimensions: x, y, channel (color), slice (z), frame (t).
      Java
      Other
      1211Updated Feb 22, 2024Feb 22, 2024
    • IO

      Public
      Java
      GNU General Public License v3.0
      24662Updated Feb 21, 2024Feb 21, 2024
    • Fiji Dockerfiles for Docker builds.
      Dockerfile
      98130Updated Jan 9, 2024Jan 9, 2024
    • Java
      1101Updated Dec 17, 2023Dec 17, 2023
    • Java
      GNU General Public License v3.0
      3000Updated Nov 13, 2023Nov 13, 2023
    • Stitching

      Public
      Fiji's Stitching plugins reconstruct big images from tiled input images.
      Java
      GNU General Public License v2.0
      6497343Updated Sep 12, 2023Sep 12, 2023
    • Fiji website
      HTML
      113510Updated Aug 14, 2023Aug 14, 2023
    • Java
      GNU General Public License v3.0
      3600Updated Jul 27, 2023Jul 27, 2023
    • learnathon-2017

      Public archive
      Collection of tutorial repositories for 2017 DAIS learnathon
      Shell
      1000Updated May 4, 2023May 4, 2023
    • learnathon-2019

      Public archive
      Collection of material for the 2019 Learnathon
      Java
      2200Updated May 4, 2023May 4, 2023
    • Java
      GNU General Public License v3.0
      4310Updated Apr 12, 2023Apr 12, 2023
    • Java
      GNU General Public License v3.0
      5131Updated Mar 26, 2023Mar 26, 2023
    • Java
      GNU General Public License v2.0
      91210Updated Mar 11, 2023Mar 11, 2023
    • CPU_Meter

      Public
      Java
      GNU General Public License v3.0
      1000Updated Mar 9, 2023Mar 9, 2023