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    399 repositories

    • MIES

      Public
      Multichannel Igor Electrophysiology Suite
      electrophysiologyigor-prosupported
      IGOR Pro
      •
      Other
      •8•24•287•9•Updated Nov 29, 2024Nov 29, 2024

    • asap-modules

      Public
      Shared repo for EM connectomics and Array Tomography render based image processing modules
      Python
      •
      BSD 2-Clause "Simplified" License
      •4•14•13•1•Updated Nov 27, 2024Nov 27, 2024

    • TEM_config

      Public
      0•0•1•0•Updated Nov 27, 2024Nov 27, 2024

    • axonal_connectomics

      Public
      Repository for tools developed for axonal connectomics
      Jupyter Notebook
      •
      Other
      •1•2•3•0•Updated Nov 27, 2024Nov 27, 2024

    • transcriptomic_clustering

      Public
      improved clustering pipeline for transcriptomic data
      Python
      •
      Other
      •1•4•17•5•Updated Nov 27, 2024Nov 27, 2024

    • deep-neurographs

      Public
      Deep-Neurographs is a Python module that utilizes machine learning to detect and correct false splits in a predicted neuron segmentation.
      Python
      •
      MIT License
      •0•3•0•0•Updated Nov 27, 2024Nov 27, 2024

    • biofile-finder

      Public
      An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•51•3•Updated Nov 27, 2024Nov 27, 2024

    • np_notebooks

      Public
      Jupyter Notebook
      •3•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • dynamic_routing_analysis

      Public
      Tools for accessing, processing and presenting data from Dynamic Routing experiments.
      Jupyter Notebook
      •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • cell_type_mapper

      Public
      Repository for storing prototype functionality implementations for the BKP
      Python
      •
      Other
      •4•18•6•2•Updated Nov 26, 2024Nov 26, 2024

    • distributed-vae

      Public
      Distributed training of multi-arm variational autoencoding networks
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

    • sciduck

      Public
      Jupyter Notebook
      •2•1•4•0•Updated Nov 26, 2024Nov 26, 2024

    • vis

      Public
      Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats
      TypeScript
      •
      BSD 3-Clause "New" or "Revised" License
      •0•4•0•2•Updated Nov 26, 2024Nov 26, 2024

    • openscope_databook

      Public
      OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
      visualizationpythonreproducible-researchdata-visualizationdata-analysisnwbdandi-archive
      Python
      •
      Other
      •19•64•12•0•Updated Nov 26, 2024Nov 26, 2024

    • ephys-analysis-tools

      Public
      Code base generating formatted data tables that streamlines data analysis process for ephys production metadata.
      Python
      •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

    • jem

      Public
      Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.
      HTML
      •
      Other
      •3•3•0•0•Updated Nov 25, 2024Nov 25, 2024

    • aisynphys

      Public
      Analysis tools specific to the aiephys multipatch project.
      Python
      •
      Other
      •19•11•1•0•Updated Nov 25, 2024Nov 25, 2024

    • visual_behavior_analysis

      Public
      Python package for analyzing behavioral data for Brain Observatory: Visual Behavior
      pythonbehaviorneurosciencepsychologypsychophysics
      Jupyter Notebook
      •
      Other
      •6•22•65•6•Updated Nov 25, 2024Nov 25, 2024

    • npc_sessions

      Public
      Tools for accessing and packaging data from behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
      Python
      •1•1•53•0•Updated Nov 23, 2024Nov 23, 2024

    • AllenInstituteTaxonomy

      Public
      0•1•2•0•Updated Nov 23, 2024Nov 23, 2024

    • cplAE_MET

      Public
      Coupled autoencoder extension for MET analysis.
      Jupyter Notebook
      •0•1•0•0•Updated Nov 22, 2024Nov 22, 2024

    • npc_sessions_cache

      Public
      Scripts, notebooks and plots that operate on NWB or NWB-like objects from `npc_sessions` in the cloud.
      Jupyter Notebook
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • motion_energy_PCA

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • mtrain_regimens

      Public
      Repository to track training stages and regimens for visual behavior
      Python
      •
      Other
      •4•3•14•0•Updated Nov 21, 2024Nov 21, 2024

    • txtox

      Public
      Experiments to relate gene expression and anatomical location
      Jupyter Notebook
      •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • abc_atlas_access

      Public
      Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
      Jupyter Notebook
      •
      Other
      •22•54•13•5•Updated Nov 21, 2024Nov 21, 2024

    • bmtk

      Public
      Brain Modeling Toolkit
      pythonsimulationmodelingneuroscienceneural-networksneuroinformaticsneuron
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •88•275•58•9•Updated Nov 20, 2024Nov 20, 2024

    • ZeroMQ-XOP

      Public
      The ZeroMQ XOP enables Igor Pro to interface over the network using a ZeroMQ messaging layer and JSON as message format
      C
      •
      BSD 3-Clause "New" or "Revised" License
      •8•9•10•0•Updated Nov 19, 2024Nov 19, 2024

    • scrattch.mapping

      Public
      Genearlized mapping scripts for RNA-seq and Patch-seq data
      R
      •2•9•8•0•Updated Nov 18, 2024Nov 18, 2024

    • scrattch.patchseq

      Public
      R
      •1•0•0•0•Updated Nov 18, 2024Nov 18, 2024