Repositories list

• dockstore

  Public
  An app store for scientific workflows, tools, notebooks, and services

  dockerworkflowbioinformatics+ 5nextflowcontainerswdlcwldockstore

  Java

  •

  Apache License 2.0

  •28•121•512•6•Updated Dec 12, 2024Dec 12, 2024

• dockstore-ui2

  Public
  Website user interface for Dockstore in Angular2

  angularnextflowwdl+ 3cwlhacktoberfestdockstore

  TypeScript

  •

  Apache License 2.0

  •16•16•1•7•Updated Dec 11, 2024Dec 11, 2024

• dockstore-cli

  Public
  Command-line interface to dockstore, split out from main repo in version 1.8.0

  Java

  •

  Apache License 2.0

  •4•4•0•0•Updated Dec 11, 2024Dec 11, 2024

• lambda

  Public
  Till we find a better solution, backup and document AWS lambdas

  awslambdadockstore

  JavaScript

  •

  Apache License 2.0

  •2•1•0•2•Updated Dec 11, 2024Dec 11, 2024

• compose_setup

  Public
  Demonstrate how to setup and run Dockstore using composed containers

  dockerdocker-compose

  Shell

  •

  Apache License 2.0

  •2•1•0•0•Updated Dec 9, 2024Dec 9, 2024

• dockstore-documentation

  Public
  The documentation for Dockstore.org

  workflownextflowtool+ 4wdlcwlhacktoberfestdockstore

  Shell

  •

  Apache License 2.0

  •8•2•0•0•Updated Dec 5, 2024Dec 5, 2024

• dockstore-support

  Public
  A collection of different projects supporting the dockstore initiative

  Java

  •

  Apache License 2.0

  •1•1•0•0•Updated Dec 4, 2024Dec 4, 2024

• workflow-actions

  Public
  Resuable github actions (unfortunately called workflows)

  Apache License 2.0

  •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• extra-content

  Public
  A repo for external content, such as featured content

  hacktoberfest

  HTML

  •

  Apache License 2.0

  •2•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• swagger-java-zenodo-client

  Public
  swagger-java-zenodo-client

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• tool-registry-service-schemas

  Public
  APIs for discovering genomics tools, their metadata and their containers

  Shell

  •

  Apache License 2.0

  •18•0•0•7•Updated Nov 6, 2024Nov 6, 2024

• cwlavro

  Public
  Auto-generated Avro classes for manipulating CWL (starting with Java). Works with v1.0

  Java

  •

  Apache License 2.0

  •3•6•0•0•Updated Nov 5, 2024Nov 5, 2024

• ng2-ui-auth

  Public
  an angular2 repository for authentication based on angular1's satellizer

  TypeScript

  •

  MIT License

  •64•0•0•5•Updated Sep 23, 2024Sep 23, 2024

• icgc-storage-client-plugin

  Public archive
  icgc storage client file provisioning plugin

  javaicgcdockstore+ 1file-provisioning

  Java

  •

  Apache License 2.0

  •1•0•1•0•Updated Aug 12, 2024Aug 12, 2024

• bcc2020-training

  Public
  Training materials for our BCC 2020 training workshop.

  dockernextflowwdl+ 5cwlhacktoberfestdockstorebccbosc

  Common Workflow Language

  •5•2•0•0•Updated Aug 9, 2024Aug 9, 2024

• example-notebook

  Public
  This repository contains a simple notebook example from Jupyter for running code.

  Jupyter Notebook

  •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

• dockstore-load-tester

  Public
  Dockstore Load/Performance/Stress Tester

  Scala

  •

  Apache License 2.0

  •0•3•0•1•Updated Mar 8, 2024Mar 8, 2024

• dockstore-trs-notebook

  Public
  This repository contains a notebook demonstrating how to use TRS.

  Jupyter Notebook

  •0•0•0•0•Updated Feb 8, 2024Feb 8, 2024

• .github

  Public
  default community health files

  Apache License 2.0

  •1•0•0•0•Updated Feb 1, 2024Feb 1, 2024

• maintenance-downtime-content

  Public
  HTML

  •

  Apache License 2.0

  •0•0•1•0•Updated Jan 12, 2024Jan 12, 2024

• hubflow

  Public
  A copy of hubflow for safe-keeping

  Shell

  •

  Other

  •0•0•0•0•Updated Jan 10, 2024Jan 10, 2024

• zenodo-client

  Public archive
  A generated client for zenodo using a swagger (soon be openAPI) description

  javaswaggerzenodo+ 1dockstore

  Java

  •

  Apache License 2.0

  •1•0•0•1•Updated Dec 13, 2023Dec 13, 2023

• gs-plugin

  Public
  Dockstore Google Cloud Storage file provisioning plugin

  Java

  •

  Apache License 2.0

  •1•1•0•4•Updated Sep 27, 2023Sep 27, 2023

• icgc-get-plugin

  Public archive
  Dockstore icgc get file provisioning plugin

  Java

  •0•0•0•2•Updated Sep 6, 2023Sep 6, 2023

• swagger-java-sam-client

  Public
  swagger-java-sam-client

  0•0•0•0•Updated May 11, 2023May 11, 2023

• swagger-java-quay-client

  Public
  swagger-java-quay-client

  0•0•0•1•Updated May 10, 2023May 10, 2023

• swagger-java-discourse-client

  Public
  swagger-java-discourse-client

  0•0•0•0•Updated May 10, 2023May 10, 2023

• swagger-java-bitbucket-client

  Public
  swagger-java-bitbucket-client

  0•0•0•9•Updated May 10, 2023May 10, 2023

• orcid-model

  Public
  Container for all classes that will be used to marshal and unmarshal XML/JSON from the API

  Java

  •

  Other

  •29•0•0•0•Updated May 8, 2023May 8, 2023

• dockstore-snakemake-interface

  Public
  Dockstore Plugin for Snakemake Workflows

  Java

  •

  Other

  •0•0•0•3•Updated Dec 14, 2022Dec 14, 2022