diff --git a/src/ontology/mireot/obi-mireot.owl b/src/ontology/mireot/obi-mireot.owl index d10824a6..d86eeb33 100644 --- a/src/ontology/mireot/obi-mireot.owl +++ b/src/ontology/mireot/obi-mireot.owl @@ -1,3 +1,4 @@ +Prefix(:=) Prefix(owl:=) Prefix(rdf:=) Prefix(xml:=) @@ -41,6 +42,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -601,4918 +603,6529 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) + +############################ +# Object Properties +############################ + +# Object Property: (has_specified_input) + +AnnotationAssertion( "has_specified_input"^^xsd:string) +AnnotationAssertion( "see is_input_of example_of_usage"@en) +AnnotationAssertion( "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en) +AnnotationAssertion( "8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works."^^xsd:string) +AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) +AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) +AnnotationAssertion( "PERSON: Larry Hunter"^^xsd:string) +AnnotationAssertion( "PERSON: Melanie Coutot"^^xsd:string) +AnnotationAssertion(rdfs:label "has_specified_input"@en) +ObjectPropertyDomain( ) + +# Object Property: (has_specified_output) + +AnnotationAssertion( "has_specified_output"^^xsd:string) +AnnotationAssertion( "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en) +AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) +AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) +AnnotationAssertion( "PERSON: Larry Hunter"^^xsd:string) +AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion(rdfs:label "has_specified_output"@en) +InverseObjectProperties( ) +ObjectPropertyDomain( ) + +# Object Property: (is_manufactured_by) + +ObjectPropertyRange( ObjectUnionOf( )) + +# Object Property: (is_specified_output_of) + +AnnotationAssertion( "is_specified_output_of"^^xsd:string) +AnnotationAssertion( "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en) +AnnotationAssertion( "Alan Ruttenberg"@en) +AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) +AnnotationAssertion(rdfs:label "is_specified_output_of"@en) +ObjectPropertyRange( ) + +# Object Property: (achieves_planned_objective) + +ObjectPropertyDomain( ) + +# Object Property: (has grain) + +AnnotationAssertion( "has grain"^^xsd:string) +AnnotationAssertion( "the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car."^^xsd:string) +AnnotationAssertion( "Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form"@en) +AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) +AnnotationAssertion( "PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "has grain"^^xsd:string) +SubObjectPropertyOf( ) + +# Object Property: (objective_achieved_by) + +ObjectPropertyRange( ) + + + +############################ +# Classes +############################ + +# Class: (technique) + SubClassOf( ) -AnnotationAssertion( ) + +# Class: (mass spectrometry imaging) + +AnnotationAssertion( "Mass spectrometry imaging (MSI) is a technique used in mass spectrometry to visualize the spatial distribution of molecules, as biomarkers, metabolites, peptides or proteins by their molecular masses."^^xsd:string) +AnnotationAssertion( "Juliane Schneider"^^xsd:string) +AnnotationAssertion( "MSI"^^xsd:string) +AnnotationAssertion( "https://en.wikipedia.org/wiki/Mass_spectrometry_imaging") +AnnotationAssertion(rdfs:label "mass spectrometry imaging"@en) +SubClassOf( ) + +# Class: (planned process) + +AnnotationAssertion( "planned process"@en) AnnotationAssertion( "Injecting mice with a vaccine in order to test its efficacy"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A processual entity that realizes a plan which is the concretization of a plan specification."@en) +AnnotationAssertion( "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)"^^xsd:string) AnnotationAssertion( "Bjoern Peters"^^xsd:string) AnnotationAssertion( "branch derived"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A processual entity that realizes a plan which is the concretization of a plan specification."@en) AnnotationAssertion(rdfs:label "planned process"@en) -AnnotationAssertion( "planned process"@en) -AnnotationAssertion( "'Plan' includes a future direction sense. That can be problematic if plans are changed during their execution. There are however implicit contingencies for protocols that an agent has in his mind that can be considered part of the plan, even if the agent didn't have them in mind before. Therefore, a planned process can diverge from what the agent would have said the plan was before executing it, by adjusting to problems encountered during execution (e.g. choosing another reagent with equivalent properties, if the originally planned one has run out.)"^^xsd:string) + +# Class: (regulatory role) + +AnnotationAssertion( "regulatory role"@en) +AnnotationAssertion( "Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "regulatory role"@en) -AnnotationAssertion( ) -AnnotationAssertion( "OBI, CDISC"@en) -AnnotationAssertion( "GROUP: Role branch"@en) AnnotationAssertion( "a role which inheres in material entities and is realized in the processes of making, enforcing or being defined by legislation or orders issued by a governmental body."@en) -AnnotationAssertion( "regulatory role"@en) +AnnotationAssertion( "GROUP: Role branch"@en) +AnnotationAssertion( "OBI, CDISC"@en) AnnotationAssertion( "govt agents responsible for creating regulations; proxies for enforcing regulations. CDISC definition: regulatory authorities. Bodies having the power to regulate. NOTE: In the ICH GCP guideline the term includes the authorities that review submitted clinical data and those that conduct inspections. These bodies are sometimes referred to as competent"@en) -AnnotationAssertion( "Regulatory agency, Ethics committee, Approval letter; example: Browse these EPA Regulatory Role subtopics http://www.epa.gov/ebtpages/enviregulatoryrole.html Feb 29, 2008"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "regulatory role"@en) SubClassOf( ) DisjointClasses( ) -AnnotationAssertion( "Frank Gibson"@en) + +# Class: (chromatography column) + AnnotationAssertion( "chromatography column"@en) AnnotationAssertion( ) +AnnotationAssertion( "Chromatography column in chemistry is a tube and contents (typically glass) used to purify individual chemical compounds from mixtures of compounds. It is often used for preparative applications on scales from micrograms up to kilograms."@en) +AnnotationAssertion( "Frank Gibson"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Column_chromatography"@en) AnnotationAssertion( "open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178"^^xsd:string) -AnnotationAssertion(rdfs:label "chromatography column"@en) AnnotationAssertion( ) -AnnotationAssertion( "Chromatography column in chemistry is a tube and contents (typically glass) used to purify individual chemical compounds from mixtures of compounds. It is often used for preparative applications on scales from micrograms up to kilograms."@en) +AnnotationAssertion(rdfs:label "chromatography column"@en) SubClassOf( ) -AnnotationAssertion( "OBI"@en) + +# Class: (pump valve switch) + +AnnotationAssertion( "pump valve switch"@en) AnnotationAssertion( ) -AnnotationAssertion( "FG:I would assume this should be a pump valve control switch and it would not be specific to a liquid chromatography instrument"@en) AnnotationAssertion( "A pump valve switch is a cardinal part of a liquid chromatography instrument that controls the flow."@en) -AnnotationAssertion( ) +AnnotationAssertion( "FG:I would assume this should be a pump valve control switch and it would not be specific to a liquid chromatography instrument"@en) AnnotationAssertion( "OBI Instrument branch"@en) +AnnotationAssertion( "OBI"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pump valve switch"@en) -AnnotationAssertion( "pump valve switch"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (xenotransplantation) + +AnnotationAssertion( "xenotransplantation"@en) +AnnotationAssertion( ) +AnnotationAssertion( "is the transplantation of living cells, tissues or \\norgans from one species to another such as from pigs to humans"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( ) -AnnotationAssertion( "xenotransplantation"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "xenotransplantation"@en) -AnnotationAssertion( "is the transplantation of living cells, tissues or \\norgans from one species to another such as from pigs to humans"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "processed material"@en) -AnnotationAssertion( ) + +# Class: (processed material) + AnnotationAssertion( "processed material"@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) AnnotationAssertion( "Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples"@en) AnnotationAssertion( ) AnnotationAssertion( "Is a material entity that is created or changed during material processing."@en) -EquivalentClasses( ObjectIntersectionOf(ObjectSomeValuesFrom( ) )) +AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "processed material"@en) +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "chromatography instrument"@en) -AnnotationAssertion(rdfs:label "chromatography device"@en) -AnnotationAssertion( "open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178"^^xsd:string) -AnnotationAssertion( "Frank Gibson"@en) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Chromatography"@en) + +# Class: (chromatography device) + AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) AnnotationAssertion( "a device that facilitates the separation of mixtures. The function of a chromatography device involves passing a mixture dissolved in a \"mobile phase\" through a stationary phase, which separates the analyte to be measured from other molecules in the mixture and allows it to be isolated."@en) +AnnotationAssertion( "Frank Gibson"@en) +AnnotationAssertion( "chromatography instrument"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Chromatography"@en) +AnnotationAssertion( "open tracker https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chromatography device"@en) SubClassOf( ) -AnnotationAssertion( "A mass spectrometer is an instrument which is used to measure the mass to charge ratio of ions. All mass spectrometers consist of three basic parts: an ion source, a mass analyzer, and a detector system. The stages within the mass spectrometer are: 1. Production of ions from the sample 2. Separation of ions with different masses 3. Detection of the number of ions of each mass produced 4.Collection of data to generate the mass spectrum"@en) -AnnotationAssertion( "LCQ Fleet Ion Trap MSn manufactured by thermo fisher scientific"@en) + +# Class: (mass spectrometer) + AnnotationAssertion( "mass spectrometer"@en) -AnnotationAssertion(rdfs:label "mass spectrometer"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Mass_spectrometry"@en) +AnnotationAssertion( "LCQ Fleet Ion Trap MSn manufactured by thermo fisher scientific"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A mass spectrometer is an instrument which is used to measure the mass to charge ratio of ions. All mass spectrometers consist of three basic parts: an ion source, a mass analyzer, and a detector system. The stages within the mass spectrometer are: 1. Production of ions from the sample 2. Separation of ions with different masses 3. Detection of the number of ions of each mass produced 4.Collection of data to generate the mass spectrum"@en) AnnotationAssertion( "Frank Gibson"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Mass_spectrometry"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mass spectrometer"@en) SubClassOf( ) + +# Class: (obsolete_platform) + AnnotationAssertion( "platform"@en) -AnnotationAssertion( ) -AnnotationAssertion( "suggested for deprecation https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178"^^xsd:string) -AnnotationAssertion( "OBI Instrument branch"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A platform is an object_aggregate that is the set of instruments and software needed to perform a process. definition_source: OBI."@en) +AnnotationAssertion( "OBI Instrument branch"^^xsd:string) AnnotationAssertion( "OBI Instrument branch"^^xsd:string) +AnnotationAssertion( "suggested for deprecation https://sourceforge.net/tracker/index.php?func=detail&aid=2881353&group_id=177891&atid=886178"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "obsolete_platform"@en) SubClassOf( ) + +# Class: (liquid chromatography mass spectrometry platform) + AnnotationAssertion( "liquid chromatography mass spectrometry platform"@en) AnnotationAssertion( ) AnnotationAssertion( "A liquid chromatography mass spectrometry platform is a platform that is the collection of instrument, software and reagents needed to perform a liquid chromatography mass spectrometry protocol. definition_source: OBI."@en) -AnnotationAssertion( ) AnnotationAssertion( "OBI instrument branch"^^xsd:string) -AnnotationAssertion(rdfs:label "liquid chromatography mass spectrometry platform"@en) AnnotationAssertion( "OBI Instrument branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "liquid chromatography mass spectrometry platform"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "microarray platform"@en) -AnnotationAssertion( ) + +# Class: (microarray platform) + +AnnotationAssertion( "microarray platform"@en) +AnnotationAssertion( ) AnnotationAssertion( "A microarray platform is a platform that contains the instruments, software and reagents needed to perform a microarray protocol. definition_source: OBI."@en) AnnotationAssertion( "OBI Instrument branch"^^xsd:string) AnnotationAssertion( "OBI Instrument branch"^^xsd:string) -AnnotationAssertion( "microarray platform"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microarray platform"@en) SubClassOf( ) + +# Class: (allotransplantation) + AnnotationAssertion( "allotransplantation"@en) +AnnotationAssertion( ) +AnnotationAssertion( "is the transplantation of organs between members of the same species."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "is the transplantation of organs between members of the same species."@en) AnnotationAssertion(rdfs:label "allotransplantation"@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "Frank Gibson"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A Geiger counter"^^xsd:string) + +# Class: (gamma counter) + AnnotationAssertion( "gamma counter"@en) +AnnotationAssertion( "A Geiger counter"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A processed material which measures gamma radiation"@en) -AnnotationAssertion(rdfs:label "gamma counter"@en) -AnnotationAssertion( ) +AnnotationAssertion( "Frank Gibson"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Gamma_counter"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gamma counter"@en) SubClassOf( ) + +# Class: (investigation) + +AnnotationAssertion( "investigation"@en) AnnotationAssertion( "Lung cancer investigation using expression profiling, a stem cell transplant investigation, biobanking is not an investigation, though it may be part of an investigation"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s)."@en) AnnotationAssertion( "Bjoern Peters"@en) -AnnotationAssertion( "Could add specific objective specification"^^xsd:string) +AnnotationAssertion( ""^^xsd:string) AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "Could add specific objective specification"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "investigation"@en) -AnnotationAssertion( "a planned process that consists of parts: planning, study design execution, documentation and which produce conclusion(s)."@en) -AnnotationAssertion( ""^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "investigation"@en) SubClassOf( ) -AnnotationAssertion( "measuring"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "assay"@en) + +# Class: (assay) + AnnotationAssertion( "assay"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house."^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A planned process with the objective to produce information about some evaluant"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "measuring"@en) AnnotationAssertion( "scientific observation"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "Assay the wavelength of light emitted by excited Neon atoms. Count of geese flying over a house."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "assay"@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) + +# Class: (sample preparation for assay) + AnnotationAssertion( "sample preparation for assay"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion(rdfs:label "sample preparation for assay"@en) AnnotationAssertion( ) AnnotationAssertion( "A sample_preparation_for_assay is a protocol_application including material_enrollments and biomaterial_transformations. definition_source: OBI."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "study"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sample preparation for assay"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (reagent role) + AnnotationAssertion( "reagent role"^^xsd:string) -AnnotationAssertion( "Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term."^^xsd:string) +AnnotationAssertion( "Buffer, dye, a catalyst, a solvating agent."@en) +AnnotationAssertion( ) AnnotationAssertion( "a role played by a molecular entity used to produce a chemical reaction to detect, measure, or produce other substances"@en) +AnnotationAssertion( "GROUP: Role Branch"@en) AnnotationAssertion( "reagent"^^xsd:string) +AnnotationAssertion( "www.answers.com/topic/reagent; November 2008"^^xsd:string) +AnnotationAssertion( "Feb 10, 2009. changes after discussion at OBI Consortium Workshop Feb 2-6, 2009. accepted as core term."^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "reagent role"@en) -AnnotationAssertion( "GROUP: Role Branch"@en) -AnnotationAssertion( "www.answers.com/topic/reagent; November 2008"^^xsd:string) -AnnotationAssertion( "Buffer, dye, a catalyst, a solvating agent."@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "PERSON: Philippe Rocca Serra"^^xsd:string) + +# Class: (material processing) + AnnotationAssertion( "material processing"^^xsd:string) -AnnotationAssertion(rdfs:label "material processing"@en) -AnnotationAssertion( "A planned process which results in physical changes in a specified input material"@en) +AnnotationAssertion( "A cell lysis, production of a cloning vector, creating a buffer."^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion( "A planned process which results in physical changes in a specified input material"@en) AnnotationAssertion( "PERSON: Bjoern Peters"@en) +AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) AnnotationAssertion( "PERSON: Jennifer Fostel"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion( "PERSON: Philippe Rocca Serra"^^xsd:string) AnnotationAssertion( "material transformation"@en) -AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) -AnnotationAssertion( "A cell lysis, production of a cloning vector, creating a buffer."^^xsd:string) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "material processing"@en) EquivalentClasses( ObjectSomeValuesFrom( )) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectAllValuesFrom( )) SubClassOf( ObjectAllValuesFrom( )) -AnnotationAssertion(rdfs:label "transplantation"@en) + +# Class: (transplantation) + +AnnotationAssertion( "transplantation"@en) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application to replace an organ or tissue of an organism"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "transplantation"@en) -AnnotationAssertion( "a protocol application to replace an organ or tissue of an organism"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transplantation"@en) SubClassOf( ) + +# Class: (Bernoulli trial) + +AnnotationAssertion( "Bernoulli trial"@en) AnnotationAssertion( ) +AnnotationAssertion( "is an assay where the output data is a datum with one of two values denoted success and failure."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Bernoulli trial"@en) -AnnotationAssertion( "Bernoulli trial"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "is an assay where the output data is a datum with one of two values denoted success and failure."@en) SubClassOf( ) + +# Class: (incubator) + AnnotationAssertion( "incubator"@en) +AnnotationAssertion( "Incubators are used in microbiology for culturing (growing) bacteria and other microorganisms. Incubators in tissue culture rooms are used for culturing stem cells, lymphocytes, skin fibroblasts and other types of cells"@en) AnnotationAssertion( ) +AnnotationAssertion( "a device in which environmental conditions (light, photoperiod, temperature, humidity, etc.) can be controlled"@en) AnnotationAssertion( "Frank Gibson"@en) +AnnotationAssertion( "http://www.medterms.com/script/main/art.asp?articlekey=18426"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "incubator"@en) -AnnotationAssertion( "a device in which environmental conditions (light, photoperiod, temperature, humidity, etc.) can be controlled"@en) -AnnotationAssertion( "Incubators are used in microbiology for culturing (growing) bacteria and other microorganisms. Incubators in tissue culture rooms are used for culturing stem cells, lymphocytes, skin fibroblasts and other types of cells"@en) -AnnotationAssertion( "http://www.medterms.com/script/main/art.asp?articlekey=18426"@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) + +# Class: (cell co-culturing) + AnnotationAssertion( "cell co-culturing"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "Culturing cytotoxic T-lymphocytes together with target cells in order to study lysis of the target cells. See chromium_release_assay"@en) +AnnotationAssertion( ) AnnotationAssertion( "A material combination in which cell cultures of two or more different types are are combined and allowed to culture as one."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell co-culturing"@en) -AnnotationAssertion( "Culturing cytotoxic T-lymphocytes together with target cells in order to study lysis of the target cells. See chromium_release_assay"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (autotransplantation) + +AnnotationAssertion( "autotransplantation"@en) AnnotationAssertion( ) AnnotationAssertion( "is the transplantation of tissue from one part of \\nthe body to another in the same individual. )"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion(rdfs:label "autotransplantation"@en) -AnnotationAssertion( "autotransplantation"@en) AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "autotransplantation"@en) SubClassOf( ) + +# Class: (nuclear magnetic resonance assay) + AnnotationAssertion( "nuclear magnetic resonance assay"@en) +AnnotationAssertion( ) +AnnotationAssertion( "an assay used to identify the chemical structure of a compound or biological macromolecule using an NMR instrument. "@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nuclear magnetic resonance assay"@en) -AnnotationAssertion( "an assay used to identify the chemical structure of a compound or biological macromolecule using an NMR instrument. "@en) SubClassOf( ) -AnnotationAssertion( "An imaging assay is an assay to produce a picture of an entity. definition_source: OBI."@en) + +# Class: (imaging assay) + +AnnotationAssertion( "imaging assay"@en) AnnotationAssertion( ) +AnnotationAssertion( "An imaging assay is an assay to produce a picture of an entity. definition_source: OBI."@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "imaging assay"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion(rdfs:label "imaging assay"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "imaging assay"@en) SubClassOf( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Microtiter_plate"@en) -AnnotationAssertion( "A microtiter_plate is a flat plate with multiple wells used as small test tubes."@en) + +# Class: (microtiter plate) + AnnotationAssertion( "microtiter plate"@en) +AnnotationAssertion( "A microtiter plate with 6, 24, 96, 384 or 1536 sample wells used in the enzyme-linked immunosorbent assay (ELISA)"@en) AnnotationAssertion( ) +AnnotationAssertion( "A microtiter_plate is a flat plate with multiple wells used as small test tubes."@en) AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion(rdfs:label "microtiter plate"@en) -AnnotationAssertion( "A microtiter plate with 6, 24, 96, 384 or 1536 sample wells used in the enzyme-linked immunosorbent assay (ELISA)"@en) AnnotationAssertion( "microplate"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Microtiter_plate"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microtiter plate"@en) SubClassOf( ) + +# Class: (radioactivity detection) + +AnnotationAssertion( "radioactivity detection"@en) +AnnotationAssertion( "Measurment of the radioactivity of a supernatant, as in chromium_release_assay."@en) AnnotationAssertion( ) AnnotationAssertion( "An assay in which a material's radioactivity is measured."@en) -AnnotationAssertion(rdfs:label "radioactivity detection"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "Measurment of the radioactivity of a supernatant, as in chromium_release_assay."@en) -AnnotationAssertion( "radioactivity detection"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "radioactivity detection"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (enzymatic cleavage) + +AnnotationAssertion( "enzymatic cleavage"@en) AnnotationAssertion( "Polymorphism R62W results in resistance of CD23 to enzymatic cleavage in cultured cells. Genes Immun. 2007 Apr;8(3):215-23. Epub 2007 Feb 15. PMID: 17301828"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "enzymatic cleavage"@en) +AnnotationAssertion( ) +AnnotationAssertion( "enzymatic cleavage is a protocol application to digest the fraction of input material that is susceptible to that enzyme"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "enzymatic cleavage"@en) -AnnotationAssertion( "enzymatic cleavage is a protocol application to digest the fraction of input material that is susceptible to that enzyme"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "enzymatic cleavage"@en) SubClassOf( ) + +# Class: (artificially induced nucleic acid hybridization) + +AnnotationAssertion( "artificially induced nucleic acid hybridization"@en) AnnotationAssertion( "www.ornl.gov/sci/techresources/Human_Genome/publicat/97pr/09gloss.html, http://www.accessexcellence.org/RC/VL/GG/nucleic.html, http://omrf.ouhsc.edu/~frank/HYBNOTES.html. http://en.wikipedia.org/wiki/Nucleic_acid_hybridization,http://www.pnas.org/cgi/reprint/46/8/1044.pdf"@en) AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion(rdfs:label "artificially induced nucleic acid hybridization"@en) AnnotationAssertion( "Is a material transformation in which strands of nucleic acids that are (somewhat) complementary form a double-stranded molecule. Has input at least two single stranded molecules of nucleic acid molecules."@en) -AnnotationAssertion( ) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "artificially induced nucleic acid hybridization"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "artificially induced nucleic acid hybridization"@en) SubClassOf( ) + +# Class: (DNA extraction) + AnnotationAssertion( "DNA extraction"@en) +AnnotationAssertion( ) AnnotationAssertion( "A DNA extraction is a nucleic acid extraction where the desired output material is DNA."@en) -AnnotationAssertion(rdfs:label "DNA extraction"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion(rdfs:label "DNA extraction"@en) SubClassOf( ) + +# Class: (protocol) + AnnotationAssertion( "protocol"@en) -AnnotationAssertion( "OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)"@en) -AnnotationAssertion( "a protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process."@en) +AnnotationAssertion( "PMID: 18388943.Nat Protoc. 2008;3(4):612-8.Protocol for the induction of arthritis in C57BL/6 mice."@en) AnnotationAssertion( ) +AnnotationAssertion( "a protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process."@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "PMID: 18388943.Nat Protoc. 2008;3(4):612-8.Protocol for the induction of arthritis in C57BL/6 mice."@en) +AnnotationAssertion( "OBI branch derived + wikipedia (http://en.wikipedia.org/wiki/Protocol_%28natural_sciences%29)"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protocol"@en) + +# Class: (protein-protein interaction detection) + +AnnotationAssertion( "protein-protein interaction detection"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "An assay with the objective to determine interactions between proteins, such as protein-protein binding."^^xsd:string) AnnotationAssertion( "20091101, Bjoern Peters: This class may be overly broad. Lot's of assays would seem to classify under it, and I have the feeling that the intend would be to limit this to determining protein-protein interactions as they occur within an organism, rather than e.g. peptide:MHC binding assays."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "protein-protein interaction detection"^^xsd:string) -AnnotationAssertion(rdfs:label "protein-protein interaction detection"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protein-protein interaction detection"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "transcription factor binding site identification"@en) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) + +# Class: (transcription factor binding site identification) + +AnnotationAssertion( "transcription factor binding site identification"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "OBI"^^xsd:string) AnnotationAssertion( "a planned process with objective to find DNA region specifically recognized by proteins that function as transcription factors"@en) -AnnotationAssertion( "transcription factor binding site identification"^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transcription factor binding site identification"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Bjoern Peters"@en) + +# Class: (histological sample preparation) + +AnnotationAssertion( "histological sample preparation"@en) AnnotationAssertion( ) +AnnotationAssertion( "histological sample preparation is the preparation of an input tissue via slicing and labeling to make tissue microstructure of interest visible in a future histology assay"@en) +AnnotationAssertion( "PERSON:Bjoern Peters"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "histological sample preparation"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "histological sample preparation"@en) -AnnotationAssertion( "histological sample preparation is the preparation of an input tissue via slicing and labeling to make tissue microstructure of interest visible in a future histology assay"@en) SubClassOf( ) -AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "A Mass analyzer is a device that separates ions according to their mass-to-charge ratio. All mass spectrometers are based on dynamics of charged particles in electric and magnetic fields in vacuum where the two laws of Lorentz force law and Newton's second law of motion apply."@en) + +# Class: (mass analyzer) + AnnotationAssertion( "mass analyzer"@en) -AnnotationAssertion(rdfs:label "mass analyzer"@en) AnnotationAssertion( "The mass analyzer of the Voyager-DE(tm) STR Biospectrometry Workstation"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A Mass analyzer is a device that separates ions according to their mass-to-charge ratio. All mass spectrometers are based on dynamics of charged particles in electric and magnetic fields in vacuum where the two laws of Lorentz force law and Newton's second law of motion apply."@en) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Mass_spectrometry#Mass_analyzer"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mass analyzer"@en) SubClassOf( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Mass_spectrometry#Ion_source"^^xsd:string) -AnnotationAssertion( ) + +# Class: (ion source) + +AnnotationAssertion( "ion source"@en) AnnotationAssertion( "The ion source of a Voyager-DE‚Ñ¢ STR Biospectrometry Workstation"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Mass_spectrometry#Ion_source"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ion source"@en) -AnnotationAssertion( "ion source"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (ion detector) + AnnotationAssertion( "ion detector"@en) +AnnotationAssertion( "The ion detector of the Voyager-DE(tm) STR Biospectrometry Workstation"@en) +AnnotationAssertion( ) +AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Mass_spectrometry#Detector"^^xsd:string) -AnnotationAssertion(rdfs:label "ion detector"@en) AnnotationAssertion( ) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( "The ion detector of the Voyager-DE(tm) STR Biospectrometry Workstation"@en) +AnnotationAssertion(rdfs:label "ion detector"@en) SubClassOf( ) -AnnotationAssertion( "metabolite assay"^^xsd:string) + +# Class: (metabolite profiling) + AnnotationAssertion( "metabolite profiling"^^xsd:string) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "OBI"^^xsd:string) -AnnotationAssertion(rdfs:label "metabolite profiling"@en) +AnnotationAssertion( "Metabolite profiling of human colon carcinoma - deregulation of TCA cycle and amino acid turnover. Mol Cancer. 2008 Sep 18;7(1):72. PMID: 18799019"@en) AnnotationAssertion( ) AnnotationAssertion( "metabolite profiling is a process which aims at detecting and identifying chemical entities resulting from biochemical and cellular metabolism"@en) -AnnotationAssertion( "Metabolite profiling of human colon carcinoma - deregulation of TCA cycle and amino acid turnover. Mol Cancer. 2008 Sep 18;7(1):72. PMID: 18799019"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "metabolite assay"^^xsd:string) +AnnotationAssertion( "OBI"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metabolite profiling"@en) SubClassOf( ) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) + +# Class: (record function) + AnnotationAssertion( "record function"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A record function is a function that registers or collects information in a particular format on a particular recording medium. For example on paper or a digital representation"@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "record function"@en) -AnnotationAssertion( "A record function is a function that registers or collects information in a particular format on a particular recording medium. For example on paper or a digital representation"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) SubClassOf( ) + +# Class: (magnify function) + +AnnotationAssertion( "magnify function"@en) +AnnotationAssertion( ) AnnotationAssertion( "A magnify function is a function to increase the size of a transmitted object image through the precise arrangement of energy diffraction elements along an imaging path."@en) -AnnotationAssertion( ) -AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "magnify function"@en) -AnnotationAssertion(rdfs:label "magnify function"@en) AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "magnify function"@en) SubClassOf( ) -AnnotationAssertion( "A contain function is a function to constrain a material entities location in space"@en) -AnnotationAssertion( "Daniel Schober"^^xsd:string) + +# Class: (contain function) + AnnotationAssertion( "contain function"@en) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) AnnotationAssertion( "A syringe, a beaker"^^xsd:string) -AnnotationAssertion(rdfs:label "contain function"@en) AnnotationAssertion( ) +AnnotationAssertion( "A contain function is a function to constrain a material entities location in space"@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "contain function"@en) SubClassOf( ) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "heat function"@en) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "Daniel Schober"^^xsd:string) + +# Class: (heat function) + AnnotationAssertion( "heat function"@en) +AnnotationAssertion( ) AnnotationAssertion( "A heat function is a function that increases the internal kinetic energy of a material"@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heat function"@en) SubClassOf( ) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "Frank Gibson"^^xsd:string) + +# Class: (material separation function) + +AnnotationAssertion( "material separation function"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "material separation function"@en) +AnnotationAssertion( "A material separation function is a function that increases the resolution between two or more material entities. The to distinction between the entities is usually based on some associated physical quality."@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A material separation function is a function that increases the resolution between two or more material entities. The to distinction between the entities is usually based on some associated physical quality."@en) -AnnotationAssertion( "material separation function"@en) +AnnotationAssertion(rdfs:label "material separation function"@en) SubClassOf( ) -AnnotationAssertion( "Person:Bjoern Peters"^^xsd:string) -AnnotationAssertion(rdfs:label "ionize process"@en) -AnnotationAssertion( "2009-11-10. Tracker: http://en.wikipedia.org/wiki/Ionize"^^xsd:string) -AnnotationAssertion( "Electrospray ionization in mass spectrometry"^^xsd:string) -AnnotationAssertion( "a physical process of converting an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions. This excludes chemical processes of dissociation."^^xsd:string) + +# Class: (ionize process) + AnnotationAssertion( "ionize process"^^xsd:string) +AnnotationAssertion( "Electrospray ionization in mass spectrometry"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "a physical process of converting an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions. This excludes chemical processes of dissociation."^^xsd:string) +AnnotationAssertion( "2009-11-10. Tracker: http://en.wikipedia.org/wiki/Ionize"^^xsd:string) +AnnotationAssertion( "Person:Bjoern Peters"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ionize process"@en) SubClassOf( ) + +# Class: (excitation function) + +AnnotationAssertion( "excitation function"@en) +AnnotationAssertion( ) AnnotationAssertion( "A excitation function is a function to inject energy by bombarding a material with energetic particles (e.g., photons) thereby imbuing internal material components such as electrons with additional energy. These internal, 'excited' particles may lead to the rupturing of covalent chemical bonds or may quickly relax back to there unexcited state with an exponential time course thereby locally emitting energy in the form of photons."@en) -AnnotationAssertion(rdfs:label "excitation function"@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "excitation function"@en) AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "excitation function"@en) SubClassOf( ) + +# Class: (freeze function) + +AnnotationAssertion( "freeze function"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A freeze function is a function to decrease the internal kinetic energy of a material below the freezing point of that type of material."@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "A freeze function is a function to decrease the internal kinetic energy of a material below the freezing point of that type of material."@en) -AnnotationAssertion( ) AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "freeze function"@en) -AnnotationAssertion( "freeze function"@en) SubClassOf( ) -AnnotationAssertion( "Frank Gibson"^^xsd:string) + +# Class: (synthesizing function) + +AnnotationAssertion( "synthesizing function"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "synthesizing function"@en) +AnnotationAssertion( "A synthesizing function is a function to assemble new output materials from distinct input materials. The output materials typically consist of chemically distinct monomeric objects or object aggregate polymers."^^xsd:string) AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "synthesizing function"@en) -AnnotationAssertion( ) AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( "A synthesizing function is a function to assemble new output materials from distinct input materials. The output materials typically consist of chemically distinct monomeric objects or object aggregate polymers."^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "synthesizing function"@en) SubClassOf( ) -AnnotationAssertion( "Bill Bug"^^xsd:string) + +# Class: (perturb function) + AnnotationAssertion( "perturb function"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion(rdfs:label "perturb function"@en) +AnnotationAssertion( ) AnnotationAssertion( "A perturb function is a function that disrupts the normal function of a system induced through either internal or external means. External means of perturbation include: (1) displacement fields in the physical sense - e.g., temperature change, osmotic shock, pressure change; (2) application of small molecules such as drugs or toxins to perturb the function of specific pathways or application of surfactants to perturb the normal function of plasma membrane. Internal means of perturbation include: (1) manipulation of gene function via gene knockout or transcript knockdown via RNAi; (2) directed genetic mutation leading to minimal aa alterations that interfere with peptide function."@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Perturbation_biology"@en) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Perturbation_biology"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "perturb function"@en) SubClassOf( ) -AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Mechanical_work"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) + +# Class: (mechanical function) + +AnnotationAssertion( "mechanical function"@en) +AnnotationAssertion( ) AnnotationAssertion( "A mechanical function is a function that is realised via mechanical work (through an certain amount of energy transferred by some force)."@en) AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "mechanical function"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Mechanical_work"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mechanical function"@en) SubClassOf( ) -AnnotationAssertion( "Daniel Schober"^^xsd:string) + +# Class: (transfer function) + AnnotationAssertion( "transfer function"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "transfer function"@en) AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( "A transfer function is a function to displace a material from one location to another."@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transfer function"@en) SubClassOf( ) -AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( ) + +# Class: (cool function) + AnnotationAssertion( "cool function"@en) -AnnotationAssertion(rdfs:label "cool function"@en) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A cool function is a function to decrease the internal kinetic energy of a material below the initial kinetic energy of that type of material."@en) +AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cool function"@en) SubClassOf( ) -AnnotationAssertion( "isoelectric focusing unit"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) + +# Class: (isoelectric focusing device) + AnnotationAssertion( "isoelectric focusing device"@en) -AnnotationAssertion( "An isoelectric focusing device is a device in which isoelectric focusing can be performed. An isoelectric focussing device had the function to contain and control the contained environment and transfer electrical energy from a power supply to a separation medium and the charged material to be separated."@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "isoelectric focusing device"@en) +AnnotationAssertion( "An isoelectric focusing device is a device in which isoelectric focusing can be performed. An isoelectric focussing device had the function to contain and control the contained environment and transfer electrical energy from a power supply to a separation medium and the charged material to be separated."@en) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "isoelectric focusing unit"@en) AnnotationAssertion( "sep:00097"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "isoelectric focusing device"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "information processor function"@en) -AnnotationAssertion( "data processor function"@en) -AnnotationAssertion( ) + +# Class: (information processor function) + AnnotationAssertion( "information processor function"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "An information processor function is a function that converts information from one form to another, by a lossless process or an extraction process."@en) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "data processor function"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "information processor function"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "signal conversion function"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "transduction function"^^xsd:string) -AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "A signal conversion function is an information processor function which transforms a signal into another type of signal. For example an analog-to-digital_converter, Ac/Ac converter, a synapse converts electrical action potentials into an intermediate chemical signal. The post synapse converts it back into an electric one passed on to the axon."@en) + +# Class: (signal conversion function) + AnnotationAssertion( "signal conversion function"@en) AnnotationAssertion( ) +AnnotationAssertion( "A signal conversion function is an information processor function which transforms a signal into another type of signal. For example an analog-to-digital_converter, Ac/Ac converter, a synapse converts electrical action potentials into an intermediate chemical signal. The post synapse converts it back into an electric one passed on to the axon."@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( "transduction function"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "signal conversion function"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "blot module"@en) -AnnotationAssertion( "sep:00092"^^xsd:string) -AnnotationAssertion( "A blot module is a device which has the function to conatin and facilitate the material transfer process blotting to be realised"@en) -AnnotationAssertion( ) + +# Class: (blot module) + AnnotationAssertion( "blot module"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A blot module is a device which has the function to conatin and facilitate the material transfer process blotting to be realised"@en) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "sep:00092"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "blot module"@en) SubClassOf( ) + +# Class: (signal amplification function) + AnnotationAssertion( "signal amplification function"@en) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "A signal amplification function is a signal conversion function to inject energy into an input signal so as to produce an output signal with increased differential magnitude while also seeking to minimize increases in the signal to noise ratio. For example, to produce a 0.1 KW output signal from a 1 mW RMS input signal."@en) AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) -AnnotationAssertion(rdfs:label "signal amplification function"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "A signal amplification function is a signal conversion function to inject energy into an input signal so as to produce an output signal with increased differential magnitude while also seeking to minimize increases in the signal to noise ratio. For example, to produce a 0.1 KW output signal from a 1 mW RMS input signal."@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "signal amplification function"@en) SubClassOf( ) + +# Class: (image acquisition function) + +AnnotationAssertion( "image acquisition function"@en) +AnnotationAssertion( ) AnnotationAssertion( "An image acquisition function is a function to acquire an image of a material"@en) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "image acquisition function"@en) -AnnotationAssertion( "image acquisition function"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "image acquisition function"@en) SubClassOf( ) -AnnotationAssertion( "Bill Bug"^^xsd:string) -AnnotationAssertion( "An environmental control function is a function that regulates a contained environment within specified parameter ranges. For example the control of light exposure, humidity and temperature."@en) + +# Class: (environment control function) + +AnnotationAssertion( "environment control function"@en) AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( "An environmental control function is a function that regulates a contained environment within specified parameter ranges. For example the control of light exposure, humidity and temperature."@en) +AnnotationAssertion( "Bill Bug"^^xsd:string) AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "environment control function"@en) -AnnotationAssertion( "environment control function"@en) SubClassOf( ) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion(rdfs:label "gel dryer"@en) -AnnotationAssertion( ) + +# Class: (gel dryer) + AnnotationAssertion( "gel dryer"@en) -AnnotationAssertion( "sep:00094"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A gel dryer is a device which has the function to contain and to control the contained environment to facilitate the drying of gels"@en) +AnnotationAssertion( "Frank Gibson"^^xsd:string) +AnnotationAssertion( "sep:00094"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gel dryer"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "The extraction of RNA from an input material that specifically isolates viral RNA"^^xsd:string) -AnnotationAssertion( "The AccuPrepTM Viral RNA Extraction Kit is designed for the rapid and convenient extraction of viral RNA from cell-free samples as serum, plasma, CSF, urine, etc - http://www.biokits.com/moreinfos.html?id=2703"^^xsd:string) + +# Class: (viral RNA extraction) + AnnotationAssertion( "viral RNA extraction"^^xsd:string) +AnnotationAssertion( "The AccuPrepTM Viral RNA Extraction Kit is designed for the rapid and convenient extraction of viral RNA from cell-free samples as serum, plasma, CSF, urine, etc - http://www.biokits.com/moreinfos.html?id=2703"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "viral RNA extraction"@en) +AnnotationAssertion( "The extraction of RNA from an input material that specifically isolates viral RNA"^^xsd:string) AnnotationAssertion( "Person:Bjoern Peters"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "viral RNA extraction"@en) SubClassOf( ) -AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) -AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) + +# Class: (recombinant plasmid) + AnnotationAssertion( "recombinant plasmid"@en) -AnnotationAssertion( "GROUP: OBI Biomaterial Branch"^^xsd:string) -AnnotationAssertion(rdfs:label "recombinant plasmid"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Kevin Clancy"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "a plasmid in which extraneous DNA has been inserted."^^xsd:string) +AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) +AnnotationAssertion( "PERSON: Kevin Clancy"^^xsd:string) +AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion( "GROUP: OBI Biomaterial Branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "recombinant plasmid"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "cell cycle synchronization"@en) + +# Class: (cell cycle synchronization) + +AnnotationAssertion( "cell cycle synchronization"^^xsd:string) AnnotationAssertion( "Elimination of serum from the culture medium for about 24 hours results in the accumulation of cells at G1 phase. This effect of nutritional deprivation can be restored by their addition by which time the cell synchrony occurs."@en) +AnnotationAssertion( ) AnnotationAssertion( "a process with the objective to obtain a cell culture in which all cells are in the same stage of the cell cycle"@en) +AnnotationAssertion( "OBI PA"^^xsd:string) AnnotationAssertion( "Bjoern Peters and Nicole Washington"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "cell cycle synchronization"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "OBI PA"^^xsd:string) +AnnotationAssertion(rdfs:label "cell cycle synchronization"@en) SubClassOf( ) -AnnotationAssertion( "PCR"@en) -AnnotationAssertion( "OBI Plan"^^xsd:string) -AnnotationAssertion( "PCR is the process in which a DNA polymerase is used to amplify a piece of DNA by in vitro enzymatic replication. As PCR progresses, the DNA thus generated is itself used as a template for replication. This sets in motion a chain reaction in which the DNA template is exponentially amplified."@en) + +# Class: (polymerase chain reaction) + +AnnotationAssertion( "polymerase chain reaction"^^xsd:string) +AnnotationAssertion( "Opisthorchis viverrini: Detection by polymerase chain reaction (PCR) in human stool samples. Exp Parasitol. 2008 Sep 9. PMID: 18805413"@en) AnnotationAssertion( ) +AnnotationAssertion( "PCR is the process in which a DNA polymerase is used to amplify a piece of DNA by in vitro enzymatic replication. As PCR progresses, the DNA thus generated is itself used as a template for replication. This sets in motion a chain reaction in which the DNA template is exponentially amplified."@en) +AnnotationAssertion( "OBI Plan"^^xsd:string) +AnnotationAssertion( "PCR"@en) AnnotationAssertion( "adapted from wikipedai"^^xsd:string) -AnnotationAssertion( "Opisthorchis viverrini: Detection by polymerase chain reaction (PCR) in human stool samples. Exp Parasitol. 2008 Sep 9. PMID: 18805413"@en) -AnnotationAssertion( "polymerase chain reaction"^^xsd:string) -AnnotationAssertion(rdfs:label "polymerase chain reaction"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polymerase chain reaction"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "measuring glucose concentration in blood serum"@en) + +# Class: (measuring glucose concentration in blood serum) + +AnnotationAssertion( "measuring glucose concentration in blood serum"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "An assay that determines the concentration of glucose molecules in a blood serum sample"^^xsd:string) AnnotationAssertion( "Person:Bjoern Peters"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "measuring glucose concentration in blood serum"^^xsd:string) +AnnotationAssertion(rdfs:label "measuring glucose concentration in blood serum"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) + +# Class: (syringe) + +AnnotationAssertion( "syringe"^^xsd:string) AnnotationAssertion( "Accuracy of oral liquid measuring devices: comparison of dosing cup and oral dosing syringe.Ann Pharmacother. 2008 Jan;42(1):46-52. Epub 2007 Dec 4. PMID: 18056832"@en) +AnnotationAssertion( ) AnnotationAssertion( "a processed material which is used to introduce or draw fluids from a material entity. A syringe is made of a piston and body. the movement of the piston in the body determines the amount/volume of fluid to inject or draw"@en) -AnnotationAssertion( "syringe"^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "OBI Instrument adapted from Wikipedia"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "syringe"@en) SubClassOf( ) + +# Class: (transcription profiling assay) + +AnnotationAssertion( "transcription profiling assay"^^xsd:string) +AnnotationAssertion( "Whole genome transcription profiling of Anaplasma phagocytophilum in human and tick host cells by tiling array analysis. BMC Genomics. 2008 Jul 31;9:364. PMID: 18671858"@en) AnnotationAssertion( ) AnnotationAssertion( "An assay which aims to provide information about gene expression and transcription activity using ribonucleic acids collected from a material entity using a range of techniques and instrument such as DNA sequencers, DNA microarrays, Northern Blot"@en) -AnnotationAssertion( ) -AnnotationAssertion( "gene expression profiling"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "Whole genome transcription profiling of Anaplasma phagocytophilum in human and tick host cells by tiling array analysis. BMC Genomics. 2008 Jul 31;9:364. PMID: 18671858"@en) -AnnotationAssertion( "transcription profiling assay"^^xsd:string) -AnnotationAssertion(rdfs:label "transcription profiling assay"@en) +AnnotationAssertion( "gene expression profiling"@en) AnnotationAssertion( "OBI"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "transcription profiling assay"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "DNA sequence feature detection"@en) + +# Class: (DNA sequence feature detection) + +AnnotationAssertion( "DNA sequence feature detection"^^xsd:string) +AnnotationAssertion( "genotyping using an Affymetrix chip"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "An assay with the objective to determine a sequence feature of DNA"^^xsd:string) AnnotationAssertion( "should be a defined class where interpretation of data generated by assay qualifies a DNA sequence"@en) AnnotationAssertion( "Person:Bjoern Peters"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "genotyping using an Affymetrix chip"^^xsd:string) -AnnotationAssertion( "DNA sequence feature detection"^^xsd:string) -AnnotationAssertion( "OBI"^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "An assay with the objective to determine a sequence feature of DNA"^^xsd:string) +AnnotationAssertion( "OBI"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA sequence feature detection"@en) SubClassOf( ) -AnnotationAssertion( "High-throughput genotyping of oncogenic human papilloma viruses with MALDI-TOF mass spectrometry. Clin Chem. 2008 Jan;54(1):86-92. Epub 2007 Nov 2.PMID: 17981923"@en) -AnnotationAssertion(rdfs:label "genotyping assay"@en) + +# Class: (genotyping assay) + AnnotationAssertion( "genotyping assay"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "genotype profiling, SNP genotyping"@en) +AnnotationAssertion( "High-throughput genotyping of oncogenic human papilloma viruses with MALDI-TOF mass spectrometry. Clin Chem. 2008 Jan;54(1):86-92. Epub 2007 Nov 2.PMID: 17981923"@en) AnnotationAssertion( ) -AnnotationAssertion( "OBI Biomaterial"^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "genotype profiling, SNP genotyping"@en) +AnnotationAssertion( "OBI Biomaterial"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "genotyping assay"@en) SubClassOf( ) -AnnotationAssertion( "OBI Biomaterial"^^xsd:string) -AnnotationAssertion( "DNA sequence variation detection is a process which aims at finding changes (expansion, amplification, deletion, mutation) in sequence of DNA molecule."@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "DNA sequence variation detection"@en) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) + +# Class: (DNA sequence variation detection) + AnnotationAssertion( "DNA sequence variation detection"^^xsd:string) AnnotationAssertion( "Capturing genomic signatures of DNA sequence variation using a standard anonymous microarray platform. Nucleic Acids Res. 2006;34(18):e121. PMID: 17000641"@en) +AnnotationAssertion( ) +AnnotationAssertion( "DNA sequence variation detection is a process which aims at finding changes (expansion, amplification, deletion, mutation) in sequence of DNA molecule."@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI Biomaterial"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA sequence variation detection"@en) SubClassOf( ) + +# Class: (analyte assay) + AnnotationAssertion( "analyte assay"^^xsd:string) -AnnotationAssertion( "An assay with the objective to capture information about the presence, concentration, or amount of an analyte in an evaluant."@en) +AnnotationAssertion( "example of usage: In lab test for blood glucose, the test is the assay, the blood bears evaluant_role and glucose bears the analyte role. The evaluant is considered an input to the assay and the information entity that records the measurement of glucose concentration the output"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Bjoern Peters, Helen Parkinson, Philippe Rocca-Serra, Alan Ruttenberg"^^xsd:string) +AnnotationAssertion( "An assay with the objective to capture information about the presence, concentration, or amount of an analyte in an evaluant."@en) AnnotationAssertion( "Note: is_realization of some analyte role isn't always true, for example when there is none of the analyte in the evaluant. For the moment we are writing it this way, but when the information ontology is further worked out this will be replaced with a condition discussing the measurement."@en) -AnnotationAssertion( "example of usage: In lab test for blood glucose, the test is the assay, the blood bears evaluant_role and glucose bears the analyte role. The evaluant is considered an input to the assay and the information entity that records the measurement of glucose concentration the output"@en) +AnnotationAssertion( "PERSON:Bjoern Peters, Helen Parkinson, Philippe Rocca-Serra, Alan Ruttenberg"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "analyte assay"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "mass measurement assay"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Helen Parkinson"^^xsd:string) + +# Class: (mass measurement assay) + +AnnotationAssertion( "mass measurement assay"^^xsd:string) AnnotationAssertion( "The patients was weighed and mass was determined to be 47 kilograms"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "a process to determine the mass of an evaluant"@en) +AnnotationAssertion( "Helen Parkinson"^^xsd:string) AnnotationAssertion( "OBI"^^xsd:string) -AnnotationAssertion( "mass measurement assay"^^xsd:string) -AnnotationAssertion(rdfs:comment "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion(rdfs:label "mass measurement assay"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "intra cellular electrophysiology recording"^^xsd:string) -AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) + +# Class: (intra cellular electrophysiology recording) + +AnnotationAssertion( "intra cellular electrophysiology recording"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "An intracellular electrophysiology recording is a process where the recording location of the electrode is intracellular"^^xsd:string) AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) +AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "An intracellular electrophysiology recording is a process where the recording location of the electrode is intracellular"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "intra cellular electrophysiology recording"^^xsd:string) +AnnotationAssertion(rdfs:label "intra cellular electrophysiology recording"^^xsd:string) SubClassOf( ) + +# Class: (packed column) + AnnotationAssertion( "packed column"@en) AnnotationAssertion( ) +AnnotationAssertion( "A packed column is a chromatography column where the particles of the solid stationary phase or the support coated with a liquid stationary phase may fill the whole inside volume of the tube."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "packed column"@en) -AnnotationAssertion( ) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "A packed column is a chromatography column where the particles of the solid stationary phase or the support coated with a liquid stationary phase may fill the whole inside volume of the tube."@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01218"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "packed column"@en) SubClassOf( ) + +# Class: (measure function) + AnnotationAssertion( "measure function"@en) AnnotationAssertion( "A glucometer measures blood glucose concentration, the glucometer has a measure function."^^xsd:string) -AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) -AnnotationAssertion( "PERSON: Helen Parkinson"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Frank Gibson"^^xsd:string) -AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) AnnotationAssertion( "Measure function is a function that is borne by a processed material and realized in a process in which information about some entity is expressed relative to some reference."@en) +AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) +AnnotationAssertion( "PERSON: Helen Parkinson"^^xsd:string) +AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion( "PERSON:Frank Gibson"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "measure function"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "extracellular electrophysiology recording"^^xsd:string) + +# Class: (extracellular electrophysiology recording) + AnnotationAssertion( "extracellular electrophysiology recording"^^xsd:string) -AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) AnnotationAssertion( "The recording of a spike train in the caudate nucleus of a monkey where the electrodes are extra cellular, i.e. not in the neuron"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "An extracellular electrophysiology recording is process where the recording location of the electrode is extracellular and data"^^xsd:string) AnnotationAssertion( "PERSON: Frank Gibson, Helen Parkinson"^^xsd:string) +AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "extracellular electrophysiology recording"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "GROUP: OBI PlanAndPlannedProcess Branch"^^xsd:string) -AnnotationAssertion( ) + +# Class: (material transformation objective) + +AnnotationAssertion( "material transformation objective"^^xsd:string) +AnnotationAssertion( "The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "an objective specifiction that creates an specific output object from input materials."@en) AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) +AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) +AnnotationAssertion( "PERSON: Jennifer Fostel"^^xsd:string) AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "artifact creation objective"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The objective to create a mouse infected with LCM virus. The objective to create a defined solution of PBS."^^xsd:string) -AnnotationAssertion( "PERSON: Jennifer Fostel"^^xsd:string) +AnnotationAssertion( "GROUP: OBI PlanAndPlannedProcess Branch"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "material transformation objective"@en) -AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) -AnnotationAssertion( "material transformation objective"^^xsd:string) -AnnotationAssertion( "an objective specifiction that creates an specific output object from input materials."@en) SubClassOf( ) + +# Class: (manufacturing) + AnnotationAssertion( "manufacturing"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "Manufacturing is a process with the intent to produce a processed material which will have a function for future use. A person or organization (having manufacturer role) is a participant in this process"@en) +AnnotationAssertion( "Manufacturing implies reproducibility and responsibility AR"^^xsd:string) AnnotationAssertion( "This includes a single scientist making a processed material for personal use."@en) -AnnotationAssertion(rdfs:label "manufacturing"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) -AnnotationAssertion( "Manufacturing implies reproducibility and responsibility AR"^^xsd:string) -AnnotationAssertion( "PERSON: Jennifer Fostel"^^xsd:string) AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) +AnnotationAssertion( "PERSON: Jennifer Fostel"^^xsd:string) +AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "GROUP: OBI PlanAndPlannedProcess Branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "manufacturing"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "column chromatography detector"@en) + +# Class: (column chromatography detector) + +AnnotationAssertion( "column chromatography detector"@en) AnnotationAssertion( ) +AnnotationAssertion( "There is a wide range of detectors available for both GC and LC each having their own particular areas of application. In general the more catholic the response, the less sensitive the detector and the most sensitive detectors are those that have a specific response. The performance of all detectors should be properly specified so that the user can determine which is most suitable for a specific application. Such specifications are also essential to compare the performance of different detectors supplied by alternative instrument manufactures. Detector specifications should be presented in a standard form and in standard units, so that detectors can be compared that function on widely different principles."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01077"^^xsd:string) -AnnotationAssertion( "column chromatography detector"@en) -AnnotationAssertion( "There is a wide range of detectors available for both GC and LC each having their own particular areas of application. In general the more catholic the response, the less sensitive the detector and the most sensitive detectors are those that have a specific response. The performance of all detectors should be properly specified so that the user can determine which is most suitable for a specific application. Such specifications are also essential to compare the performance of different detectors supplied by alternative instrument manufactures. Detector specifications should be presented in a standard form and in standard units, so that detectors can be compared that function on widely different principles."@en) AnnotationAssertion( "chromatography detector, defined class/xps"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "column chromatography detector"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01099"^^xsd:string) + +# Class: (organic acid column) + +AnnotationAssertion( "organic acid column"@en) +AnnotationAssertion( ) AnnotationAssertion( "An organic acid column is a chromatography column which enables (reversed-phase) separation of hydrophilic aliphatic and aromatic organic acids with UV detection. Organic acid columns allow retention of polar and apolar organic acids and are hydrolysis resistant."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01099"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "organic acid column"@en) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "organic acid column"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "thermal conductivity detector"@en) + +# Class: (thermal conductivity detector) + +AnnotationAssertion( "thermal conductivity detector"@en) +AnnotationAssertion( ) +AnnotationAssertion( "The most commonly used detector in preparative GC is the thermal conductivity detector (hot wire detector). Even this detector, however, is often too sensitive and has too high a flow impedance. Under such circumstances, the procedure mentioned above must be employed. The eluent from the preparative column is split and a small portion diverted through the detector (sometimes with further dilution with carrier gas to reduce sensitivity)."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "TCD, hot wire detector"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "The most commonly used detector in preparative GC is the thermal conductivity detector (hot wire detector). Even this detector, however, is often too sensitive and has too high a flow impedance. Under such circumstances, the procedure mentioned above must be employed. The eluent from the preparative column is split and a small portion diverted through the detector (sometimes with further dilution with carrier gas to reduce sensitivity)."@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01084"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "thermal conductivity detector"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion(rdfs:label "thermal conductivity detector"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "protein column"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "refactor as defined class"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01238"^^xsd:string) + +# Class: (protein column) + AnnotationAssertion( "protein column"@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "A protein column is a chromatography column used for the separation of complex protein mixtures. Protein columns enable sample desalting, followed by chromatographic separation or fractionation of complex protein samples, e.g. immunodepleted serum or plasma proteins."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01238"^^xsd:string) +AnnotationAssertion( "refactor as defined class"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protein column"@en) SubClassOf( ) + +# Class: (solvent mixer) + AnnotationAssertion( "solvent mixer"@en) +AnnotationAssertion( ) AnnotationAssertion( "A liquid chromatography device that mixes different solvents, e.g. under high pressure and in differrent volumes ranging from 5 ml to 5 L capacity. Powerful magnetic mixers provide vigorous agitation required for high pressure reaction chemistry."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "solvent mixer"@en) -AnnotationAssertion( ) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01072"^^xsd:string) AnnotationAssertion( "check on definition !"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "solvent mixer"@en) SubClassOf( ) -AnnotationAssertion( "This is a measuring method consisting of turning elements in a sample into ions, isolating them according to the ratio between the mass and charge numbers and detecting it electrically."^^xsd:string) -AnnotationAssertion( "mass spectrometry"^^xsd:string) + +# Class: (mass spectrometry assay) + +AnnotationAssertion( "mass spectrometry assay"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "This is a measuring method consisting of turning elements in a sample into ions, isolating them according to the ratio between the mass and charge numbers and detecting it electrically."^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "mass spectrometry"^^xsd:string) AnnotationAssertion( "PRIDE: PRIDE:0000027"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mass spectrometry assay"^^xsd:string) -AnnotationAssertion( "mass spectrometry assay"^^xsd:string) SubClassOf( ) + +# Class: (nano pump system) + +AnnotationAssertion( "nano pump system"@en) +AnnotationAssertion( ) AnnotationAssertion( "A pump system optimized for nano flow chromatography."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01052"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01052"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "nano pump system"@en) -AnnotationAssertion( ) -AnnotationAssertion( "nano pump system"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01064"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "manual injection system"@en) + +# Class: (manual injection system) + AnnotationAssertion( "manual injection system"@en) +AnnotationAssertion( ) AnnotationAssertion( "The traditional hardware system that allows a human to inject a sample into an inlet by hand, using a syringe."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01064"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "manual injection system"@en) SubClassOf( ) -AnnotationAssertion( "chromatography device"@en) + +# Class: (column connector) + +AnnotationAssertion( "column connector"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( "A device that connects two or more columns together in a functional way with leak-tight connection, low dead volume, low thermal mass and high inertness."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01236"^^xsd:string) -AnnotationAssertion( "column connector"@en) +AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "column connector"@en) -AnnotationAssertion( "A device that connects two or more columns together in a functional way with leak-tight connection, low dead volume, low thermal mass and high inertness."@en) SubClassOf( ) -AnnotationAssertion( "An NMR probe that is designed to hold a solid sample."@en) -AnnotationAssertion( "GROUP:"@en) + +# Class: (solid NMR probe) + +AnnotationAssertion( "solid NMR probe"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "An NMR probe that is designed to hold a solid sample."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "NMR device"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400243"^^xsd:string) +AnnotationAssertion( "NMR device"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "solid NMR probe"@en) -AnnotationAssertion( "solid NMR probe"@en) SubClassOf( ) -AnnotationAssertion( "A chromatography detector is a device that locates in the dimensions of space and time, the positions of the components of a mixture that has been subjected to a chromatographic process and thus permits the senses to appreciate the nature of the separation. Defining characteristics are Dynamic Range, Response Index or Linearity, Linear Dynamic range, Detector Response, Detector Noise Level, Detector Sensitivity or Minimum Detectable Concentration, Total System Dispersion, Sensor Dimensions, Detector Time Constant, Pressure Sensitivity, Flow Sensitivity, Operating Temperature Range."@en) -AnnotationAssertion( ) -AnnotationAssertion( "WEB:"@en) + +# Class: (chromatography detector) + AnnotationAssertion( "chromatography detector"@en) -AnnotationAssertion(rdfs:label "chromatography detector"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01012"^^xsd:string) +AnnotationAssertion( "A chromatography detector is a device that locates in the dimensions of space and time, the positions of the components of a mixture that has been subjected to a chromatographic process and thus permits the senses to appreciate the nature of the separation. Defining characteristics are Dynamic Range, Response Index or Linearity, Linear Dynamic range, Detector Response, Detector Noise Level, Detector Sensitivity or Minimum Detectable Concentration, Total System Dispersion, Sensor Dimensions, Detector Time Constant, Pressure Sensitivity, Flow Sensitivity, Operating Temperature Range."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01012"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chromatography detector"@en) SubClassOf( ) + +# Class: (normal phase column) + +AnnotationAssertion( "normal phase column"@en) +AnnotationAssertion( ) AnnotationAssertion( "A normal phase column is a chromatography column in which the stationary phase is more polar than the mobile phase. Its counterpart is the reversed phase column."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01097"^^xsd:string) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "normal phase column"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01097"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "normal phase column"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "normal phase column"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (NMR sample holder) + AnnotationAssertion( "NMR sample holder"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An NMR sample holder is the part of an NMR instrument, which carries the NMR probe,sample tube and the nmr sample."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400212"^^xsd:string) AnnotationAssertion( "NMR device"@en) -AnnotationAssertion( "An NMR sample holder is the part of an NMR instrument, which carries the NMR probe,sample tube and the nmr sample."@en) -AnnotationAssertion(rdfs:label "NMR sample holder"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400212"^^xsd:string) -AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion(rdfs:label "NMR sample holder"@en) SubClassOf( ) + +# Class: (chromatography instrument) + +AnnotationAssertion( "chromatography instrument"@en) +AnnotationAssertion( ) +AnnotationAssertion( "Any instrument that is used to carry out a chromatography experiment."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01262"^^xsd:string) AnnotationAssertion( "chromatography device, defined class?"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chromatography instrument"@en) -AnnotationAssertion( "Any instrument that is used to carry out a chromatography experiment."@en) -AnnotationAssertion( "chromatography instrument"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "continuous wave NMR instrument"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "NMR instrument"@en) + +# Class: (continuous wave NMR instrument) + AnnotationAssertion( "continuous wave NMR instrument"@en) +AnnotationAssertion( ) AnnotationAssertion( "Continuous wave NMR spectrometers are similar to optical spectrometers, but the sample is held in a strong magnetic field, where the frequency of the source is slowly scanned (in some instruments, the source frequency is held constant, and the field is scanned)."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400283"^^xsd:string) +AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "continuous wave NMR instrument"@en) SubClassOf( ) + +# Class: (fourier transformation NMR instrument) + +AnnotationAssertion( "fourier transformation NMR instrument"@en) +AnnotationAssertion( ) AnnotationAssertion( "In fourier transformation NMR, all frequencies in a spectrum are irradiated simultaneously with a radio frequency pulse. Following the pulse, the nuclei return to thermal equilibrium. A time domain emission signal is recorded by the instrument as the nuclei relax. A frequency domain spectrum is obtained by Fourier transformation."@en) -AnnotationAssertion( "NMR instrument"@en) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400284"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "fourier transformation NMR instrument"@en) +AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fourier transformation NMR instrument"@en) SubClassOf( ) + +# Class: (nitrogen phosphorous detector) + AnnotationAssertion( "nitrogen phosphorous detector"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "nitrogen phosphorous detector"@en) AnnotationAssertion( ) AnnotationAssertion( "The nitrogen phosphorus detector (NPD) (sometimes called the thermionic detector) is a very sensitive, specific detector the design of which, is based on the FID. Physically the sensor appears to be very similar to the FID but, in fact, operates on an entirely different principle. The nitrogen phosphorous detector (sometimes called the thermionic detector) is a very sensitive but specific detector that responds almost exclusively to nitrogen and phosphorous compounds. It is based on the flame ionization detector but differs in that it contains a rubidium or cesium silicate (glass) bead situated in a heater coil, a little distance from the hydrogen flame. If the detector is to respond to both nitrogen and phosphorous then the hydrogen flow should be minimal so that the gas does not ignite at the jet. If the detector is to respond to phosphorous only, a large flow of hydrogen is used which is burnt at the jet. The heated bead emits electrons by thermionic emission. These electrons are collected under a potential of a few volts by an appropriately placed anode, and provides a background current. When a solute containing nitrogen or phosphorous is eluted from the column, the partially combusted nitrogen and phosphorous materials are adsorbed on the surface of the bead. The adsorbed material reduces the work function of the surface and, as consequence, the emission of electrons is increased which raises the current collected at the electrode. The sensitivity of the detector to phosphorous is about 10-12 gram per ml and for nitrogen about 10-11 gram per ml at a signal to nose ratio of 2. The alkali bead as a finite life and needs regular replacement."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01089"^^xsd:string) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01089"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen phosphorous detector"@en) SubClassOf( ) -AnnotationAssertion( "A cation exchange column is a chromatography column that is used in cation exchange chromatography."@en) + +# Class: (cation exchange column) + AnnotationAssertion( "cation exchange column"@en) -AnnotationAssertion(rdfs:label "cation exchange column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01096"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A cation exchange column is a chromatography column that is used in cation exchange chromatography."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01096"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cation exchange column"@en) SubClassOf( ) -AnnotationAssertion( "NMR device"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400280"^^xsd:string) -AnnotationAssertion( "An NMR probe designed to allow the direct detection of acquisition nuclei."@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) + +# Class: (direct detection NMR probe) + AnnotationAssertion( "direct detection NMR probe"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An NMR probe designed to allow the direct detection of acquisition nuclei."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "direct detection NMR probe"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400280"^^xsd:string) +AnnotationAssertion( "NMR device"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "direct detection NMR probe"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (rapid resolution column) + AnnotationAssertion( "rapid resolution column"@en) -AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( ) AnnotationAssertion( "A rapid resolution column is a chromatography column as marketed by Agilent, which is used with a rapid resolution cartridge to ensure a fast chromatography process with good separation resolution."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "rapid resolution column"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01102"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rapid resolution column"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (liquid chromatography autosampler) + AnnotationAssertion( "liquid chromatography autosampler"@en) AnnotationAssertion( ) +AnnotationAssertion( "Designed to perform capillary LC with injection of sample volumes ranging from nL to L."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01061"^^xsd:string) -AnnotationAssertion( "Designed to perform capillary LC with injection of sample volumes ranging from nL to L."@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "liquid chromatography autosampler"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "vacuum degasser"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A degassing system used for degassing solvents in liquid chromatography. Dissolved gasses, usually nitrogen and oxygen from the air, tend to be evolved in the mobile phase as the pressure is reduced when the mobile phase leaves the liquid chromatography column and enters the detector. Gasses in the mobile phase in the detector can produce completely unacceptable noise and, thus, must be removed. The dissolved gasses were originally removed under vacuum but, unfortunately, are soon replaced if the solvent is left in contact with air at atmospheric pressure. For this reason degassing is now usually carried out by bubbling helium through the mobile phase reservoirs. Secondly, vacuum is used in the thermionic detector. This consists of a device, very similar in design to the thermionic valve which is attached to a vacuum and a small quantity of the eluent from a gas chromatography column allowed to bleed through it. Helium is used as the carrier gas. The presence of solute vapor causes the thermionic current to fall. This type of detector tends to become contaminated rather readily."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01053"^^xsd:string) + +# Class: (vacuum degasser) + +AnnotationAssertion( "vacuum degasser"@en) AnnotationAssertion( ) +AnnotationAssertion( "A degassing system used for degassing solvents in liquid chromatography. Dissolved gasses, usually nitrogen and oxygen from the air, tend to be evolved in the mobile phase as the pressure is reduced when the mobile phase leaves the liquid chromatography column and enters the detector. Gasses in the mobile phase in the detector can produce completely unacceptable noise and, thus, must be removed. The dissolved gasses were originally removed under vacuum but, unfortunately, are soon replaced if the solvent is left in contact with air at atmospheric pressure. For this reason degassing is now usually carried out by bubbling helium through the mobile phase reservoirs. Secondly, vacuum is used in the thermionic detector. This consists of a device, very similar in design to the thermionic valve which is attached to a vacuum and a small quantity of the eluent from a gas chromatography column allowed to bleed through it. Helium is used as the carrier gas. The presence of solute vapor causes the thermionic current to fall. This type of detector tends to become contaminated rather readily."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "vacuum degasser"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01053"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vacuum degasser"@en) SubClassOf( ) + +# Class: (capillary column) + AnnotationAssertion( "capillary column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01066"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A capillary column is a thin tube with a small inner diameter, usually around 0.5 mm."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "capillary column"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01066"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion(rdfs:label "capillary column"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "sample inlet"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01044"^^xsd:string) + +# Class: (sample inlet) + +AnnotationAssertion( "sample inlet"@en) +AnnotationAssertion( ) AnnotationAssertion( "The column inlet (or injector) provides the means to introduce a sample into a continuous flow of carrier gas. The inlet is a piece of hardware attached to the column head."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01044"^^xsd:string) AnnotationAssertion( "chromatography device"@en) -AnnotationAssertion( "sample inlet"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sample inlet"@en) SubClassOf( ) + +# Class: (NMR tube washing system) + AnnotationAssertion( "NMR tube washing system"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) AnnotationAssertion( "An automatic cleaning system for NMR tubes that removes previous probe and sample residues in order to allow for tube recycling."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400204"^^xsd:string) -AnnotationAssertion(rdfs:label "NMR tube washing system"@en) AnnotationAssertion( "NMR instrument"@en) -AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "NMR tube washing system"@en) SubClassOf( ) + +# Class: (NMR console) + +AnnotationAssertion( "NMR console"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "A component of an NMR instrument that controls the activities of the other components."@en) -AnnotationAssertion( "NMR console"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400015"^^xsd:string) AnnotationAssertion( "NMR instrument, TODO: same as or part of acquisition computer?"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) AnnotationAssertion(rdfs:label "NMR console"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (dual loop autosampler) + AnnotationAssertion( "dual loop autosampler"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01063"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A dual loop autosampler is an autosampler that is designed for handling both analytical (10 mL/min flow rate) to preparative scale sample purification (100 mL/min flow rate)."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01063"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "dual loop autosampler"@en) -AnnotationAssertion( "A dual loop autosampler is an autosampler that is designed for handling both analytical (10 mL/min flow rate) to preparative scale sample purification (100 mL/min flow rate)."@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01079"^^xsd:string) -AnnotationAssertion(rdfs:label "variable wavelength detector"@en) -AnnotationAssertion( "A chromatography detector, that can detect signals within a certain range at user-defined wavelengths."@en) + +# Class: (variable wavelength detector) + AnnotationAssertion( "variable wavelength detector"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A chromatography detector, that can detect signals within a certain range at user-defined wavelengths."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01079"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "variable wavelength detector"@en) SubClassOf( ) -AnnotationAssertion( "GROUP:"@en) + +# Class: (sample injection system) + +AnnotationAssertion( "sample injection system"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An automated chromatography system that injects the sample into the chromatography columns in order to increase speed and minimize human involvement in the purification process for better reproducibility."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01057"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "chromatography device"@en) -AnnotationAssertion( "An automated chromatography system that injects the sample into the chromatography columns in order to increase speed and minimize human involvement in the purification process for better reproducibility."@en) -AnnotationAssertion( "sample injection system"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sample injection system"@en) SubClassOf( ) + +# Class: (multiple wavelength detector) + +AnnotationAssertion( "multiple wavelength detector"@en) +AnnotationAssertion( ) AnnotationAssertion( "A chromatography detector, that can detect many discrete wavelengths in parallel and produces a multiple wavelength chromatographic profile."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01078"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "multiple wavelength detector"@en) -AnnotationAssertion( "multiple wavelength detector"@en) SubClassOf( ) -AnnotationAssertion( "The selective determination of aromatic hydrocarbons or organo-heteroatom species is the job of the photoionization detector (PID). This device uses ultraviolet light as a means of ionizing an analyte exiting from a GC column. The ions produced by this process are collected by electrodes. The current generated is therefore a measure of the analyte concentration. f the amount of ionization is reproducible for a given compound, pressure, and light source then the current collected at the PID's reaction cell electrodes is reproducibly proportional to the amount of that compound entering the cell. The reason why the compounds that are routinely analyzed are either aromatic hydrocarbons or heteroatom containing compounds (like organosulfur or organophosphorus species) is because these species have ionization potentials (IP) that are within reach of commercially available UV lamps. The available lamp energies range from 8.3 to 11.7 ev, that is, lambda max ranging from 150 nm to 106 nm. Although most PIDs have only one lamp, lamps in the PID are exchanged depending on the compound selectivity required in the analysis."@en) -AnnotationAssertion(rdfs:label "photoionization detector"@en) + +# Class: (photoionization detector) + AnnotationAssertion( "photoionization detector"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01090"^^xsd:string) +AnnotationAssertion( "The selective determination of aromatic hydrocarbons or organo-heteroatom species is the job of the photoionization detector (PID). This device uses ultraviolet light as a means of ionizing an analyte exiting from a GC column. The ions produced by this process are collected by electrodes. The current generated is therefore a measure of the analyte concentration. f the amount of ionization is reproducible for a given compound, pressure, and light source then the current collected at the PID's reaction cell electrodes is reproducibly proportional to the amount of that compound entering the cell. The reason why the compounds that are routinely analyzed are either aromatic hydrocarbons or heteroatom containing compounds (like organosulfur or organophosphorus species) is because these species have ionization potentials (IP) that are within reach of commercially available UV lamps. The available lamp energies range from 8.3 to 11.7 ev, that is, lambda max ranging from 150 nm to 106 nm. Although most PIDs have only one lamp, lamps in the PID are exchanged depending on the compound selectivity required in the analysis."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "PID"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01090"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "photoionization detector"@en) SubClassOf( ) + +# Class: (gas generator) + AnnotationAssertion( "gas generator"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01033"^^xsd:string) -AnnotationAssertion( "gas chromatography equipment"@en) -AnnotationAssertion(rdfs:label "gas generator"@en) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "An instrument that generates gases for use with the gas chromatograph. Previously gas was obtained from gas tanks or gas cylinders. However, over the past decade the use of gas generators have become more popular as it avoids having gases at high pressure in the laboratory which is perceived by some as potentially dangerous. In addition, the use of a hydrogen generator avoids the use of a cylinder of hydrogen at high pressure which is also perceived by some as a serious fire hazard despite the fact that they have been used in laboratories, quite safely for nearly a century."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01033"^^xsd:string) +AnnotationAssertion( "gas chromatography equipment"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gas generator"@en) SubClassOf( ) + +# Class: (column jacket) + AnnotationAssertion( "column jacket"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "A column jacket is a piece of column chromatography equipment that covers a column in order to ensure thermoisolation and create a controllable thermostatic microenvironment."@en) -AnnotationAssertion(rdfs:label "column jacket"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01276"^^xsd:string) AnnotationAssertion( "chromatography device"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01276"^^xsd:string) +AnnotationAssertion(rdfs:label "column jacket"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (electron capture detector) + +AnnotationAssertion( "electron capture detector"@en) +AnnotationAssertion( ) AnnotationAssertion( "The electron capture detector is a GC detector that uses a radioactive Beta emitter (electrons) to ionize some of the carrier gas and produce a current between a biased pair of electrodes. When organic molecules that contain electronegative functional groups, such as halogens, phosphorous, and nitro groups pass by the detector, they capture some of the electrons and reduce the current measured between the electrodes."@en) -AnnotationAssertion(rdfs:label "electron capture detector"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "ECD"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "electron capture detector"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01085"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "ECD"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electron capture detector"@en) SubClassOf( ) + +# Class: (reversed phase column) + AnnotationAssertion( "reversed phase column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01106"^^xsd:string) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "reversed phase column"@en) AnnotationAssertion( ) AnnotationAssertion( "A reversed phase column is a chromatography column in which the mobile phase is more polar than the stationary phase. Its counterpart is the normal phase column."@en) -AnnotationAssertion( ) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01106"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "reversed phase column"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "injector lubricant"@en) + +# Class: (injector lubricant) + +AnnotationAssertion( "injector lubricant"@en) AnnotationAssertion( ) +AnnotationAssertion( "A lubricant used in liquid chromatography that eases sample injector penetration."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01118"^^xsd:string) -AnnotationAssertion( "A lubricant used in liquid chromatography that eases sample injector penetration."@en) AnnotationAssertion( ) -AnnotationAssertion( "injector lubricant"@en) +AnnotationAssertion(rdfs:label "injector lubricant"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Person: Bjoern Peters"^^xsd:string) + +# Class: (isolation of cell population) + AnnotationAssertion( "isolation of cell population"^^xsd:string) -AnnotationAssertion( "a process in which a population of cells with certain characteristics is isolated from a larger population"^^xsd:string) AnnotationAssertion( "removing CD4+ cells from PBMCs using magnetic beads."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "a process in which a population of cells with certain characteristics is isolated from a larger population"^^xsd:string) +AnnotationAssertion( "Person: Bjoern Peters"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "isolation of cell population"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "WEB:"@en) + +# Class: (chromatofocusing column) + +AnnotationAssertion( "chromatofocusing column"@en) +AnnotationAssertion( ) AnnotationAssertion( "A chromatofocusing column is a chromatography column in which a resin is equilibrated at one pH and eluted at a second pH. The use of a weak ion-exchange resin causes a pH gradient to be formed at the solvent front owing to the buffering action of the resin. This pH gradient in turn leads to an ordering of proteins by isoelectric point. Molecules of charge sign opposite the resin bind; those of charge sign like the resin do not bind."@en) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01209"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chromatofocusing column"@en) -AnnotationAssertion( ) -AnnotationAssertion( "chromatofocusing column"@en) SubClassOf( ) + +# Class: (NMR probe) + AnnotationAssertion( "NMR probe"@en) -AnnotationAssertion( "NMR instrument"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400014"^^xsd:string) -AnnotationAssertion(rdfs:label "NMR probe"@en) +AnnotationAssertion( ) AnnotationAssertion( "Part of an NMR instrument that detects the signals emitted from a sample. No single probe can perform the full range of experiments, and probes that are designed to perform more than one type of measurement usually suffer from performance compromises. The probe represents a rather fragile single point of failure that can render an NMR system completely unusable if the probe is dropped or otherwise damaged. Probes are usually characterised by Sample diameter and Frequency.\\n alt The instrument that transmits and receives radiofrequency to and from the NMR sample."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400014"^^xsd:string) +AnnotationAssertion( "NMR instrument"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "NMR probe"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400185"^^xsd:string) -AnnotationAssertion(rdfs:label "NMR magnet"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (NMR magnet) + AnnotationAssertion( "NMR magnet"@en) +AnnotationAssertion( ) AnnotationAssertion( "A magnet which induces a certain frequency (MHz) and which has a certain bore diameter.\\n alt The NMR signal is a natural physical property of the certain atomic nuclei but it can only be detected with an external magnetic field. A magnet is a fundamental part of an NMR instrument which induces an electromagnetic force field (RF pulse) and by this excites and aligns the spins of the electrons of the NMR acquisition nucleus. It is usually a big (superconducting) electromagnet which is cooled by liquid helium and can be adjusted to a frequency between 200 and 950 MHz. The magnetic field strength is measured in Tesla or Gauss."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400185"^^xsd:string) AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "NMR magnet"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01261"^^xsd:string) + +# Class: (trap column) + AnnotationAssertion( "trap column"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) AnnotationAssertion( "A trap column is a chromatography column which is used prior to a, e.g. mass spectrometry, separation to clean up or concentrate controlled amounts of samples prior to elution to a detector."@en) -AnnotationAssertion(rdfs:label "trap column"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01261"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "trap column"@en) SubClassOf( ) + +# Class: (flow probe) + AnnotationAssertion( "flow probe"@en) -AnnotationAssertion( "NMR device"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400131"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "An NMR probe that allows the automatized flow-through of a sample. The sample is aspirated via a syringe pump into the Flow probe, the NMR spectrum is acquired and when the experiment is complete, the sample is returned to back to an external source (well plate) or flushed to waste. Sometimes pulsed field gradients (PFG) can be established in flow probes."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400131"^^xsd:string) +AnnotationAssertion( "NMR device"@en) AnnotationAssertion( ) -AnnotationAssertion( "An NMR probe that allows the automatized flow-through of a sample. The sample is aspirated via a syringe pump into the Flow probe, the NMR spectrum is acquired and when the experiment is complete, the sample is returned to back to an external source (well plate) or flushed to waste. Sometimes pulsed field gradients (PFG) can be established in flow probes."@en) AnnotationAssertion(rdfs:label "flow probe"@en) SubClassOf( ) -AnnotationAssertion( "adapted from Wikipedia"^^xsd:string) + +# Class: (clinical chemistry assay) + +AnnotationAssertion( "clinical chemistry assay"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "a process which uses analytical methods to produce measurements and data on the concentration of a chemical parameters (analytes) present in a bodily fluid collected from an organism."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "detection of analyte in blood sample"^^xsd:string) -AnnotationAssertion( "chemical pathology"^^xsd:string) -AnnotationAssertion(rdfs:label "clinical chemistry assay"^^xsd:string) -AnnotationAssertion( "clinical chemistry assay"^^xsd:string) AnnotationAssertion( "3/26/09: There needs to be a restriction set that specifies which type of evaluants are used in the assay, somewhere along the lines of 'sample derived of bodily fluid'"^^xsd:string) AnnotationAssertion( "Person: Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "chemical pathology"^^xsd:string) +AnnotationAssertion( "detection of analyte in blood sample"^^xsd:string) +AnnotationAssertion( "adapted from Wikipedia"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "clinical chemistry assay"^^xsd:string) SubClassOf( ) + +# Class: (flame ionization detector) + +AnnotationAssertion( "flame ionization detector"@en) AnnotationAssertion( ) AnnotationAssertion( "A flame ionization detector is a GC detector that consist of a hydrogen/air flame and a collector plate which are normally heated independently of the chromatographic oven. Heating is necessary in order to prevent condensation of water generated by the flame and also to prevent any hold-up of solutes as they pass from the column to the flame. There is an electrode above the flame to collect the ions formed at a hydrogen/air flame. The number of ions hitting the collector is measured and a signal is generated. Flame ionization detectors are most widely used and generally applicable for gas chromatography and hence is used for routine and general purpose analysis. It is easy to use but destructive of the sample."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01197"^^xsd:string) -AnnotationAssertion( "flame ionization detector"@en) AnnotationAssertion( "FID"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01197"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "flame ionization detector"@en) SubClassOf( ) -AnnotationAssertion( "A vial is a cylindrical container often made from glass tubing."@en) -AnnotationAssertion(rdfs:label "vial"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) + +# Class: (vial) + AnnotationAssertion( "vial"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01117"^^xsd:string) +AnnotationAssertion( "A vial is a cylindrical container often made from glass tubing."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01117"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vial"@en) SubClassOf( ) -AnnotationAssertion( "MAS rotor"@en) + +# Class: (magic angle spinning rotor) + AnnotationAssertion( "magic angle spinning rotor"@en) +AnnotationAssertion( ) AnnotationAssertion( "A rotor device that holds the NMR sample and enables the adjustment of the orientation of the rotation axis for a sample in a NMR instrument in the magic angle."@en) -AnnotationAssertion( "NMR instrument"@en) -AnnotationAssertion(rdfs:label "magic angle spinning rotor"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400130"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion( "MAS rotor"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400130"^^xsd:string) +AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "magic angle spinning rotor"@en) SubClassOf( ) + +# Class: (splitless GC injector) + +AnnotationAssertion( "splitless GC injector"@en) AnnotationAssertion( ) AnnotationAssertion( "Injected sample enters column immediately (while split valve to split vent is closed). Here a sample is introduced into a heated small chamber via a syringe through a septum - the heat facilitates volatilization of the sample and sample matrix. The carrier gas then either sweeps the entirety (splitless mode) or a portion (split mode) of the sample into the column. In split mode, a part of the sample/carrier gas mixture in the injection chamber is exhausted through the split vent."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "splitless GC injector"@en) AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01060"^^xsd:string) -AnnotationAssertion( "splitless GC injector"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "splitless GC injector"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "preparative autosampler"@en) -AnnotationAssertion( ) + +# Class: (preparative autosampler) + AnnotationAssertion( "preparative autosampler"@en) +AnnotationAssertion( ) AnnotationAssertion( "For preparative LC with injection of sample volumes ranging from L to mL ranges."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01062"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "preparative autosampler"@en) SubClassOf( ) -AnnotationAssertion( "NMR probe"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "flow high resolution probe"@en) -AnnotationAssertion( "flow HR-probe"@en) -AnnotationAssertion( ) + +# Class: (flow high resolution probe) + AnnotationAssertion( "flow high resolution probe"@en) +AnnotationAssertion( ) AnnotationAssertion( "Hyphenated analytical techniques combining mass spectrometry and chromatography are well-established laboratory tools. The combination of chromatography and NMR has also made its way into the analytical laboratory. Further developments even combine all three techniques into an LC-NMR/NMR-MS system. The use of solid phase extraction provides an efficient interface between chromatography and NMR with demands for special type of flow probes."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "flow HR-probe"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400195"^^xsd:string) +AnnotationAssertion( "NMR probe"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "flow high resolution probe"@en) SubClassOf( ) + +# Class: (liquid chromatography valve) + +AnnotationAssertion( "liquid chromatography valve"@en) +AnnotationAssertion( ) AnnotationAssertion( "A sample valve that must be able to sustain pressures up to 10,000 p.s.i., although it is most likely to operate on a continuous basis, at pressures of 3,000 p.s.i. or less. The higher the operating pressure the tighter the valve seating surfaces must be forced together to eliminate any leak. It follows that any abrasive material, however fine, that passes into the valve can cause the valve seating to become scored each time it is rotated which will ultimately lead to leaks. This will cause the sample size to vary between samples and eventually affect the accuracy of the analysis. It follows that any solid material must be carefully removed from any sample before filling the valve. The sample volume of an internal loop valve is situated in the connecting slot of the valve rotor and can be used only for relatively small sample volumes. Internal sample loop valves provide samples with volumes ranging from 0.1 ml to about 0.5 ml. Valve operation is shown in figure 6. The left-hand side diagram shows the load position. The sample occupies the rotor slot and has been filled by passing the sample from an appropriate syringe through the rotor slot to waste. While loading the sample, the mobile phase supply is passed through the valve directly to the column. To place the sample onto the column, the valve is then rotated and the valve slot containing the sample is now placed between the solvent supply and the column. As a result, the sample is passed into the column by the flow of solvent."@en) -AnnotationAssertion( ) -AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "liquid chromatography valve"@en) -AnnotationAssertion(rdfs:label "liquid chromatography valve"@en) -AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01110"^^xsd:string) +AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "liquid chromatography valve"@en) SubClassOf( ) -AnnotationAssertion( "chromatography device, check on definition !"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01055"^^xsd:string) -AnnotationAssertion( ) + +# Class: (column cartridge) + AnnotationAssertion( "column cartridge"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "A device that binds the chromatography column and additional connector elements and / or valves or syringes into one physical unity for further processing."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01055"^^xsd:string) +AnnotationAssertion( "chromatography device, check on definition !"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "column cartridge"@en) SubClassOf( ) + +# Class: (affinity column) + AnnotationAssertion( "affinity column"@en) AnnotationAssertion( ) AnnotationAssertion( "An affinity column is a chromatography column that is used in affinity chromatography. Differences in the affinity of molecules to be separated to a stationary phase are used for discriminate retention."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "affinity column"@en) -AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01094"^^xsd:string) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01094"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "affinity column"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01104"^^xsd:string) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (gel filtration column) + +AnnotationAssertion( "gel filtration column"@en) AnnotationAssertion( ) +AnnotationAssertion( "A Gel filtration column is a chromatography column for size-exclusion chromatography, in which the stationary phase is a gel. The main application of gel filtration chromatography is the fractionation of proteins and other water-soluble polymers."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "gel filtration column"@en) -AnnotationAssertion(rdfs:label "gel filtration column"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01104"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A Gel filtration column is a chromatography column for size-exclusion chromatography, in which the stationary phase is a gel. The main application of gel filtration chromatography is the fractionation of proteins and other water-soluble polymers."@en) +AnnotationAssertion(rdfs:label "gel filtration column"@en) SubClassOf( ) + +# Class: (fraction collector) + +AnnotationAssertion( "fraction collector"@en) +AnnotationAssertion( ) AnnotationAssertion( "A fraction detector is a device that allows regular or specified samples to be taken from a column eluate and stored in a retrievable form. The storage vessels are usually small sample tubes or vials that are oriented in a rotating disk or in a moving belt, there movement usually being controlled by a microprocessor. On receiving a signal from the microprocessor, the next vial is placed under the column outlet and the eluate collected until receiving another signal from the computer. Once the properties of the chromatogram that describes the separation has been ascertained, then the collection program can be defined. The fractions can be collected on a basis of time either at regular intervals or a specific times to collect specific peaks. Alternatively the fractions can be collected by monitoring the detector output and when a peak starts to elute the fraction collector is activated and the peak collected in a specific vial. When the peak returns to base line the column eluate is then directed to waste until the next peak starts eluting. Fraction collectors are in common use with most liquid chromatographs. They are used to collect samples for further purification, subsequent examination by spectroscopic techniques or for biological or organoleptic testing."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion(rdfs:label "fraction collector"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01073"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "fraction collector"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion(rdfs:label "fraction collector"@en) SubClassOf( ) -AnnotationAssertion( "CNV analysis"^^xsd:string) + +# Class: (copy number variation profiling) + +AnnotationAssertion( "copy number variation profiling"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "copy number variation profiling is a process which aims to provide information about lost or amplified genomic regions of DNA by comparing genomic DNA originated from tissues from same or different individuals using specific techniques such as CGH, array CGH, SNP genotyping."^^xsd:string) -AnnotationAssertion(rdfs:label "copy number variation profiling"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "copy number variation profiling"^^xsd:string) +AnnotationAssertion( "CNV analysis"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "copy number variation profiling"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "A solvent filter that sits between the pump and the injection valve that prevents dust particles, general debris and, to some extent, bacteria from entering the chromatography system. Contaminants can interfere with the low-pressure gradient former or the pump and particles entering valves may interfere with the proper function. The result could cause an increased baseline noise, non-repeatable gradient forming, unreliable flow rate or other interferences. Solvent in-line filters are low-pressure filters and will allow a high flow rate due to a large surface area and large porosity."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01123"^^xsd:string) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion(rdfs:label "in-line filter"@en) + +# Class: (in-line filter) + AnnotationAssertion( "in-line filter"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A solvent filter that sits between the pump and the injection valve that prevents dust particles, general debris and, to some extent, bacteria from entering the chromatography system. Contaminants can interfere with the low-pressure gradient former or the pump and particles entering valves may interfere with the proper function. The result could cause an increased baseline noise, non-repeatable gradient forming, unreliable flow rate or other interferences. Solvent in-line filters are low-pressure filters and will allow a high flow rate due to a large surface area and large porosity."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01123"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "in-line filter"@en) SubClassOf( ) + +# Class: (imaging NMR probe) + AnnotationAssertion( "imaging NMR probe"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "NMR device"@en) -AnnotationAssertion( "An NMR probe that is designed for generating pictures from sample states via NMR imaging."@en) -AnnotationAssertion(rdfs:label "imaging NMR probe"@en) AnnotationAssertion( ) +AnnotationAssertion( "An NMR probe that is designed for generating pictures from sample states via NMR imaging."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400244"^^xsd:string) +AnnotationAssertion( "NMR device"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "imaging NMR probe"@en) SubClassOf( ) + +# Class: (gas chromatography equipment) + AnnotationAssertion( "gas chromatography equipment"@en) +AnnotationAssertion( ) +AnnotationAssertion( "Any device used in a gas chromatography experiment."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01030"^^xsd:string) AnnotationAssertion( "will become defined class/xps"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "gas chromatography equipment"@en) -AnnotationAssertion( "Any device used in a gas chromatography experiment."@en) SubClassOf( ) -AnnotationAssertion( "GROUP:"@en) + +# Class: (syringe filter) + +AnnotationAssertion( "syringe filter"@en) AnnotationAssertion( ) AnnotationAssertion( "A small membrane filter of defined pore size, that filters samples from a syringe."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01122"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "syringe filter"@en) AnnotationAssertion(rdfs:label "syringe filter"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "column compartment"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01068"^^xsd:string) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "For chromatography analyses, the ability to maintain a stable column environment regardless of ambient temperature fluctuations is critical for maintaining retention time precision. In order to ensure such stable conditions at different chromatography steps a column compartment can be installed that ensures e.g. stable temperature of the column in a given step."@en) + +# Class: (column compartment) + AnnotationAssertion( "column compartment"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "For chromatography analyses, the ability to maintain a stable column environment regardless of ambient temperature fluctuations is critical for maintaining retention time precision. In order to ensure such stable conditions at different chromatography steps a column compartment can be installed that ensures e.g. stable temperature of the column in a given step."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01068"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "column compartment"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01051"^^xsd:string) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (capillary pump system) + AnnotationAssertion( "capillary pump system"@en) -AnnotationAssertion(rdfs:label "capillary pump system"@en) +AnnotationAssertion( ) AnnotationAssertion( "A pump system optimized for capillary chromatography."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01051"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "capillary pump system"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (evaporative light scattering detector) + AnnotationAssertion( "evaporative light scattering detector"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) AnnotationAssertion( "The evaporative light scattering detector, as its name implies, utilizes a spray that continuously atomizes the column eluent into small droplets. These droplets are allowed to evaporate, leaving the solutes as fine particulate matter suspended in the atomizing gas."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01082"^^xsd:string) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion(rdfs:label "evaporative light scattering detector"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01082"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "evaporative light scattering detector"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "column cartridger"@en) + +# Class: (column cartridger) + +AnnotationAssertion( "column cartridger"@en) +AnnotationAssertion( ) AnnotationAssertion( "A chromatography device where the column cartridge is inserted into and stabilised."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "column cartridger"@en) -AnnotationAssertion( ) AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01054"^^xsd:string) AnnotationAssertion( "check on definition !"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "column cartridger"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "nitrogen generator"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01034"^^xsd:string) -AnnotationAssertion( ) + +# Class: (nitrogen generator) + AnnotationAssertion( "nitrogen generator"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "A gas generator that generates nitrogen gas."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "A gas generator that generates nitrogen gas."@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01034"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nitrogen generator"@en) SubClassOf( ) + +# Class: (needle assembly) + +AnnotationAssertion( "needle assembly"@en) AnnotationAssertion( ) +AnnotationAssertion( "The needle assembly attached to the autosampler, comprises the injector needle that feeds a sample or carrier gas into the inlet"@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01065"^^xsd:string) -AnnotationAssertion( "The needle assembly attached to the autosampler, comprises the injector needle that feeds a sample or carrier gas into the inlet"@en) AnnotationAssertion( "chromatography device, check on definition !"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "needle assembly"@en) -AnnotationAssertion( "needle assembly"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "reverse transcription polymerase chain reaction"^^xsd:string) -AnnotationAssertion( "reverse transcribe pcr is a process which allow amplification of cDNA during a pcr reaction while the cDNA results from a retrotranscription of messenger RNA isolated from a material entity."^^xsd:string) + +# Class: (reverse transcribed polymerase chain reaction) + AnnotationAssertion( "reverse transcribed polymerase chain reaction"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "reverse transcribe pcr is a process which allow amplification of cDNA during a pcr reaction while the cDNA results from a retrotranscription of messenger RNA isolated from a material entity."^^xsd:string) +AnnotationAssertion( "3/21/10, BP:Modified definition to clarify that this is not the assay, but the material transformation"^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "RT-PCR"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "reverse transcription polymerase chain reaction"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "reverse transcribed polymerase chain reaction"^^xsd:string) -AnnotationAssertion( "3/21/10, BP:Modified definition to clarify that this is not the assay, but the material transformation"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "gas chromatography equipment"@en) + +# Class: (gas chromatography oven) + +AnnotationAssertion( "gas chromatography oven"@en) +AnnotationAssertion( ) AnnotationAssertion( "A gas chromatography oven is an oven with a heated connection between the GC and the MS instrument in a GCMS-analysis, that keeps compounds in the gas phase as they leave the GC oven."@en) -AnnotationAssertion(rdfs:label "gas chromatography oven"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01039"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) -AnnotationAssertion( "gas chromatography oven"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01039"^^xsd:string) +AnnotationAssertion( "gas chromatography equipment"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gas chromatography oven"@en) SubClassOf( ) -AnnotationAssertion( "NMR instrument"@en) + +# Class: (autosampler) + +AnnotationAssertion( "autosampler"@en) AnnotationAssertion( ) AnnotationAssertion( "An optional part of an NMR instrument used to hold samples prior to NMR analysis and that sequentially loads these samples into the analytical part of the NMR instrument. \\n alt The autosampler is an automatic sample changer device."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "autosampler"@en) -AnnotationAssertion(rdfs:label "autosampler"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400002"^^xsd:string) +AnnotationAssertion( "NMR instrument"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion(rdfs:label "autosampler"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01049"^^xsd:string) + +# Class: (isocratic pump system) + AnnotationAssertion( "isocratic pump system"@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "A pump system optimized for isocratic chromatography."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01049"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "isocratic pump system"@en) SubClassOf( ) + +# Class: (flash pump system) + +AnnotationAssertion( "flash pump system"@en) +AnnotationAssertion( ) AnnotationAssertion( "Any pump system used in flash column chromatography to push the solvent through the column. Better flow rates can be achieved by using a pump or by using compressed gas (e.g. air, nitrogen, or argon) to push the solvent through the column (flash column chromatography)."@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01048"^^xsd:string) -AnnotationAssertion( "flash pump system"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "flash pump system"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400242"^^xsd:string) -AnnotationAssertion( ) + +# Class: (liquid NMR probe) + AnnotationAssertion( "liquid NMR probe"@en) -AnnotationAssertion(rdfs:label "liquid NMR probe"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "An NMR probe that is designed to hold a liquid sample."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400242"^^xsd:string) AnnotationAssertion( "NMR device"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "liquid NMR probe"@en) SubClassOf( ) + +# Class: (ion exchange column) + +AnnotationAssertion( "ion exchange column"@en) AnnotationAssertion( ) +AnnotationAssertion( "An ion exchange column is a chromatography column that is used in ion exchange chromatography and anion or cation exchange resins to enable separation."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01105"^^xsd:string) -AnnotationAssertion( "ion exchange column"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "ion exchange column"@en) -AnnotationAssertion( "An ion exchange column is a chromatography column that is used in ion exchange chromatography and anion or cation exchange resins to enable separation."@en) SubClassOf( ) -AnnotationAssertion( "An anion trap column is a trap column and ion-exchange column which contains cationic anion-exchange resins."@en) + +# Class: (anion trap column) + +AnnotationAssertion( "anion trap column"@en) AnnotationAssertion( ) +AnnotationAssertion( "An anion trap column is a trap column and ion-exchange column which contains cationic anion-exchange resins."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01277"^^xsd:string) -AnnotationAssertion(rdfs:label "anion trap column"@en) -AnnotationAssertion( "anion trap column"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01277"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anion trap column"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "fluorescene detector"@en) -AnnotationAssertion( "WEB:"@en) + +# Class: (fluorescene detector) + AnnotationAssertion( "fluorescene detector"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01080"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A single wavelength detector, where the excitation light wavelength is normally a mercury lamp generated high intensity UV light at 253.7 nm. Many substances that fluoresce will be excited by light of this wavelength and hence be detected."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01080"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A single wavelength detector, where the excitation light wavelength is normally a mercury lamp generated high intensity UV light at 253.7 nm. Many substances that fluoresce will be excited by light of this wavelength and hence be detected."@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorescene detector"@en) SubClassOf( ) -AnnotationAssertion( "The Eagle is a 4 mm 1H/X solid-state MAS probe with a top spinning speed of 18 kHz. Its simple design is robust, reliable and easy to spin. Configurations are available for 200 to 600 MHz wide bore magnets on Tecmag, Bruker, Chemagnetics, JEOL and Varian spectrometers."@en) + +# Class: (tecmag EAGLE probe) + +AnnotationAssertion( "tecmag EAGLE probe"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( "The Eagle is a 4 mm 1H/X solid-state MAS probe with a top spinning speed of 18 kHz. Its simple design is robust, reliable and easy to spin. Configurations are available for 200 to 600 MHz wide bore magnets on Tecmag, Bruker, Chemagnetics, JEOL and Varian spectrometers."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400248"^^xsd:string) AnnotationAssertion( "NMR probe"@en) -AnnotationAssertion( "tecmag EAGLE probe"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tecmag EAGLE probe"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400248"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01239"^^xsd:string) + +# Class: (electrical conductivity detector) + AnnotationAssertion( "electrical conductivity detector"@en) -AnnotationAssertion(rdfs:label "electrical conductivity detector"@en) -AnnotationAssertion( "The electrical conductivity detector measures the conductivity of the mobile phase. There is usually background conductivity which must be backed-off by suitable electronic adjustments. If the mobile phase contains buffers, the detector gives a base signal that completely overwhelms that from any solute usually making detection impossible. Thus, the electrical conductivity detector a bulk property detector. and senses all ions whether they are from a solute or from the mobile phase. In order to prevent polarization of the sensing electrodes, AC voltages must be used and so it is the impedance not the resistance of the electrode system that is actually measured. From a physical chemistry stand point the conductivity of a solution is more important than its resistance. However, it is the resistance (impedance) of the electrode system that determines the current across it. The resistance of any conductor varies directly as its length and inversely as its cross sectional area."@en) AnnotationAssertion( ) +AnnotationAssertion( "The electrical conductivity detector measures the conductivity of the mobile phase. There is usually background conductivity which must be backed-off by suitable electronic adjustments. If the mobile phase contains buffers, the detector gives a base signal that completely overwhelms that from any solute usually making detection impossible. Thus, the electrical conductivity detector a bulk property detector. and senses all ions whether they are from a solute or from the mobile phase. In order to prevent polarization of the sensing electrodes, AC voltages must be used and so it is the impedance not the resistance of the electrode system that is actually measured. From a physical chemistry stand point the conductivity of a solution is more important than its resistance. However, it is the resistance (impedance) of the electrode system that determines the current across it. The resistance of any conductor varies directly as its length and inversely as its cross sectional area."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01239"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electrical conductivity detector"@en) SubClassOf( ) + +# Class: (NMR instrument) + AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) AnnotationAssertion( "An Instrument which is used to carry out a NMR analysis of some sample."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "NMR instrument"@en) -AnnotationAssertion( ) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400059"^^xsd:string) AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "NMR instrument"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400059"^^xsd:string) SubClassOf( ) + +# Class: (piston-seal) + AnnotationAssertion( "piston-seal"@en) +AnnotationAssertion( ) AnnotationAssertion( "The seal made by a piston in a diaphragm pump. The unique property of the reciprocating diaphragm pump is that the actuating piston does not come into direct contact with the mobile phase and thus, the demands on the piston-cylinder seal are not so great. The diaphragm has a relatively high surface area and thus, the movement of the diaphragm is relatively small and consequently the pump can be operated at a fairly high frequency. High frequency pumping results in a very significant reduction in pulse amplitude and, in addition, high frequency pulses are more readily damped by the column system. Nevertheless, it must be emphasized that diaphragm pumps are not pulseless."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01116"^^xsd:string) -AnnotationAssertion(rdfs:label "piston-seal"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01116"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "piston-seal"@en) SubClassOf( ) + +# Class: (mass selective detector) + AnnotationAssertion( "mass selective detector"@en) -AnnotationAssertion( ) -AnnotationAssertion( "mass spectrometry detector"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) AnnotationAssertion( "A mass selective detector is a GC detector that uses mass spectrometry. It is based upon the ionization of solute molecules in the ion source and the separation of the ions generated on the basis of their mass/charge ratio by an analyzer unit. This may be a magnetic sector analyzer, a quadruple mass filter, or an ion trap. Ions are detected by a dynode electron multiplier."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "mass spectrometry detector"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01198"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mass selective detector"@en) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( ) SubClassOf( ) + +# Class: (spin column) + AnnotationAssertion( "spin column"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) AnnotationAssertion( "A spin column is a chromatography column which is suitable for putting it into a centrifuge. A spin column enforces separation through increased G-forces while spinning the column in a centrifuge. It is often used in DNA gel extraction kits."@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01232"^^xsd:string) -AnnotationAssertion(rdfs:label "spin column"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01232"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "spin column"@en) SubClassOf( ) + +# Class: (manufacturer role) + AnnotationAssertion( "manufacturer role"^^xsd:string) AnnotationAssertion( "With respect to The Accuri C6 Flow Cytometer System, the organization Accuri bears the role manufacturer role. With respect to a transformed line of tissue culture cells derived by a specific lab, the lab whose personnel isolated the cll line bears the role manufacturer role. With respect to a specific antibody produced by an individual scientist, the scientist who purifies, characterizes and distributes the anitbody bears the role manufacturer role."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "Manufacturer role is a role which inheres in a person or organization and which is realized by a manufacturing process."^^xsd:string) -AnnotationAssertion(rdfs:label "manufacturer role"^^xsd:string) AnnotationAssertion( "GROUP: Role Branch"^^xsd:string) +AnnotationAssertion( "OBI"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "OBI"^^xsd:string) +AnnotationAssertion(rdfs:label "manufacturer role"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -SubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ))) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion(rdfs:label "transfer line"@en) -AnnotationAssertion( "chromatography device"@en) -AnnotationAssertion( ) +SubClassOf( ObjectSomeValuesFrom( ObjectUnionOf( ))) + +# Class: (transfer line) + AnnotationAssertion( "transfer line"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A combination of devices that are used in connection with a sampling head for transferring components of an applied sample to the analyzing part of a chromatography system."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01235"^^xsd:string) +AnnotationAssertion( "chromatography device"@en) AnnotationAssertion( ) -AnnotationAssertion( "A combination of devices that are used in connection with a sampling head for transferring components of an applied sample to the analyzing part of a chromatography system."@en) +AnnotationAssertion(rdfs:label "transfer line"@en) SubClassOf( ) + +# Class: (gradient pump system) + +AnnotationAssertion( "gradient pump system"@en) AnnotationAssertion( ) +AnnotationAssertion( "A pump system optimized for gradient chromatography."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01050"^^xsd:string) -AnnotationAssertion( "gradient pump system"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "A pump system optimized for gradient chromatography."@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01050"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "gradient pump system"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01233"^^xsd:string) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "A high temperature column is a chromatography column which is suitable for and withstands very high temperatures in chromatography ovens."@en) + +# Class: (high temperature column) + +AnnotationAssertion( "high temperature column"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "A high temperature column is a chromatography column which is suitable for and withstands very high temperatures in chromatography ovens."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "high temperature column"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01233"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "high temperature column"@en) SubClassOf( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "A column connector that connects one column on one side with two columns at the other side, hence building a Y shaped structure."@en) + +# Class: (y-column connector) + +AnnotationAssertion( "y-column connector"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "A column connector that connects one column on one side with two columns at the other side, hence building a Y shaped structure."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "y-column connector"@en) -AnnotationAssertion( "y-column connector"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01237"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "y-column connector"@en) SubClassOf( ) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "For analyzing non-UV absorbing substances, such as carbohydrates, lipids and polymers. This is also the detector of choice for gel permeation chromatography. The refractive index detector is one of the least sensitive LC detectors. It is very sensitive to changes in ambient temperature, pressure changes, flow-rate changes and can not be used for gradient elution. Despite these many disadvantages, this detector is extremely useful for detecting those compounds that are nonionic, do not adsorb in the UV, and do not fluoresce. There are many optical systems used in refractive index detectors but one of the most common is the differential refractive index detector."@en) -AnnotationAssertion( ) + +# Class: (refractive index detector) + AnnotationAssertion( "refractive index detector"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01081"^^xsd:string) -AnnotationAssertion(rdfs:label "refractive index detector"@en) AnnotationAssertion( ) +AnnotationAssertion( "For analyzing non-UV absorbing substances, such as carbohydrates, lipids and polymers. This is also the detector of choice for gel permeation chromatography. The refractive index detector is one of the least sensitive LC detectors. It is very sensitive to changes in ambient temperature, pressure changes, flow-rate changes and can not be used for gradient elution. Despite these many disadvantages, this detector is extremely useful for detecting those compounds that are nonionic, do not adsorb in the UV, and do not fluoresce. There are many optical systems used in refractive index detectors but one of the most common is the differential refractive index detector."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01081"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "refractive index detector"@en) SubClassOf( ) + +# Class: (anion exchange column) + AnnotationAssertion( "anion exchange column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01095"^^xsd:string) -AnnotationAssertion(rdfs:label "anion exchange column"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An anion exchange column is a chromatography column that is used in anion exchange chromatography and which enables the separation of anion mixtures."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01095"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "An anion exchange column is a chromatography column that is used in anion exchange chromatography and which enables the separation of anion mixtures."@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "anion exchange column"@en) SubClassOf( ) + +# Class: (plunger column) + +AnnotationAssertion( "plunger column"@en) AnnotationAssertion( ) +AnnotationAssertion( "A plunger column is a chromatography column with adjustable heigth control. By means of an adjustable endpiece (plunger) the user can adjust the column length without disturbing the packed bed. Plunger columns can equalize volume changes and thus avoids dead volumes within the column."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01108"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "plunger column"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "A plunger column is a chromatography column with adjustable heigth control. By means of an adjustable endpiece (plunger) the user can adjust the column length without disturbing the packed bed. Plunger columns can equalize volume changes and thus avoids dead volumes within the column."@en) -AnnotationAssertion( "plunger column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01108"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "flame photometric detector"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01091"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "WEB:"@en) + +# Class: (flame photometric detector) + +AnnotationAssertion( "flame photometric detector"@en) AnnotationAssertion( ) +AnnotationAssertion( "The determination of sulfur or phosphorus containing compounds is the job of the flame photometric detector (FPD). This device uses the chemiluminescent reactions of these compounds in a hydrogen/air flame as a source of analytical information that is relatively specific for substances containing these two kinds of atoms. The emitting species for sulfur compounds is excited S2. The lambda max for emission of excited S2 is approximately 394 nm. The emitter for phosphorus compounds in the flame is excited HPO (lambda max = doublet 510-526 nm). In order to selectively detect one or the other family of compounds as it elutes from the GC column, an interference filter is used between the flame and the photomultiplier tube (PMT) to isolate the appropriate emission band. The drawback here being that the filter must be exchanged between chromatographic runs if the other family of compounds is to be detected."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "FPD"@en) -AnnotationAssertion( "flame photometric detector"@en) -AnnotationAssertion( "The determination of sulfur or phosphorus containing compounds is the job of the flame photometric detector (FPD). This device uses the chemiluminescent reactions of these compounds in a hydrogen/air flame as a source of analytical information that is relatively specific for substances containing these two kinds of atoms. The emitting species for sulfur compounds is excited S2. The lambda max for emission of excited S2 is approximately 394 nm. The emitter for phosphorus compounds in the flame is excited HPO (lambda max = doublet 510-526 nm). In order to selectively detect one or the other family of compounds as it elutes from the GC column, an interference filter is used between the flame and the photomultiplier tube (PMT) to isolate the appropriate emission band. The drawback here being that the filter must be exchanged between chromatographic runs if the other family of compounds is to be detected."@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01091"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "flame photometric detector"@en) SubClassOf( ) -AnnotationAssertion( "Better flow rates can be achieved by using a pump or by using compressed gas (e.g. air, nitrogen, or argon) to push the solvent through the column (flash column chromatography)."@en) -AnnotationAssertion( "WEB:"@en) + +# Class: (chromatography pump system) + AnnotationAssertion( "chromatography pump system"@en) AnnotationAssertion( ) +AnnotationAssertion( "Better flow rates can be achieved by using a pump or by using compressed gas (e.g. air, nitrogen, or argon) to push the solvent through the column (flash column chromatography)."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01046"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chromatography pump system"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) SubClassOf( ) -AnnotationAssertion( "An optical filter that is used to obtain monochromatic light of a defined wavelength from detector lamps."@en) + +# Class: (chromatography detector filter) + AnnotationAssertion( "chromatography detector filter"@en) -AnnotationAssertion(rdfs:label "chromatography detector filter"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01121"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "An optical filter that is used to obtain monochromatic light of a defined wavelength from detector lamps."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01121"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chromatography detector filter"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "cation trap column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01278"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) + +# Class: (cation trap column) + AnnotationAssertion( "cation trap column"@en) +AnnotationAssertion( ) AnnotationAssertion( "A cation trap column is a trap column and ion-exchange column which contains anionic cation-exchange resins."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01278"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cation trap column"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (column adapter) + AnnotationAssertion( "column adapter"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) AnnotationAssertion( "An Adapter that enabled the connection of a column to additional devices."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01113"^^xsd:string) +AnnotationAssertion( "chromatography device"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) AnnotationAssertion(rdfs:label "column adapter"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (pulsed amperometric detector) + +AnnotationAssertion( "pulsed amperometric detector"@en) +AnnotationAssertion( ) AnnotationAssertion( "A chromatography detector as used by high-performance anion exchange chromatography that provides sensitive and specific detection of carbohydrates. Pulsed Electrochemical Detection (PED) allows simple, sensitive, and direct detection of numerous polar aliphatic compounds, especially carbohydrates. This technique exploits the electrocatalytic activity of noble metal electrode surfaces to oxidize various polar functional groups. In PED, multi-step potential-time waveforms at Au and Pt electrodes realize amperometric/coulometric detection while maintaining uniform and reproducible electrode activity. The response mechanisms in PED are dominated by the surface properties of the electrode, and, as a consequence, members of each chemical class of compounds produce virtually identical voltammetric responses. Thus, the full potential is realized when combined with high performance liquid chromatography (HPLC)."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "PAD"@en) AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01240"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pulsed amperometric detector"@en) -AnnotationAssertion( "pulsed amperometric detector"@en) -AnnotationAssertion( "PAD"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "ozone-induced chemiluminescence detector"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01088"^^xsd:string) -AnnotationAssertion( "Although there are many direct ozone chemiluminescent reactions with various gaseous molecules, the incorporation of a conversion step to convert various non-chemiluminescent analytes to a species capable of reacting with ozone to produce chemiluminescence broadens the horizon of this technique tremendously. The conversion of nearly all nitrogen- and sulfur-containing compounds to their respective chemiluminescent species for universal nitrogen and sulfur detection has made nitrogen/sulfur chemiluminescence detection the most widely used analytical methods based upon ozone-induced chemiluminescence. In addition to non-chromatographic applications, nitrogen/sulfur chemiluminescence detection has been adapted to various chromatographic techniques from gas chromatography to liquid and supercritical fluid chromatography as specialized element-specific detectors. The characteristics of these detectors are evaluated and compared to other element-selective detection techniques. The unique features of the chemiluminescence detectors have made them powerful tools in many diverse fields of analytical chemistry."@en) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (ozone-induced chemiluminescence detector) + AnnotationAssertion( "ozone-induced chemiluminescence detector"@en) +AnnotationAssertion( ) +AnnotationAssertion( "Although there are many direct ozone chemiluminescent reactions with various gaseous molecules, the incorporation of a conversion step to convert various non-chemiluminescent analytes to a species capable of reacting with ozone to produce chemiluminescence broadens the horizon of this technique tremendously. The conversion of nearly all nitrogen- and sulfur-containing compounds to their respective chemiluminescent species for universal nitrogen and sulfur detection has made nitrogen/sulfur chemiluminescence detection the most widely used analytical methods based upon ozone-induced chemiluminescence. In addition to non-chromatographic applications, nitrogen/sulfur chemiluminescence detection has been adapted to various chromatographic techniques from gas chromatography to liquid and supercritical fluid chromatography as specialized element-specific detectors. The characteristics of these detectors are evaluated and compared to other element-selective detection techniques. The unique features of the chemiluminescence detectors have made them powerful tools in many diverse fields of analytical chemistry."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01088"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ozone-induced chemiluminescence detector"@en) SubClassOf( ) + +# Class: (chromatography consumable) + +AnnotationAssertion( "chromatography consumable"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "chromatography consumable"@en) -AnnotationAssertion( ) AnnotationAssertion( "A chromatography consumable is a consumable that is used in a chromatography experiment."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01115"^^xsd:string) AnnotationAssertion( "chromatography device"@en) -AnnotationAssertion( "chromatography consumable"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chromatography consumable"@en) SubClassOf( ) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) + +# Class: (column frit) + +AnnotationAssertion( "column frit"@en) +AnnotationAssertion( ) AnnotationAssertion( "A part of the column content that separates column packing compartments. In radial columns the packing is supported between two cylindrical frits and the gap between represents the bed height or column length. The outer frit is the column inlet and consequently the sample initially has a large area of stationary phase with which to interact. Frits are porous metal products to prevent unwanted particles from entering the chromatography system. These particles may come from the sample, the solvent or debris generated by the chromatography system itself. Such particles entering the system may lead to clogging of capillaries, interference with the chromatography by changing chromatographic parameters or disturbance of the detector function. Characteristics of a frit, besides the diameter and the thickness, is the porosity (pore distribution, density)."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01070"^^xsd:string) -AnnotationAssertion( "column frit"@en) AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "column frit"@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "A liquid chromatography column is a chromatography column that is used in liquid chromatography, i.e. a column that is provided with a liquid sample mix."@en) + +# Class: (liquid chromatography column) + +AnnotationAssertion( "liquid chromatography column"@en) AnnotationAssertion( ) +AnnotationAssertion( "A liquid chromatography column is a chromatography column that is used in liquid chromatography, i.e. a column that is provided with a liquid sample mix."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01227"^^xsd:string) -AnnotationAssertion(rdfs:label "liquid chromatography column"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01227"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "liquid chromatography column"@en) +AnnotationAssertion(rdfs:label "liquid chromatography column"@en) SubClassOf( ) + +# Class: (detector lamp) + AnnotationAssertion( "detector lamp"@en) -AnnotationAssertion(rdfs:label "detector lamp"@en) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( ) AnnotationAssertion( "A lamp used in a chromatography detector that excites sample molecules at certain frequencies / emission wavelengths, e.g. Mercury Vapor Lamp (253.7 nm), Zinc Vapor Lamp (2123.9 nm and 307.6 nm), Cadmium Vapor Lamp (228.8, 326.1,340.3, and 346.6 nm). To obtain monochromatic light an appropriate light filter would be needed."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01119"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "detector lamp"@en) SubClassOf( ) + +# Class: (chart recorder) + +AnnotationAssertion( "chart recorder"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "chart recorder"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "The chart recorder is a device that transduces signal-intensities into a graphical peak output: As the separated components of the gas sample emerge into the detector, the change in voltage in the detecting bridge circuit causes a representative peak to be drawn on a chart recorder. The position of the peak along the time axis of the chart measures the component's retention time, which identifies the component. This is directly related to carrier gas flow rate, temperature and column packing and dimensions. The area under each peak is proportional to the concentration of the component of the sample. The area of the peaks inscribed on the chart recorder can be determined by multiplying the height of the peak in mm, by the width of the peak in mm at 1/2 the peak height. The calibration curves for use with the chart recorder are therefore peak area plotted against concentration."@en) -AnnotationAssertion( "chromatography device"@en) -AnnotationAssertion( "chart recorder"@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01069"^^xsd:string) +AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chart recorder"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (open tubular column) + +AnnotationAssertion( "open tubular column"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An open tubular column is a chromatography column in which the particles of the solid stationary phase or the support coated with a liquid stationary phase are concentrated on or along the inside tube wall leaving an open, unrestricted path for the mobile phase in the middle part of the tube."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion(rdfs:label "open tubular column"@en) -AnnotationAssertion( "An open tubular column is a chromatography column in which the particles of the solid stationary phase or the support coated with a liquid stationary phase are concentrated on or along the inside tube wall leaving an open, unrestricted path for the mobile phase in the middle part of the tube."@en) -AnnotationAssertion( ) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01219"^^xsd:string) -AnnotationAssertion( "open tubular column"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "open tubular column"@en) SubClassOf( ) -AnnotationAssertion( "high resolution MAS, hr-MAS"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Samples that are neither solid nor liquid, being of biological, chemical, or pharmaceutical interest, reveal highly resolved spectra when magic angle spinning is applied. The correct solution is a gradient, such that the field varies along the spinner axis. This so-called Magic Angle Gradient is employed in Brukers high resolution Magic Angle Spinning (hr-MAS) probes, and is implemented in such a way that it is compatible with the stator and does not interfere with the sample eject or insert. Bruker BioSpin has developed a series of dedicated probes for standard bore magnets to accommodate the rapidly expanding field of hr-MAS. These probes are available in double (e.g. 1H and 13C) and triple resonance (e.g. 1H, 13C, 15N) modes and come equipped with a deuterium lock channel. The probes have automatic sample ejection and insertion capability, with the availability of an optional sample changer, enabling fully automated sample runs. Probes can be equipped with an optional B0 gradient, directed along the magic angle, so that gradient spectroscopy can be done used."@en) -AnnotationAssertion(rdfs:label "high resolution magic angle spin probe"@en) + +# Class: (high resolution magic angle spin probe) + AnnotationAssertion( "high resolution magic angle spin probe"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400192"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "Samples that are neither solid nor liquid, being of biological, chemical, or pharmaceutical interest, reveal highly resolved spectra when magic angle spinning is applied. The correct solution is a gradient, such that the field varies along the spinner axis. This so-called Magic Angle Gradient is employed in Brukers high resolution Magic Angle Spinning (hr-MAS) probes, and is implemented in such a way that it is compatible with the stator and does not interfere with the sample eject or insert. Bruker BioSpin has developed a series of dedicated probes for standard bore magnets to accommodate the rapidly expanding field of hr-MAS. These probes are available in double (e.g. 1H and 13C) and triple resonance (e.g. 1H, 13C, 15N) modes and come equipped with a deuterium lock channel. The probes have automatic sample ejection and insertion capability, with the availability of an optional sample changer, enabling fully automated sample runs. Probes can be equipped with an optional B0 gradient, directed along the magic angle, so that gradient spectroscopy can be done used."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "high resolution MAS, hr-MAS"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400192"^^xsd:string) AnnotationAssertion( "NMR probe"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "high resolution magic angle spin probe"@en) SubClassOf( ) + +# Class: (hydrogen generator) + AnnotationAssertion( "hydrogen generator"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01035"^^xsd:string) -AnnotationAssertion(rdfs:label "hydrogen generator"@en) +AnnotationAssertion( ) AnnotationAssertion( "A gas generator that generates hydrogen gas."@en) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) -SubClassOf( ) -AnnotationAssertion( "glass column"@en) -AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01035"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hydrogen generator"@en) +SubClassOf( ) + +# Class: (glass column) + +AnnotationAssertion( "glass column"@en) +AnnotationAssertion( ) AnnotationAssertion( "A glass column is a chromatography column made out of glass that is usually used for larger scale and preparative liquid chromatography separations."@en) -AnnotationAssertion(rdfs:label "glass column"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01101"^^xsd:string) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01101"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "glass column"@en) SubClassOf( ) -AnnotationAssertion( "GROUP:"@en) + +# Class: (auto injector) + +AnnotationAssertion( "auto injector"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A gas chromatography device that can auto-inject a small number of samples an inlet."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01058"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A gas chromatography device that can auto-inject a small number of samples an inlet."@en) -AnnotationAssertion( "auto injector"@en) AnnotationAssertion(rdfs:label "auto injector"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01058"^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) + +# Class: (guard column) + +AnnotationAssertion( "guard column"@en) AnnotationAssertion( ) +AnnotationAssertion( "Guard columns are installed between the injection valve and the analytical or preparative column and here will remove contaminants and prolong the lifetime of the columns."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01111"^^xsd:string) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "guard column"@en) -AnnotationAssertion( ) AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "guard column"@en) -AnnotationAssertion( "Guard columns are installed between the injection valve and the analytical or preparative column and here will remove contaminants and prolong the lifetime of the columns."@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "protein expression profiling"^^xsd:string) + +# Class: (protein expression profiling) + +AnnotationAssertion( "protein expression profiling"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "a planned process which aims to provide information about protein expression and translation activity using protein extracts collected from a material entity using a range of techniques and instrument such as Mass spectrometers, Gel electrophoresis, Western Blots, Protein microarrays"^^xsd:string) -AnnotationAssertion( "OBI branch derived"^^xsd:string) AnnotationAssertion( "Phlippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "protein expression profiling"^^xsd:string) AnnotationAssertion( "proteomic analysis"^^xsd:string) +AnnotationAssertion( "OBI branch derived"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protein expression profiling"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "NMR probe"@en) -AnnotationAssertion(rdfs:label "high resolution probe with automatic tuning and matching"@en) -AnnotationAssertion( "High Resolution Probes with Automatic Tuning and Matching, HR_probe_with_ATM"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400224"^^xsd:string) -AnnotationAssertion( ) + +# Class: (high resolution probe with automatic tuning and matching) + AnnotationAssertion( "high resolution probe with automatic tuning and matching"@en) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "The Automatic Tuning and Matching (ATM) option for AVANCE spectrometers is available for double resonance probes in fixed-frequency and broadband tunable configurations with either direct or indirect detection. Thus, for multinuclear operation, as often required for applications in inorganic chemistry, ATM facilitates the accurate setting of 90 degree pulse widths on both observe and decoupling channels for each chosen nucleus and each individual sample - even with full automation. Triple resonance probes in fixed-frequency configurations, as typically used for inverse detection with high-field systems."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "High Resolution Probes with Automatic Tuning and Matching, HR_probe_with_ATM"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400224"^^xsd:string) +AnnotationAssertion( "NMR probe"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "high resolution probe with automatic tuning and matching"@en) SubClassOf( ) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "A gas chromatographic detection system based on the low pressure, gas phase chemiluminescence of the reaction mixture of molecular fluorine with organo-sulfur, -selenium, and -tellurium compounds separated from (gas phase) headspace samples. This detector was originally developed in the research group of John Birks at the University of Colorado, USA and was manufactured and sold by Sievers Instruments (Boulder Colorado, USA). This system can be divided up into three parts: the chromatograph, transfer line, and reaction cell; PMT and photon counting electronics; and the molecular fluorine generator."@en) -AnnotationAssertion( ) + +# Class: (fluorine-induced chemiluminescence detector) + AnnotationAssertion( "fluorine-induced chemiluminescence detector"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A gas chromatographic detection system based on the low pressure, gas phase chemiluminescence of the reaction mixture of molecular fluorine with organo-sulfur, -selenium, and -tellurium compounds separated from (gas phase) headspace samples. This detector was originally developed in the research group of John Birks at the University of Colorado, USA and was manufactured and sold by Sievers Instruments (Boulder Colorado, USA). This system can be divided up into three parts: the chromatograph, transfer line, and reaction cell; PMT and photon counting electronics; and the molecular fluorine generator."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01087"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fluorine-induced chemiluminescence detector"@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01100"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion(rdfs:label "size exclusion column"@en) + +# Class: (size exclusion column) + AnnotationAssertion( "size exclusion column"@en) +AnnotationAssertion( ) AnnotationAssertion( "A size exclusion column is a chromatography column as used in size exclusion chromatography and which enables the separation of mixtures according to differrences in molecular size."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01100"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "size exclusion column"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) + +# Class: (chromatography splitter) + +AnnotationAssertion( "chromatography splitter"@en) +AnnotationAssertion( ) AnnotationAssertion( "An adjustable restriction that is placed in the waste outlet to allow the necessary pressure to develop at the column inlet to force a flow (q ml/min) through the column. If the flow of mobile phase is Q ml/min then the waste flow will be (Q-q) ml/min. by adjusting the waste flow, the proportion of the sample entering the capillary column can be varied over a wide range of values and the necessary minimum permissible volume for the particular column in use can be selected for analysis. Unfortunately, the fraction taken in this way may not be representative of the original sample. This is due to the individual solutes in the mixture having different diffusivities and, thus, they distribute themselves across the sampling tube in an irregular manner. In general, the components with higher diffusivities (e.g., those solutes of lower molecular weight) will diffuse away from the bulk sample more quickly than those having lower diffusivities."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( ) -AnnotationAssertion( "chromatography splitter"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01041"^^xsd:string) AnnotationAssertion( "chromatography device"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "chromatography splitter"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01041"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01234"^^xsd:string) -AnnotationAssertion( "A custom made column ia a chromatography column which is specifically tailored according to the needs of the separation as requested by a scientist or working group."@en) + +# Class: (custom made column) + AnnotationAssertion( "custom made column"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "A custom made column ia a chromatography column which is specifically tailored according to the needs of the separation as requested by a scientist or working group."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01234"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "custom made column"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01103"^^xsd:string) -AnnotationAssertion(rdfs:label "gel permeation column"@en) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "WEB:"@en) + +# Class: (gel permeation column) + AnnotationAssertion( "gel permeation column"@en) +AnnotationAssertion( ) AnnotationAssertion( "A gel permeation column is a chromatography column which is used in gel permeation chromatography and which employs as the stationary phase a swollen gel made by polymerizing and cross-linking styrene in the presence of a diluent which is a nonsolvent for the styrene polymer. The polymer to be analyzed is introduced at the top of the column and then is elutriated with a solvent. The polymer molecules diffuse through the gel at rates depending on their molecular size."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01103"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gel permeation column"@en) SubClassOf( ) -AnnotationAssertion( "DNA sequencing is a sequencing process which uses deoxyribonucleic acid as input and results in a the creation of DNA sequence information artifact using a DNA sequencer instrument."^^xsd:string) + +# Class: (DNA sequencing) + +AnnotationAssertion( "DNA sequencing"^^xsd:string) +AnnotationAssertion( "Genomic deletions of OFD1 account for 23% of oral-facial-digital type 1 syndrome after negative DNA sequencing. Thauvin-Robinet C, Franco B, Saugier-Veber P, Aral B, Gigot N, Donzel A, Van Maldergem L, Bieth E, Layet V, Mathieu M, Teebi A, Lespinasse J, Callier P, Mugneret F, Masurel-Paulet A, Gautier E, Huet F, Teyssier JR, Tosi M, Frébourg T, Faivre L. Hum Mutat. 2008 Nov 19. PMID: 19023858"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "OBI Branch derived"^^xsd:string) +AnnotationAssertion( "DNA sequencing is a sequencing process which uses deoxyribonucleic acid as input and results in a the creation of DNA sequence information artifact using a DNA sequencer instrument."^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "DNA sequencing"^^xsd:string) -AnnotationAssertion( "Genomic deletions of OFD1 account for 23% of oral-facial-digital type 1 syndrome after negative DNA sequencing. Thauvin-Robinet C, Franco B, Saugier-Veber P, Aral B, Gigot N, Donzel A, Van Maldergem L, Bieth E, Layet V, Mathieu M, Teebi A, Lespinasse J, Callier P, Mugneret F, Masurel-Paulet A, Gautier E, Huet F, Teyssier JR, Tosi M, Frébourg T, Faivre L. Hum Mutat. 2008 Nov 19. PMID: 19023858"^^xsd:string) -AnnotationAssertion( "DNA sequencing"^^xsd:string) +AnnotationAssertion( "OBI Branch derived"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA sequencing"^^xsd:string) SubClassOf( ) + +# Class: (quaternary pump system) + +AnnotationAssertion( "quaternary pump system"@en) AnnotationAssertion( ) -AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion( ) AnnotationAssertion( "A pump system that pump and mix up to four different solvents in parallel."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01047"^^xsd:string) -AnnotationAssertion( "quaternary pump system"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "quaternary pump system"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01107"^^xsd:string) -AnnotationAssertion( ) + +# Class: (carbon nanotube column) + +AnnotationAssertion( "carbon nanotube column"@en) AnnotationAssertion( ) +AnnotationAssertion( "Carbon nanotubes (CNTs) are known to have high thermal and mechanical stability and have the potential to be high-performance separation media that utilize the nanoscale interactions. CNT can be applied in long capillary tubes for the development of gas chromatography columns. A film of CNTs can be deposited by chemical vapor deposition (CVD) to form the stationary phase in the open tubular format. Altering the CVD conditions can vary the thickness and the morphology of the CNT film, which opens the possibility of selectivity tuning. The ability to fabricate long tubes coated with CNTs can be readily employed in other gas- and liquid-phase separations as well."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "carbon nanotube column"@en) -AnnotationAssertion(rdfs:label "carbon nanotube column"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "Carbon nanotubes (CNTs) are known to have high thermal and mechanical stability and have the potential to be high-performance separation media that utilize the nanoscale interactions. CNT can be applied in long capillary tubes for the development of gas chromatography columns. A film of CNTs can be deposited by chemical vapor deposition (CVD) to form the stationary phase in the open tubular format. Altering the CVD conditions can vary the thickness and the morphology of the CNT film, which opens the possibility of selectivity tuning. The ability to fabricate long tubes coated with CNTs can be readily employed in other gas- and liquid-phase separations as well."@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01107"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "carbon nanotube column"@en) SubClassOf( ) -AnnotationAssertion( "blood analysis, haematology"^^xsd:string) -AnnotationAssertion( "hematology is a process studying blood and blood producing organs relying on a variety of techniques and instruments"^^xsd:string) + +# Class: (hematology) + AnnotationAssertion( "hematology"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "hematology"^^xsd:string) +AnnotationAssertion( "hematology is a process studying blood and blood producing organs relying on a variety of techniques and instruments"^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "blood analysis, haematology"^^xsd:string) AnnotationAssertion( "OBI branch derived"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion(rdfs:label "hematology"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01040"^^xsd:string) + +# Class: (column heater) + AnnotationAssertion( "column heater"@en) -AnnotationAssertion( "WEB:"@en) -AnnotationAssertion(rdfs:label "column heater"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "The glass liner can be fitted with a separate heater and the volatilization temperature can, thus, be controlled. This flash heater system is available in most chromatographs. By using a syringe with a long needle, the tip can be made to penetrate past the liner and discharge its contents directly into the column packing. This procedure is called 'on-column injection' and, as it reduces peak dispersion on injection and thus, provides higher column efficiencies, is often the preferred procedure."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "WEB:"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01040"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "column heater"@en) SubClassOf( ) + +# Class: (DNA methylation profiling assay) + +AnnotationAssertion( "DNA methylation profiling assay"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "an assay which aims to provide information about state of methylation of DNA molecules using genomic DNA collected from a material entity using a range of techniques and instrument such as DNA sequencers and often relying on treatment with bisulfites to ensure cytosine conversion."^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI branch derived"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "DNA methylation profiling assay"^^xsd:string) AnnotationAssertion(rdfs:label "DNA methylation profiling assay"^^xsd:string) -AnnotationAssertion( "an assay which aims to provide information about state of methylation of DNA molecules using genomic DNA collected from a material entity using a range of techniques and instrument such as DNA sequencers and often relying on treatment with bisulfites to ensure cytosine conversion."^^xsd:string) -AnnotationAssertion( "OBI branch derived"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "GROUP:"@en) + +# Class: (acquisition computer) + +AnnotationAssertion( "acquisition computer"@en) +AnnotationAssertion( ) AnnotationAssertion( "A Computer used for NMR, can be divided into central processing unit (CPU), consisting of instruction, interpretation and arithmetic unit plus fast access memory, and peripheral devices such as bulk data storage and input and output devices (including, via the interface, the spectrometer). Under software control, the computer controls the RF pulses and gradients necessary to acquire data, and process the data to produce spectra or images. Note that devices such as the spectrometer may themselves incorporate small computers."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) -AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( "GROUP:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400013"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "acquisition computer"@en) +AnnotationAssertion( "NMR instrument"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "acquisition computer"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "gas chromatography detector"@en) + +# Class: (gas chromatography detector) + +AnnotationAssertion( "gas chromatography detector"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A gas chromatography detector is a chromatography detector that locates in the dimensions of space and time, the positions of the components of a mixture that has been subjected to a gas chromatographic process and thus permits the senses to appreciate the nature of the separation. There is no LC detector that has an equivalent performance to the flame ionization detector (FID) used in GC. In general, LC detectors have sensitivities of two to three orders of magnitude less than their GC counterparts and linear dynamic ranges one to two orders of magnitude lower. Only highly specific LC detectors have sensitivities that can approach those of GC detectors."@en) AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "FID"@en) AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01083"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "gas chromatography detector"@en) AnnotationAssertion( "chromatography detector, defined class/xps"@en) -AnnotationAssertion( "FID"@en) -AnnotationAssertion( "A gas chromatography detector is a chromatography detector that locates in the dimensions of space and time, the positions of the components of a mixture that has been subjected to a gas chromatographic process and thus permits the senses to appreciate the nature of the separation. There is no LC detector that has an equivalent performance to the flame ionization detector (FID) used in GC. In general, LC detectors have sensitivities of two to three orders of magnitude less than their GC counterparts and linear dynamic ranges one to two orders of magnitude lower. Only highly specific LC detectors have sensitivities that can approach those of GC detectors."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gas chromatography detector"@en) SubClassOf( ) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01036"^^xsd:string) -AnnotationAssertion( "gas chromatography equipment"@en) + +# Class: (gas purifier) + +AnnotationAssertion( "gas purifier"@en) +AnnotationAssertion( ) AnnotationAssertion( "Gas purifiers are instruments used for the removal of gas impurities like hydrocarbons, oxygen, and moisture from carrier gas and fuel gases for GC or GC-MS systems."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "WEB:"@en) -AnnotationAssertion( "gas purifier"@en) -AnnotationAssertion(rdfs:label "gas purifier"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01036"^^xsd:string) +AnnotationAssertion( "gas chromatography equipment"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gas purifier"@en) SubClassOf( ) + +# Class: (indirect detection probe) + +AnnotationAssertion( "indirect detection probe"@en) AnnotationAssertion( ) AnnotationAssertion( "An NMR probe designed to allow the indirect detection of acquisition nuclei."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) AnnotationAssertion( "GROUP:"@en) -AnnotationAssertion(rdfs:label "indirect detection probe"@en) -AnnotationAssertion( "indirect detection probe"@en) +AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400281"^^xsd:string) AnnotationAssertion( "NMR device"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/NMR.owl#msi_400281"^^xsd:string) +AnnotationAssertion(rdfs:label "indirect detection probe"@en) SubClassOf( ) -AnnotationAssertion( "AED"@en) -AnnotationAssertion( "PERSON:Daniel Schober"@en) -AnnotationAssertion( "WEB:"@en) + +# Class: (atomic emission detector) + AnnotationAssertion( "atomic emission detector"@en) -AnnotationAssertion( "Instead of measuring simple gas phase (carbon containing) ions created in a flame as with the flame ionization detector, or the change in background current because of electronegative element capture of thermal electrons as with the electron capture detector, the AED has a much wider applicability because it is based on the detection of atomic emissions. The strength of the AED lies in the detector's ability to simultaneously determine the atomic emissions of many of the elements in analytes that elute from a GC capillary column (called eluants or solutes in some books). As eluants come off the capillary column they are fed into a microwave powered plasma (or discharge) cavity where the compounds are destroyed and their atoms are excited by the energy of the plasma. The light that is emitted by the excited particles is separated into individual lines via a photodiode array. The associated computer then sorts out the individual emission lines and can produce chromatograms made up of peaks from eluants that contain only a specific element."@en) AnnotationAssertion( ) +AnnotationAssertion( "Instead of measuring simple gas phase (carbon containing) ions created in a flame as with the flame ionization detector, or the change in background current because of electronegative element capture of thermal electrons as with the electron capture detector, the AED has a much wider applicability because it is based on the detection of atomic emissions. The strength of the AED lies in the detector's ability to simultaneously determine the atomic emissions of many of the elements in analytes that elute from a GC capillary column (called eluants or solutes in some books). As eluants come off the capillary column they are fed into a microwave powered plasma (or discharge) cavity where the compounds are destroyed and their atoms are excited by the energy of the plasma. The light that is emitted by the excited particles is separated into individual lines via a photodiode array. The associated computer then sorts out the individual emission lines and can produce chromatograms made up of peaks from eluants that contain only a specific element."@en) +AnnotationAssertion( "PERSON:Daniel Schober"@en) +AnnotationAssertion( "AED"@en) +AnnotationAssertion( "WEB:"@en) AnnotationAssertion( "http://msi-ontology.sourceforge.net/ontology/CHROM.owl#msi_01086"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "atomic emission detector"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "specimen collection"^^xsd:string) -AnnotationAssertion( ) + +# Class: (specimen collection) + +AnnotationAssertion( "specimen creation"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "a planned process with the objective of obtaining specimen."^^xsd:string) AnnotationAssertion( "Note: definition is in specimen creation objective which is defined as an objective to obtain and store a material entity for potential use as an input during an investigation."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "6/9/09: used at workshop"^^xsd:string) AnnotationAssertion( "Bjoern Peters"^^xsd:string) -AnnotationAssertion( "specimen creation"^^xsd:string) AnnotationAssertion( "5/31/2012: This process is not necessarily an acquisition, as specimens may be collected from materials already in posession"^^xsd:string) +AnnotationAssertion( "6/9/09: used at workshop"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "specimen collection"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "It is possible to add further restrictions, such as utilizing a plate as part of the assay."^^xsd:string) + +# Class: (ELISA) + AnnotationAssertion( "ELISA"^^xsd:string) -AnnotationAssertion(rdfs:label "ELISA"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "ELISA is an assay where an enzyme linked antibody is used to detect a plate bound material in a liquid (the evaluant) utilizing a chemiluminescent reaction. The detected signal is proxy for the concentration of an analyte in the evaluant."^^xsd:string) -AnnotationAssertion( "Enzyme-Linked ImmunoSorbent Assay"^^xsd:string) AnnotationAssertion( "1) Detection of IL-2 (analyte) in a cell supernatant (evaluant), using plate bound anti IL-2 antibodies, and a reporter enzyme linked reporter antibody. 2) Measurement of IgG antibody (analyte) titer in a serum sample (evaluant) using plate bound antigen and a reporter anti-IgG antibody."^^xsd:string) -AnnotationAssertion( "IEDB"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "ELISA is an assay where an enzyme linked antibody is used to detect a plate bound material in a liquid (the evaluant) utilizing a chemiluminescent reaction. The detected signal is proxy for the concentration of an analyte in the evaluant."^^xsd:string) +AnnotationAssertion( "It is possible to add further restrictions, such as utilizing a plate as part of the assay."^^xsd:string) AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( "Enzyme-Linked ImmunoSorbent Assay"^^xsd:string) +AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ELISA"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "IEDB"^^xsd:string) -AnnotationAssertion(rdfs:label "BrdU incorporation assay"^^xsd:string) + +# Class: (BrdU incorporation assay) + AnnotationAssertion( "BrdU incorporation assay"^^xsd:string) +AnnotationAssertion( "The measurement of T cell proliferation as a response to a viral peptide by culturing T cells stimulated with APCs and peptide in the presence of BrdU."^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A BrdU incorporation assay is an assay to detect actively replicating cells. BrdU is incorporated into the newly synthesized DNA of replicating cells (during the S phase of the cell cycle), substituting for thymidine during DNA replication. Antibodies specific for BrdU can then be used to detect the incorporated chemical, thus indicating cells that were actively replicating their DNA."^^xsd:string) +AnnotationAssertion( "IEDB"^^xsd:string) AnnotationAssertion( "wiki http://en.wikipedia.org/wiki/BrdU"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "The measurement of T cell proliferation as a response to a viral peptide by culturing T cells stimulated with APCs and peptide in the presence of BrdU."^^xsd:string) +AnnotationAssertion(rdfs:label "BrdU incorporation assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "The measurement of cytokines within the cytoplasm of a cell by permeabilizing the cell membrane to allow entry of specific antibodies, and counting the stained cells using a flow cytometer."^^xsd:string) -AnnotationAssertion( "IEDB"^^xsd:string) -AnnotationAssertion( ) + +# Class: (intracellular cytokine staining assay) + +AnnotationAssertion( "intracellular cytokine staining assay"^^xsd:string) AnnotationAssertion( "Permeabilizing T cells and staining them with fluorescent labeled anti-IFN-gamma antibodies"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "The measurement of cytokines within the cytoplasm of a cell by permeabilizing the cell membrane to allow entry of specific antibodies, and counting the stained cells using a flow cytometer."^^xsd:string) AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( "ICCS"^^xsd:string) AnnotationAssertion( "ICS"^^xsd:string) +AnnotationAssertion( "IEDB"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "intracellular cytokine staining assay"^^xsd:string) -AnnotationAssertion( "intracellular cytokine staining assay"^^xsd:string) -AnnotationAssertion( "ICCS"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "IEDB"^^xsd:string) + +# Class: (MHC multimer staining assay) + +AnnotationAssertion( "MHC multimer staining assay"^^xsd:string) +AnnotationAssertion( "Measuring T cells that are specific for the SYFPEITHI peptide when presented by the murine MHC molecule H-2 Kd by staining them with a tetramer of peptide loaded MHC complexes."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "An MHC multimer assay is an assay that detects T cells capable of binding the MHC:ligand complexes present in the multimer. The multimer is fluorescently labelled. The T cells bound to multimers are counted in a flow cytometer"^^xsd:string) +AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( "MHC tetramer assay"^^xsd:string) AnnotationAssertion( "IEDB"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "MHC multimer staining assay"^^xsd:string) AnnotationAssertion( "2/26/09 RESOLVE: Need to add a restriction for the 'MHC multimer' as a reagent used"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "MHC multimer staining assay"^^xsd:string) -AnnotationAssertion( "An MHC multimer assay is an assay that detects T cells capable of binding the MHC:ligand complexes present in the multimer. The multimer is fluorescently labelled. The T cells bound to multimers are counted in a flow cytometer"^^xsd:string) -AnnotationAssertion( "Measuring T cells that are specific for the SYFPEITHI peptide when presented by the murine MHC molecule H-2 Kd by staining them with a tetramer of peptide loaded MHC complexes."^^xsd:string) -AnnotationAssertion( "MHC tetramer assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "2/26/09: RESOLVE: need to replace 'molecular entities' in the logical definition with 'tritiated thymidine'"^^xsd:string) + +# Class: (tritiated thymidine incorporation assay) + AnnotationAssertion( "tritiated thymidine incorporation assay"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "tritiated thymidine incorporation assay"^^xsd:string) AnnotationAssertion( "The measurement of T cell proliferation as a response to a viral peptide by culturing T cells stimulated with APCs and peptide in the presence of tritiated thymidine, and using a scintillation counter to detect the radioactivity."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A tritiated thymidine incorporation assay is an assay to detect actively replicating cells. Tritiated thymidine is incorporated into the newly synthesized DNA of replicating cells (during the S phase of the cell cycle). The radioactivity of tritiated thymidine can then be detected thus indicating cells that were actively replicating their DNA."^^xsd:string) +AnnotationAssertion( "2/26/09: RESOLVE: need to replace 'molecular entities' in the logical definition with 'tritiated thymidine'"^^xsd:string) AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( "IEDB"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tritiated thymidine incorporation assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Helen Parkinson"^^xsd:string) + +# Class: (nucleotide overhang cloning) + +AnnotationAssertion( "nucleotide overhang cloning"^^xsd:string) AnnotationAssertion( "Cloning vectors are commercially available and supplied in linearized form with 3' dT overhangs"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "Nucleotide overhang cloning is the process of inserting nucleic acid into a vector using nucleotide overhangs used to prevent self ligation"^^xsd:string) -AnnotationAssertion(rdfs:label "nucleotide overhang cloning"^^xsd:string) +AnnotationAssertion( "Helen Parkinson"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "nucleotide overhang cloning"^^xsd:string) +AnnotationAssertion(rdfs:label "nucleotide overhang cloning"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) + +# Class: (immunoprecipitation) + +AnnotationAssertion( "immunoprecipitation"^^xsd:string) +AnnotationAssertion( "PMID: 19419533. Arabidopsis RNA immunoprecipitation. Terzi LC, Simpson GG. Plant J. 2009 Jul;59(1):163-8."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "is a process which realizes a material separation objective by relying on antibodies to specifically binding to material entity"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "OBI plan and planned process branch"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "PMID: 19419533. Arabidopsis RNA immunoprecipitation. Terzi LC, Simpson GG. Plant J. 2009 Jul;59(1):163-8."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "immunoprecipitation"^^xsd:string) -AnnotationAssertion( "immunoprecipitation"^^xsd:string) SubClassOf( ) + +# Class: (recombination enzyme based cloning) + +AnnotationAssertion( "recombination enzyme based cloning"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "a recombination enzyme based cloning is a recombinant vector cloning process that uses complementary nucleotide sequences in both the insert genetic material and the cloning vector with a recombination enzyme to directly create a recombinant vector"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "recombination enzyme based cloning"^^xsd:string) -AnnotationAssertion( "recombination enzyme based cloning"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "Methylated DNA immunoprecipitation sequencing assay"^^xsd:string) -AnnotationAssertion( "adapted from wikipedia"^^xsd:string) + +# Class: (MeDIP-SEQ assay) + +AnnotationAssertion( "MeDIP-SEQ assay"^^xsd:string) AnnotationAssertion( "PMID: 18612301. A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Down TA, Rakyan VK, Turner DJ, Flicek P, Li H, Kulesha E, Gräf S, Johnson N, Herrero J, Tomazou EM, Thorne NP, Bäckdahl L, Herberth M, Howe KL, Jackson DK, Miretti MM, Marioni JC, Birney E, Hubbard TJ, Durbin R, Tavaré S, Beck S. Nat Biotechnol. 2008 Jul;26(7):779-85."^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "is an assay which aims at identifying methylated sites in genomic DNA and determining methylation pattern that affect gene transcription by relying on immunoprecipitation of methylated genomic DNA, creation of a library of corresponding DNA fragments (either single or paired-end fragments) and subsequent sequencing using parallelized sequencing methods."^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "Methylated DNA immunoprecipitation sequencing assay"^^xsd:string) +AnnotationAssertion( "adapted from wikipedia"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "MeDIP-SEQ assay"^^xsd:string) -AnnotationAssertion( "MeDIP-SEQ assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "Sanger sequencing"^^xsd:string) -AnnotationAssertion( "adapted from wikipedia"^^xsd:string) -AnnotationAssertion( "dye terminator sequencing"^^xsd:string) + +# Class: (chain termination sequencing) + +AnnotationAssertion( "chain termination sequencing"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "is a DNA sequencing which rely on the use of dideoxynucleotides used in 4 distinct sequencing reaction on the same DNA sample. The dideoxynucleotides, once incorporated in the complementary DNA strand being synthesized by the DNA polymerase prevent any further chain elongation. The newly generated sequences are resolved on a polyacrylamide gel using electrophoresis and labels (either fluorochrome or radioactivity) are used to determine the nucleotide present at a given position"^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "chain termination sequencing"^^xsd:string) +AnnotationAssertion( "Sanger sequencing"^^xsd:string) +AnnotationAssertion( "dye terminator sequencing"^^xsd:string) +AnnotationAssertion( "adapted from wikipedia"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "chain termination sequencing"^^xsd:string) +AnnotationAssertion(rdfs:label "chain termination sequencing"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "true single molecule sequencing"^^xsd:string) + +# Class: (Helicos sequencing) + AnnotationAssertion( "Helicos sequencing"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "is a DNA sequencing which allows sequence identification of billions of DNA molecules immobilized to a surface by using DNA polymerase and fluorescently labeled nucleotides added one at a time. The sequencing process does not requires amplification step and is typically able to produce reads of 25 base pair length."^^xsd:string) -AnnotationAssertion(rdfs:label "Helicos sequencing"^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "true single molecule sequencing"^^xsd:string) AnnotationAssertion( "adapted from wikipedia"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Helicos sequencing"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "decision tree induction objective"^^xsd:string) -AnnotationAssertion( "James Malone"^^xsd:string) + +# Class: (decision tree induction objective) + AnnotationAssertion( "decision tree induction objective"^^xsd:string) -AnnotationAssertion( "A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A decision tree induction objective is a data transformation objective in which a tree-like graph of edges and nodes is created and from which the selection of each branch requires that some type of logical decision is made."^^xsd:string) +AnnotationAssertion( "James Malone"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "decision tree induction objective"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "Edman degradation"^^xsd:string) -AnnotationAssertion( "PMID 4773306. Niall HD (1973). \"Automated Edman degradation: the protein sequenator\". Meth. Enzymol. 27: 942-1010"^^xsd:string) + +# Class: (Edman degradation) + AnnotationAssertion( "Edman degradation"^^xsd:string) +AnnotationAssertion( "PMID 4773306. Niall HD (1973). \"Automated Edman degradation: the protein sequenator\". Meth. Enzymol. 27: 942-1010"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "is a process which produces a sequence from an input peptide or protein. In this process, the amino-terminal (N-terminal) residue is labeled and cleaved from the peptide without disrupting the peptide bonds between other amino acid residues."^^xsd:string) AnnotationAssertion( "adapted from Wikipedia (http://en.wikipedia.org/wiki/Edman_degradation)"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "Edman degradation"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "SOLiD sequencing"^^xsd:string) + +# Class: (SOLiD sequencing) + +AnnotationAssertion( "SOLiD sequencing"^^xsd:string) +AnnotationAssertion( "PMID: 19119315. High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K. PLoS One. 2009;4(1):e4108."^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "adapted from Wikipedia and Applied Biosystems web site"^^xsd:string) -AnnotationAssertion( "SOLiD sequencing"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PMID: 19119315. High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer. Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K. PLoS One. 2009;4(1):e4108."^^xsd:string) +AnnotationAssertion(rdfs:label "SOLiD sequencing"^^xsd:string) SubClassOf( ) + +# Class: (laboratory animal care) + AnnotationAssertion( "laboratory animal care"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "a process that realizes an animal care protocol that specifies how animals are kept and maintained"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "laboratory animal care"^^xsd:string) SubClassOf( ) + +# Class: (library preparation) + AnnotationAssertion( "library preparation"^^xsd:string) -AnnotationAssertion( "library construction"^^xsd:string) +AnnotationAssertion( "PMID: 19570239. Construction and analysis of cotton (Gossypium arboreum L.) drought-related cDNA library. Zhang L, Li FG, Liu CL, Zhang CJ, Zhang XY. BMC Res Notes. 2009 Jul 2;2:120."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "is a process which results in the creation of a library from fragments of DNA using cloning vectors or oligonucleotides with the role of adaptors."^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "library preparation"^^xsd:string) -AnnotationAssertion( "PMID: 19570239. Construction and analysis of cotton (Gossypium arboreum L.) drought-related cDNA library. Zhang L, Li FG, Liu CL, Zhang CJ, Zhang XY. BMC Res Notes. 2009 Jul 2;2:120."^^xsd:string) +AnnotationAssertion( "library construction"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "library preparation"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "adapted from Wikipedia"^^xsd:string) + +# Class: (ChIP-seq assay) + +AnnotationAssertion( "ChIP-seq assay"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "an assay which aims at identifying protein binding sites in genomic DNA and determining how protein may regulate gene transcription by relying on immunoprecipitation of DNA bound protein, creation of a library of corresponding DNA fragments (either single or paired-end fragments) and subsequent sequencing using parallelized sequencing methods."^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "chromatin immunoprecipitation sequencing assay"^^xsd:string) +AnnotationAssertion( "adapted from Wikipedia"^^xsd:string) AnnotationAssertion( "made some modification based on the discussion on 2011/4/4 obi dev call, using DNA sequencing instead of union of some specific DNA sequencing processes"^^xsd:string) -AnnotationAssertion( "ChIP-seq assay"^^xsd:string) -AnnotationAssertion(rdfs:label "ChIP-seq assay"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "chromatin immunoprecipitation sequencing assay"^^xsd:string) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ChIP-seq assay"^^xsd:string) SubClassOf( ) + +# Class: (vaccine preparation) + AnnotationAssertion( "vaccine preparation"^^xsd:string) -AnnotationAssertion( "OBI"^^xsd:string) AnnotationAssertion( "The production of B. pertussis vaccine."^^xsd:string) -AnnotationAssertion(rdfs:label "vaccine preparation"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "vaccine preparation is a planned process with specified output a vaccine"^^xsd:string) +AnnotationAssertion( "OBI"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vaccine preparation"^^xsd:string) SubClassOf( ) + +# Class: (glucose tolerance test) + AnnotationAssertion( "glucose tolerance test"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "is a process in which following administration of a bolus a glucose in-vivo, glucose clearance from blood plasma is monitored over time by repeated glucose measurement in blood serum. the output of a process is a measure which can be used to evaluate the severity of insulin resistance or the efficiency of glucose clearance."^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "glucose tolerance test"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "NuGO OBI plan branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "glucose tolerance test"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) + +# Class: (DNA sequencing by ligation) + +AnnotationAssertion( "DNA sequencing by ligation"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "is a DNA sequencing which relies on DNA ligase activity to perform chain extension during the sequencing reaction step."^^xsd:string) -AnnotationAssertion( "DNA sequencing by ligation"^^xsd:string) +AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA sequencing by ligation"^^xsd:string) SubClassOf( ) + +# Class: (Solexa sequencing) + +AnnotationAssertion( "Solexa sequencing"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "is a DNA sequencing which allows sequence identification by relying on use of DNA polymerase and reversible terminator. The methods requires immobilization of genomic DNA fragment onto a surface and a specific clonal amplification step known as bridge PCR. Reliance on reversible terminator allow cycles of DNA chain extension by DNA polymerase and imaging without the need of electrophoretic separation of newly synthesized DNA fragment as with Sanger sequencing."^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "reversible terminator sequencing"^^xsd:string) AnnotationAssertion( "adapted from Wikipedia and Illumina / Solexa web site (SS_DNAsequencing.pdf document available on july 2009)"^^xsd:string) -AnnotationAssertion( "is a DNA sequencing which allows sequence identification by relying on use of DNA polymerase and reversible terminator. The methods requires immobilization of genomic DNA fragment onto a surface and a specific clonal amplification step known as bridge PCR. Reliance on reversible terminator allow cycles of DNA chain extension by DNA polymerase and imaging without the need of electrophoretic separation of newly synthesized DNA fragment as with Sanger sequencing."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Solexa sequencing"^^xsd:string) -AnnotationAssertion( "Solexa sequencing"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "Wikipedia (http://en.wikipedia.org/wiki/Pyrosequencing) and Roche 454 life science web site"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) + +# Class: (pyrosequencing) + AnnotationAssertion( "pyrosequencing"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "Wikipedia (http://en.wikipedia.org/wiki/Pyrosequencing) and Roche 454 life science web site"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pyrosequencing"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "is a DNA sequencing which relies on DNA polymerase activity to perform chain extension during the sequencing reaction step."^^xsd:string) + +# Class: (DNA sequencing by synthesis) + AnnotationAssertion( "DNA sequencing by synthesis"^^xsd:string) -AnnotationAssertion(rdfs:label "DNA sequencing by synthesis"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PMID: 18263613. A new class of cleavable fluorescent nucleotides: synthesis and optimization as reversible terminators for DNA sequencing by synthesis. Turcatti G, Romieu A, Fedurco M, Tairi AP. Nucleic Acids Res. 2008 Mar;36(4):e25."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "is a DNA sequencing which relies on DNA polymerase activity to perform chain extension during the sequencing reaction step."^^xsd:string) +AnnotationAssertion( "PERSON: Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA sequencing by synthesis"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "restriction enzyme based cloning"^^xsd:string) + +# Class: (restriction enzyme based cloning) + AnnotationAssertion( "restriction enzyme based cloning"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "restriction enzyme based cloning is a recombinant vector cloning process that has as an input genetic material that was cleaved with restriction enzymes, and a cloning vector that was cleaved with complementary restriction enzymes. It uses ligase to chemically join the input genetic material and the cloning vector to create a recombinant vector."^^xsd:string) AnnotationAssertion( "Kevin Clancy, Bjoern Peters"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "restriction enzyme based cloning"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "immune response assay"^^xsd:string) + +# Class: (immune response assay) + AnnotationAssertion( "immune response assay"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "an assay with the objective to determine information about an immune response"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "immune response assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "A specimen gathering process with the objective to obtain a specimen that is representative of the input material entity"^^xsd:string) + +# Class: (material sampling process) + +AnnotationAssertion( "material sampling process"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "material sampling process"^^xsd:string) +AnnotationAssertion( "A specimen gathering process with the objective to obtain a specimen that is representative of the input material entity"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "material sampling process"^^xsd:string) +AnnotationAssertion(rdfs:label "material sampling process"^^xsd:string) SubClassOf( ) + +# Class: (bisulfite sequencing) + AnnotationAssertion( "bisulfite sequencing"^^xsd:string) -AnnotationAssertion( "is a DNA sequencing which allows to determine the methylation status of genomic DNA using DNA sequencing techniques preceded by a bisulfite based chemical modification of genomic DNA at CpG island location."^^xsd:string) -AnnotationAssertion( "adapted from Wikipedia"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "bisulfite sequencing"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "is a DNA sequencing which allows to determine the methylation status of genomic DNA using DNA sequencing techniques preceded by a bisulfite based chemical modification of genomic DNA at CpG island location."^^xsd:string) AnnotationAssertion( "8/19/09: Chris says that there may used to be a way of doing bisulfite sequencing comparing lengths of restriction fragments, which implies that it is possible to do without DNA sequencing."^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "adapted from Wikipedia"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bisulfite sequencing"^^xsd:string) SubClassOf( ) + +# Class: (fluorescently labeled MHC multimer) + +AnnotationAssertion( "fluorescently labeled MHC multimer"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A complex of two or more linked MHC molecules including a fluorescent label that can be loaded with a ligand, and is used in flow cytometry assay to bind to T cell receptors of T cells specific for the ligand"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "fluorescently labeled MHC multimer"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "fluorescently labeled MHC multimer"^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (recombinant BAC cloning) + +AnnotationAssertion( "recombinant BAC cloning"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Bacterial_artificial_chromosome"^^xsd:string) AnnotationAssertion( "Recombinant BAC cloning is a process with the objective to insert genetic material into an F plasmid based bacterial artificial chromosome for future replication of the inserted material"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Bacterial_artificial_chromosome"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "recombinant BAC cloning"^^xsd:string) -AnnotationAssertion( "recombinant BAC cloning"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (double blind study execution) + AnnotationAssertion( "double blind study execution"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A double blind study execution is defined as any study execution in which neither the subjects nor the investigators are informed of which study arm the subjects are part of during the portion of the trial when the subjects are being treated"^^xsd:string) +AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) AnnotationAssertion( "http://clinicaltrials.gov/ct2/info/glossary#double"^^xsd:string) AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) -AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A double blind study execution is defined as any study execution in which neither the subjects nor the investigators are informed of which study arm the subjects are part of during the portion of the trial when the subjects are being treated"^^xsd:string) AnnotationAssertion(rdfs:label "double blind study execution"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON:Frank Gibson"^^xsd:string) -AnnotationAssertion( "A measurement device with the function to measure and record the level/amount of glucose in a blood sample"^^xsd:string) + +# Class: (glucometer) + AnnotationAssertion( "glucometer"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Glucose_meter"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "Diabetic patients use glucometers to determine their glucose levels"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A measurement device with the function to measure and record the level/amount of glucose in a blood sample"^^xsd:string) +AnnotationAssertion( "PERSON:Frank Gibson"^^xsd:string) AnnotationAssertion( "PERSON:Helen Parkinson"^^xsd:string) AnnotationAssertion( "glucose meter"^^xsd:string) -AnnotationAssertion(rdfs:label "glucometer"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Glucose_meter"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "glucometer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "recombinant phage cloning"^^xsd:string) + +# Class: (recombinant phage cloning) + +AnnotationAssertion( "recombinant phage cloning"^^xsd:string) +AnnotationAssertion( "Insert selection by BamHI methyltransferase protection in P1 phage-based cloning"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "Recombinant phage cloning is the process of using a phage plus some insert nucleic acid for the purposes of amplification of the insert material achieved by phage assembly in vitro."^^xsd:string) AnnotationAssertion( "Helen Parkinson"^^xsd:string) AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mcb.section.1611"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "recombinant phage cloning"^^xsd:string) -AnnotationAssertion( "Recombinant phage cloning is the process of using a phage plus some insert nucleic acid for the purposes of amplification of the insert material achieved by phage assembly in vitro."^^xsd:string) -AnnotationAssertion( "Insert selection by BamHI methyltransferase protection in P1 phage-based cloning"^^xsd:string) +AnnotationAssertion(rdfs:label "recombinant phage cloning"^^xsd:string) SubClassOf( ) + +# Class: (cross linking) + +AnnotationAssertion( "cross linking"^^xsd:string) +AnnotationAssertion( "cross linking can be used as a probe to link proteins together, to check protein protein interactions"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Chris Stoeckert"^^xsd:string) -AnnotationAssertion(rdfs:label "cross linking"^^xsd:string) AnnotationAssertion( "A process in which bonds are created that link one polymer to another"^^xsd:string) -AnnotationAssertion( "cross linking can be used as a probe to link proteins together, to check protein protein interactions"^^xsd:string) -AnnotationAssertion( "cross linking"^^xsd:string) +AnnotationAssertion( "PERSON: Chris Stoeckert"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Cross-link"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cross linking"^^xsd:string) SubClassOf( ) + +# Class: (prothrombin time assay) + +AnnotationAssertion( "prothrombin time assay"^^xsd:string) AnnotationAssertion( "PMID:19696660#The prothrombin time (PT) was quantitatively determined using RecombiPlasTin (Instrumentation Laboratory Company, Lexington, Massachusetts, USA)."^^xsd:string) -AnnotationAssertion( "2009/10/18 Alan Ruttenberg. This assay was added during the fucoidan use case exercise but still needs to be fleshed out. Only the AT-III assay has more carefully specified inputs and outputs"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Prothrombin_time@2009/10/06"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "The prothrombin time is an assay most commonly measured using blood plasma. Blood is drawn into a test tube containing liquid citrate, which acts as an anticoagulant by binding the calcium in a sample. The blood is mixed, then centrifuged to separate blood cells from plasma. In newborns, whole blood is used. The plasma is analyzed by a biomedical scientist on an automated instrument at 37 degrees C, which takes a sample of the plasma. An excess of calcium is added (thereby reversing the effects of citrate), which enables the blood to clot again. For an accurate measurement the proportion of blood to citrate needs to be fixed; many laboratories will not perform the assay if the tube is underfilled and contains a relatively high concentration of citrate. If the tube is underfilled or overfilled with blood, the standardized dilution of 1 part anticoagulant to 9 parts whole blood is no longer valid. For the prothrombin time test the appropriate sample is the blue top tube, or sodium citrate tube, which is a liquid anticoagulant. Tissue factor (also known as factor III or thromboplastin) is added, and the time the sample takes to clot is measured optically. Some laboratories use a mechanical measurement, which eliminates interferences from lipemic and icteric samples. The prothrombin ratio is the prothrombin time for a patient, divided by the result for control plasma."^^xsd:string) +AnnotationAssertion( "2009/10/18 Alan Ruttenberg. This assay was added during the fucoidan use case exercise but still needs to be fleshed out. Only the AT-III assay has more carefully specified inputs and outputs"^^xsd:string) AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) -AnnotationAssertion(rdfs:label "prothrombin time assay"^^xsd:string) +AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Prothrombin_time@2009/10/06"^^xsd:string) AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) -AnnotationAssertion( "prothrombin time assay"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "prothrombin time assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "Is a process in which the tertiary or secondary structure of a polymer is disrupted"^^xsd:string) -AnnotationAssertion( ) + +# Class: (denaturing) + +AnnotationAssertion( "denaturing"^^xsd:string) AnnotationAssertion( "Denaturing DNA in alcohol"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "Is a process in which the tertiary or secondary structure of a polymer is disrupted"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Denaturation_%28biochemistry%29"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "denaturing"^^xsd:string) -AnnotationAssertion( "denaturing"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "micro electrode"^^xsd:string) -AnnotationAssertion( "micro electrode measuring device"^^xsd:string) -AnnotationAssertion( "Helen Parkinson, Jessica Turner, Dirk Derom"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "An electrode of very fine caliber consisting usually of a fine wire or a glass tube of capillary diameter drawn to a fine point and filled with saline or a metal used in physiological experiments to stimulate or record action currents of extracellular or intracellular origin in the nervous system."^^xsd:string) -AnnotationAssertion( ) + +# Class: (micro electrode) + AnnotationAssertion( "micro electrode"^^xsd:string) AnnotationAssertion( "A micro-electrode recording device used to record extracellular action potentialsin monkey caudate nucleus"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "An electrode of very fine caliber consisting usually of a fine wire or a glass tube of capillary diameter drawn to a fine point and filled with saline or a metal used in physiological experiments to stimulate or record action currents of extracellular or intracellular origin in the nervous system."^^xsd:string) +AnnotationAssertion( "Helen Parkinson, Jessica Turner, Dirk Derom"^^xsd:string) +AnnotationAssertion( "micro electrode measuring device"^^xsd:string) AnnotationAssertion( "Jessica Turner, Dirk Derom"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "micro electrode"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) -AnnotationAssertion( "2009/10/18 Alan Ruttenberg. This assay was added during the fucoidan use case exercise but still needs to be fleshed out. Only the AT-III assay has more carefully specified inputs and outputs"^^xsd:string) + +# Class: (activated partial thromboplastin time (aPTT) assay) + AnnotationAssertion( "activated partial thromboplastin time (aPTT) assay"^^xsd:string) -AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Partial_thromboplastin_time@2008/10/06"^^xsd:string) -AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) +AnnotationAssertion( "PMID:19696660#The activated partial thromboplastin time (aPTT) was determined using Dade Actin FSL activated PTT reagent."^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "activated partial thromboplastin time (aPTT) assay"^^xsd:string) AnnotationAssertion( "An activated partial thromboplastin time (aPTT) assay is a an assay measuring the efficacy of both the 'intrinsic' (now referred to as the contact activation pathway) and the common coagulation pathways. In order to activate the intrinsic pathway, phospholipid, an activator (such as silica, celite, kaolin, ellagic acid), and calcium (to reverse the anticoagulant effect of the oxalate) are mixed into the plasma sample . The time is measured until a thrombus (clot) forms."^^xsd:string) +AnnotationAssertion( "2009/10/18 Alan Ruttenberg. This assay was added during the fucoidan use case exercise but still needs to be fleshed out. Only the AT-III assay has more carefully specified inputs and outputs"^^xsd:string) +AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) +AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Partial_thromboplastin_time@2008/10/06"^^xsd:string) +AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PMID:19696660#The activated partial thromboplastin time (aPTT) was determined using Dade Actin FSL activated PTT reagent."^^xsd:string) +AnnotationAssertion(rdfs:label "activated partial thromboplastin time (aPTT) assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "single blind study execution"^^xsd:string) + +# Class: (single blind study execution) + AnnotationAssertion( "single blind study execution"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A single blind study execution is defined as any study execution in which the subjects are not informed of which study arm they are part of during the portion of the trial when the subjects are being treated"^^xsd:string) +AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) AnnotationAssertion( "http://clinicaltrials.gov/ct2/info/glossary#single"^^xsd:string) AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "single blind study execution"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "thrombin time assay"^^xsd:string) + +# Class: (thrombin time assay) + +AnnotationAssertion( "thrombin time assay"^^xsd:string) AnnotationAssertion( "PMID:19696660#The thrombin time was determined using thromboclotin assay kit."^^xsd:string) -AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Thrombin_time@2009/10/06"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A thrombin time assay is on in which after liberating the plasma from whole blood by centrifugation, bovine Thrombin is added to the sample of plasma. The clot is formed and is detected optically or mechanically by a coagulation instrument. The time between the addition of the thrombin and the clot formation is recorded as the thrombin clotting time"^^xsd:string) AnnotationAssertion( "2009/10/18 Alan Ruttenberg. This assay was added during the fucoidan use case exercise but still needs to be fleshed out. Only the AT-III assay has more carefully specified inputs and outputs"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) +AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Thrombin_time@2009/10/06"^^xsd:string) AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) -AnnotationAssertion( "thrombin time assay"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "thrombin time assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "Recombinant YAC cloning is a process with the objective to insert genetic material into a yeast artificial chromosome vector for future replication of the inserted material"^^xsd:string) + +# Class: (recombinant YAC cloning) + +AnnotationAssertion( "recombinant YAC cloning"^^xsd:string) +AnnotationAssertion( "Isolation of a YAC clone covering a cluster of nine S100 genes on human chromosome 1q21"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mcb.section.1611"^^xsd:string) +AnnotationAssertion( "Recombinant YAC cloning is a process with the objective to insert genetic material into a yeast artificial chromosome vector for future replication of the inserted material"^^xsd:string) AnnotationAssertion( "Helen Parkinson"^^xsd:string) +AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mcb.section.1611"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "recombinant YAC cloning"^^xsd:string) AnnotationAssertion(rdfs:label "recombinant YAC cloning"^^xsd:string) -AnnotationAssertion( "Isolation of a YAC clone covering a cluster of nine S100 genes on human chromosome 1q21"^^xsd:string) SubClassOf( ) + +# Class: (treatment portion of study execution) + AnnotationAssertion( "treatment portion of study execution"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) AnnotationAssertion( "A planned process, part of a study design execution, during which the treatment of subjects is ongoing"^^xsd:string) AnnotationAssertion( "09/28/2009 Alan Ruttenberg. Needed because we have to have a process to scope blinding over"^^xsd:string) +AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) +AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "treatment portion of study execution"^^xsd:string) -AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) SubClassOf( ) + +# Class: (unblinding process) + AnnotationAssertion( "unblinding process"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) -AnnotationAssertion( "The part of the study execution in which the subjects are told what study arm they are in and in which the investigators are told which subjects are in which trials"^^xsd:string) -AnnotationAssertion(rdfs:label "unblinding process"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "The part of the study execution in which the subjects are told what study arm they are in and in which the investigators are told which subjects are in which trials"^^xsd:string) +AnnotationAssertion( "Person:Alan Ruttenberg"^^xsd:string) AnnotationAssertion( "2009/09/28 Alan Ruttenberg. Fucoidan-use-case"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "unblinding process"^^xsd:string) SubClassOf( ) + +# Class: (western blot analysis) + AnnotationAssertion( "western blot analysis"^^xsd:string) -AnnotationAssertion( "person: Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "PMID: 6266278. \"Western blotting\": electrophoretic transfer of proteins from sodium dodecyl sulfate--polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A. Anal Biochem. 1981 Apr;112(2):195-203"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "western blot analysis"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "a western blot analysis is an assay which allows detection of protein present in a extract resolved on polyacrylamide gel by electrophoresis, transfered to a membrane made of nitrocellulose or polyvinylidene difluoride and immobilized using formaldehyde based cross linking. Specific proteins are probed using specific antibodies. detection is carried by staining with secondary antibody usually linked to biotin or to a reporter enzyme such as alkaline phosphatase or horseradish peroxidase. This means that several secondary antibodies will bind to one primary antibody and enhance the signal. Most commonly, a horseradish peroxidase-linked secondary is used to cleave a chemiluminescent agent, and the reaction product produces luminescence in proportion to the amount of protein. Detection can only be achieved by radio marking antibodies and using Phosphor imagers."^^xsd:string) +AnnotationAssertion( "person: Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "protein immunoblotting"^^xsd:string) AnnotationAssertion( "wikipedia"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "western blot analysis"^^xsd:string) SubClassOf( ) + +# Class: (Southern blot analysis) + +AnnotationAssertion( "Southern blot analysis"^^xsd:string) AnnotationAssertion( "PMID: 9452032. Germline mutations detected in the von Hippel-Lindau disease tumor suppressor gene by Southern blot and direct genomic DNA sequencing. Li C, Weber G, Ekman P, Lagercrantz J, Norlen BJ, Akerström G, Nordenskjöld M, Bergerheim US. Hum Mutat. 1998;Suppl 1:S31-3."^^xsd:string) -AnnotationAssertion( "Southern blot"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "OBI & Wikipedia"^^xsd:string) AnnotationAssertion( "Southern blot analysis is a an assay used in molecular biology to assert the presence/absence status of a specific DNA sequence in DNA samples. DNA samples to be assayed are first digested by restriction enzymes, fragments are then resolved by gel electrophoresis following by a blotting ensuring transfer to nitrocellulose or nylon membrane. Immobilization of DNA fragments to the membrane is achieved by UV crosslinking and/or baking. Probes raised against the specific sequences are then hybridized to the membrane. Detection of hybridization signals is carried out by immunofluorescence or radioactivity measurements using photographic films or digital imaging devices such as Phosphor Imager."^^xsd:string) AnnotationAssertion( "Person: Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "Southern blot analysis"^^xsd:string) +AnnotationAssertion( "Southern blot"^^xsd:string) +AnnotationAssertion( "OBI & Wikipedia"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "Southern blot analysis"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON:Randi Vita, Bjoern Peters"^^xsd:string) -AnnotationAssertion( "An assay that uses a flow cytometer to detect fluorescence in individual particles that flow by a laser in solution."^^xsd:string) -AnnotationAssertion( ""^^xsd:string) + +# Class: (flow cytometry assay) + +AnnotationAssertion( "flow cytometry assay"^^xsd:string) AnnotationAssertion( "Using a flow cytometer to quantitate the percent of CD3 positive cells in a population by labeling them with a FITC tagged anti-CD3 antibody."^^xsd:string) -AnnotationAssertion( ""^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "flow cytometry assay"^^xsd:string) +AnnotationAssertion( "An assay that uses a flow cytometer to detect fluorescence in individual particles that flow by a laser in solution."^^xsd:string) +AnnotationAssertion( ""^^xsd:string) +AnnotationAssertion( "PERSON:Randi Vita, Bjoern Peters"^^xsd:string) +AnnotationAssertion( ""^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "flow cytometry assay"^^xsd:string) SubClassOf( ) + +# Class: (animal euthanization) + AnnotationAssertion( "animal euthanization"^^xsd:string) +AnnotationAssertion( "Rats were euthanized with CO2"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A process in which is the end of life of animal is brought about in accordance with local regulations on treatment of animal subjects and using a method which causes minimal pain and distress to the animal subject"^^xsd:string) -AnnotationAssertion( "Melissa Haendel"^^xsd:string) AnnotationAssertion( "Helen Parkinson and Melissa Haendel"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "animal sacrifice"^^xsd:string) -AnnotationAssertion(rdfs:label "animal euthanization"^^xsd:string) +AnnotationAssertion( "Melissa Haendel"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:comment "may later be refined with more specific list of organisms"^^xsd:string) -AnnotationAssertion( "Rats were euthanized with CO2"^^xsd:string) +AnnotationAssertion(rdfs:label "animal euthanization"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "surface plasmon resonance assay"^^xsd:string) -AnnotationAssertion( "SPR assay"^^xsd:string) + +# Class: (surface plasmon resonance assay) + +AnnotationAssertion( "surface plasmon resonance assay"^^xsd:string) AnnotationAssertion( "Running a Biacore instrument to measure the affinity, on and off rates of binding of a plate bound antibody to a antigen passing by in flow."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) -AnnotationAssertion( "surface plasmon resonance assay"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "SPR assay"^^xsd:string) AnnotationAssertion( "IEDB"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "surface plasmon resonance assay"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) -AnnotationAssertion(rdfs:label "calorimeter"^^xsd:string) + +# Class: (calorimeter) + +AnnotationAssertion( "calorimeter"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "http://chemistry.about.com/od/chemistryglossary/a/calorimeterdef.htm"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "A measurement device that is used to calculate the heat flow of a chemical reaction or physical change."^^xsd:string) -AnnotationAssertion( "calorimeter"^^xsd:string) +AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) AnnotationAssertion( "calorimetry instrument
"^^xsd:string) +AnnotationAssertion( "http://chemistry.about.com/od/chemistryglossary/a/calorimeterdef.htm"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "calorimeter"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Positron_emission_tomography"^^xsd:string) -AnnotationAssertion(rdfs:label "positron emission tomography scanner"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (positron emission tomography scanner) + AnnotationAssertion( "positron emission tomography scanner"^^xsd:string) -AnnotationAssertion( "PET scanner
"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) +AnnotationAssertion( "PET scanner
"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Positron_emission_tomography"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "positron emission tomography scanner"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "micromanipulator"^^xsd:string) + +# Class: (micromanipulator) + AnnotationAssertion( "micromanipulator"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Micromanipulator"^^xsd:string) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Micromanipulator"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "micromanipulator"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "optical microscope"^^xsd:string) + +# Class: (optical microscope) + AnnotationAssertion( "optical microscope"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A microscope that produces an image of an object by targeting it with an electro-magnetic beam in the visible frequency range"^^xsd:string) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A microscope that produces an image of an object by targeting it with an electro-magnetic beam in the visible frequency range"^^xsd:string) +AnnotationAssertion(rdfs:label "optical microscope"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "vibration isolation table"^^xsd:string) -AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) + +# Class: (vibration isolation table) + AnnotationAssertion( "vibration isolation table"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that supports another device such as a precision instrument by isolating it from vibration that is transmitted from the floor."^^xsd:string) +AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) AnnotationAssertion( "United States Patent 6877711"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vibration isolation table"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "sterilization function"^^xsd:string) + +# Class: (sterilization function) + AnnotationAssertion( "sterilization function"^^xsd:string) -AnnotationAssertion( "a function to remove viable organisms from an input material"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "a function to remove viable organisms from an input material"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sterilization function"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "oscilloscope"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (oscilloscope) + AnnotationAssertion( "oscilloscope"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that measures and displayes signal voltages, usually as a two-dimensional graph of one or more electrical potential differences (vertical axis) plotted as a function of time or of some other voltage (horizontal axis)."^^xsd:string) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Oscilloscope"^^xsd:string) -AnnotationAssertion( "A device that measures and displayes signal voltages, usually as a two-dimensional graph of one or more electrical potential differences (vertical axis) plotted as a function of time or of some other voltage (horizontal axis)."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oscilloscope"^^xsd:string) SubClassOf( ) + +# Class: (electrode puller) + +AnnotationAssertion( "electrode puller"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device used in the first step in making electrodes, that applies constant tension on a glass capillary tube and eventually breaks it while heating it; this produces a very fine point on the capillary tube."^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) AnnotationAssertion( "http://faculty.plattsburgh.edu/donald.slish/Puller1.html"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "electrode puller"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "electrode puller"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "vibrotome"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (vibrotome) + AnnotationAssertion( "vibrotome"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vibrotome"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "A function that is realized when a reagent is automatically added to some research material."^^xsd:string) -AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) + +# Class: (reagent application function) + AnnotationAssertion( "reagent application function"^^xsd:string) -AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) +AnnotationAssertion( "An automatic tissue processor automatically applies antibodies and buffers to histological tissue preparations."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A function that is realized when a reagent is automatically added to some research material."^^xsd:string) +AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) +AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) AnnotationAssertion( "4/10/2011: It is unclear if we need / want this, or what this is supposed to be for. Lots of the functions we have are reagent specific. Will this only confuse people?"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "An automatic tissue processor automatically applies antibodies and buffers to histological tissue preparations."^^xsd:string) AnnotationAssertion(rdfs:label "reagent application function"^^xsd:string) SubClassOf( ) + +# Class: (addition of molecular tracer function) + AnnotationAssertion( "addition of molecular tracer function"^^xsd:string) AnnotationAssertion( "Immunohistochemical labeling of tissue sections by an autostainer staining system."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A reagent application function that is realized when a molecular tracer, such as an antibody or probe is automatically transferred to a biological specimen."^^xsd:string) +AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) +AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "addition of molecular tracer function"^^xsd:string) -AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) -AnnotationAssertion( "PERSON: Nicole Vasilevsky, Matthew Brush"^^xsd:string) -AnnotationAssertion( "A reagent application function that is realized when a molecular tracer, such as an antibody or probe is automatically transferred to a biological specimen."^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "CT scanner"^^xsd:string) + +# Class: (computed tomography scanner) + AnnotationAssertion( "computed tomography scanner"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) -AnnotationAssertion(rdfs:label "computed tomography scanner"^^xsd:string) +AnnotationAssertion( "CT scanner"^^xsd:string) AnnotationAssertion( "X-ray computed tomography scanner"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "http://en.wikipedia.org/wiki/X-ray_computed_tomography"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "computed tomography scanner"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "03/21/2010: Added because it is unclear if the thermal cycler definition is intentionally broader than PCR instrument. Contacted Melanie and Trish about this. Definitions and use of alternative terms need to be made consistent."^^xsd:string) -AnnotationAssertion( "A device that is used to amplify a single or few copies of a piece of DNA across several orders of magnitude, generating thousands to millions of copies of a particular DNA sequence."^^xsd:string) -AnnotationAssertion( ""^^xsd:string) + +# Class: (PCR instrument) + AnnotationAssertion( "PCR instrument"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to amplify a single or few copies of a piece of DNA across several orders of magnitude, generating thousands to millions of copies of a particular DNA sequence."^^xsd:string) +AnnotationAssertion( "03/21/2010: Added because it is unclear if the thermal cycler definition is intentionally broader than PCR instrument. Contacted Melanie and Trish about this. Definitions and use of alternative terms need to be made consistent."^^xsd:string) +AnnotationAssertion( ""^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "PCR instrument"^^xsd:string) SubClassOf( ) + +# Class: (electron microscope) + +AnnotationAssertion( "electron microscope"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A microscope that produces an image of an object by targeting it with an electron beam"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "electron microscope"^^xsd:string) -AnnotationAssertion( "electron microscope"^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) -AnnotationAssertion( "A device formed by conducting material or by a mesh of such material, that blocks out external static electric fields."^^xsd:string) -AnnotationAssertion( "isolation function? HP"^^xsd:string) -AnnotationAssertion( "Wikipedia http://en.wikipedia.org/wiki/Faraday_cage"^^xsd:string) + +# Class: (Faraday cage) + +AnnotationAssertion( "Faraday cage"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "Faraday cage"^^xsd:string) +AnnotationAssertion( "A device formed by conducting material or by a mesh of such material, that blocks out external static electric fields."^^xsd:string) +AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) AnnotationAssertion( "Faraday shield"^^xsd:string) +AnnotationAssertion( "Wikipedia http://en.wikipedia.org/wiki/Faraday_cage"^^xsd:string) +AnnotationAssertion( "isolation function? HP"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Faraday cage"^^xsd:string) +AnnotationAssertion(rdfs:label "Faraday cage"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "a function that allows specific identification of individual speciment from one another."^^xsd:string) -AnnotationAssertion(rdfs:label "specimen fixation function"^^xsd:string) + +# Class: (specimen fixation function) + +AnnotationAssertion( "specimen fixation function"^^xsd:string) AnnotationAssertion( "e.g the function of a bar code reader used to read slide bar codes"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "EAGLE-I"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "specimen fixation function"^^xsd:string) +AnnotationAssertion( "a function that allows specific identification of individual speciment from one another."^^xsd:string) +AnnotationAssertion( "EAGLE-I"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "specimen fixation function"^^xsd:string) SubClassOf( ) + +# Class: (cell transfer function) + +AnnotationAssertion( "cell transfer function"^^xsd:string) +AnnotationAssertion( "A cell harvester has a cell transfer function."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "is a transfer function that displaces cells from one place to another"^^xsd:string) AnnotationAssertion( "EAGLE-I"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A cell harvester has a cell transfer function."^^xsd:string) -AnnotationAssertion( "cell transfer function"^^xsd:string) -AnnotationAssertion( "is a transfer function that displaces cells from one place to another"^^xsd:string) AnnotationAssertion(rdfs:label "cell transfer function"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (angiograph) + AnnotationAssertion( "angiograph"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "angiograph"^^xsd:string) -AnnotationAssertion( "http://medical-dictionary.thefreedictionary.com/angiograph"^^xsd:string) AnnotationAssertion( "A device that records the patterns of pulse waves inside blood vessels."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://medical-dictionary.thefreedictionary.com/angiograph"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "angiograph"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "http://www.biometra.de/"^^xsd:string) -AnnotationAssertion( ) + +# Class: (capillary blotter) + AnnotationAssertion( "capillary blotter"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to transfer nucleic acids from agarose gels onto a membrane, based on the movement of buffer from a reservoir through the gel and the blotting membrane to a stack of dry blotting paper by capillary force. The molecules are carried to the blotting membrane on which they are adsorbed."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://www.biometra.de/"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "capillary blotter"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bioreactor) + +AnnotationAssertion( "bioreactor"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device or system that supports a biologically active environment. ALAN SAYS NOT AN INSTRUMENT"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Bioreactor"^^xsd:string) -AnnotationAssertion( "A device or system that supports a biologically active environment. ALAN SAYS NOT AN INSTRUMENT"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "bioreactor"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "bioreactor"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "http://en.wikipedia.org/wiki/PH_meter"^^xsd:string) + +# Class: (pH meter) + +AnnotationAssertion( "pH meter"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to measure the pH (acidity or alkalinity) of a liquid."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/PH_meter"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "pH meter"^^xsd:string) -AnnotationAssertion( "pH meter"^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (digital camera) + +AnnotationAssertion( "digital camera"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "An image acquisition device that takes video or still photographs, or both, digitally by recording images via an electronic image sensor."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Digital_camera"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "digital camera"^^xsd:string) -AnnotationAssertion( "digital camera"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "An image acquisition device that takes video or still photographs, or both, digitally by recording images via an electronic image sensor."^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "chip spotting device"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "A device for dropping and immobilizing a solution of biomolecules, for example, nucleic acids such as probe DNA, mRNA, and peptide nucleic acid (PNA), and proteins on a DNA microarray surface to manufacture a DNA microarray."^^xsd:string) -AnnotationAssertion( ) + +# Class: (chip spotting device) + AnnotationAssertion( "chip spotting device"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device for dropping and immobilizing a solution of biomolecules, for example, nucleic acids such as probe DNA, mRNA, and peptide nucleic acid (PNA), and proteins on a DNA microarray surface to manufacture a DNA microarray."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "United States Patent 7416705"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "chip spotting device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (RNA extraction/purification instrument) + AnnotationAssertion( "RNA extraction/purification instrument"^^xsd:string) -AnnotationAssertion(rdfs:label "RNA extraction/purification instrument"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A device that is used to isolate and collect RNA for subsequent molecular analysis."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "RNA extraction/purification instrument"^^xsd:string) SubClassOf( ) + +# Class: (two-photon laser/detector) + +AnnotationAssertion( "two-photon laser/detector"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "A light source used in fluorescence imaging that allows the imaging of living tissue up to a depth of 1 mm, based on the concept that two photons of low energy can excite a fluorophore in a quantum event, resulting in the emission of a fluorescence photon, typically at a higher energy than either of the two excitatory photons."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Two-photon_excitation_microscopy"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "two-photon laser/detector"^^xsd:string) -AnnotationAssertion( "two-photon laser/detector"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "electrophoresis system"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Category:Electrophoresis"^^xsd:string) -AnnotationAssertion( "A device that moves charged particles through a medium by using an electric field induced by electrodes."^^xsd:string) + +# Class: (electrophoresis system) + AnnotationAssertion( "electrophoresis system"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device that moves charged particles through a medium by using an electric field induced by electrodes."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Category:Electrophoresis"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electrophoresis system"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "PET synthesizer"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (PET synthesizer) + +AnnotationAssertion( "PET synthesizer"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A device that is used to produce targeted molecular pharmaceuticals for use in positron emission tomography."^^xsd:string) -AnnotationAssertion( "PET synthesizer"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "PET synthesizer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (spinning-disk confocal microscope) + AnnotationAssertion( "spinning-disk confocal microscope"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A confocal microscope that uses a Nipkow disk, a mechanical, geometrically operating image scanning device."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "http://en.wikipedia.org/wiki/Nipkow_disk"^^xsd:string) -AnnotationAssertion(rdfs:label "spinning-disk confocal microscope"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "spinning-disk confocal microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DNA synthesizer) + AnnotationAssertion( "DNA synthesizer"^^xsd:string) -AnnotationAssertion( "An oligonucleotide synthesizer that is used to custom-build DNA molecules to contain a particular sequence of nucleotides."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "An oligonucleotide synthesizer that is used to custom-build DNA molecules to contain a particular sequence of nucleotides."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "DNA synthesizer"^^xsd:string) AnnotationAssertion( "http://www.globalspec.com/LearnMore/Labware_Scientific_Instruments/Clinical_Research_Labware/DNA_Synthesizers"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA synthesizer"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) + +# Class: (high performance liquid chromatography instrument) + AnnotationAssertion( "high performance liquid chromatography instrument"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A liquid chromatography instrument that consists of a reservoir of mobile phase, a pump, an injector, a separation column, and a detector. The pump (rather than gravity) provides the higher pressure required to propel the mobile phase and analyte through the densely packed column."^^xsd:string) -AnnotationAssertion(rdfs:label "high performance liquid chromatography instrument"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/High_performance_liquid_chromatography"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "high performance liquid chromatography instrument"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (microplate reader) + AnnotationAssertion( "microplate reader"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A measurement device that detects biological, chemical or physical events of samples in microtiter plates."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Plate_reader"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "microplate reader"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (ELISA microplate reader) + AnnotationAssertion( "ELISA microplate reader"^^xsd:string) -AnnotationAssertion(rdfs:label "ELISA microplate reader"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "A microplate reader that is used for enzyme-linked immunosorbent assays (ELISA)."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ELISA microplate reader"^^xsd:string) SubClassOf( ) + +# Class: (spot cutter) + +AnnotationAssertion( "spot cutter"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "A robotic device that is used to excise spots from gels."^^xsd:string) -AnnotationAssertion(rdfs:label "spot cutter"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "spot cutter"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "spot cutter"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A device that is used to apply microwave irradiation to chemical reactions."^^xsd:string) + +# Class: (microwave synthesis system) + +AnnotationAssertion( "microwave synthesis system"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to apply microwave irradiation to chemical reactions."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Microwave_chemistry"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "microwave synthesis system"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Microwave_chemistry"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "microwave synthesis system"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "densitometer"^^xsd:string) + +# Class: (densitometer) + AnnotationAssertion( "densitometer"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that measures the degree of darkness (the optical density) of a photographic or semitransparent material or of a reflecting surface."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Densitometer"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A device that measures the degree of darkness (the optical density) of a photographic or semitransparent material or of a reflecting surface."^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "densitometer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (automatic staining machine) + +AnnotationAssertion( "automatic staining machine"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to automatically stain tissue sections on slides or tissue specimens."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "automatic staining machine"^^xsd:string) -AnnotationAssertion( "automatic staining machine"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "automatic staining machine"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "United States Patent 3762362"^^xsd:string) + +# Class: (automatic tissue processor) + +AnnotationAssertion( "automatic tissue processor"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "A device for processing histological tissue having a tissue carrier basket suspended from a turntable overlying a plurality of beakers suspended from a carrier plate. The turntable is raised, indexed, and lowered by a suitable driving mechanism to move the tissue basket sequentially through the beakers. Timers can each be programmed to control the movement of the turntable to provide various different cycles for processing the tissue. Some of the beakers are received in individual thermal baths to heat and control the temperature of the substances received in the beakers for treating the tissue."^^xsd:string) -AnnotationAssertion( "automatic tissue processor"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "United States Patent 3762362"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "automatic tissue processor"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (stereo microscope) + +AnnotationAssertion( "stereo microscope"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "An optical microscope that uses two separate optical paths with two objectives and two eyepieces to provide slightly different viewing angles to the left and right eyes."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Optical_microscope#Stereo_microscope"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "stereo microscope"^^xsd:string) -AnnotationAssertion( "An optical microscope that uses two separate optical paths with two objectives and two eyepieces to provide slightly different viewing angles to the left and right eyes."^^xsd:string) -AnnotationAssertion( "stereo microscope"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (top loading balance) + AnnotationAssertion( "top loading balance"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A balance that consists of a metal plate on which to place an object and a digital readout of the measurement of its mass."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "top loading balance"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "A device or system in which perfusion units are integrated."^^xsd:string) + +# Class: (perfusion station) + AnnotationAssertion( "perfusion station"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "perfusion station"^^xsd:string) +AnnotationAssertion( "A device or system in which perfusion units are integrated."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "perfusion station"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "SPECT scanner"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Single_photon_emission_computed_tomography"^^xsd:string) + +# Class: (SPECT scanner) + AnnotationAssertion( "SPECT scanner"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "A nuclear medicine tomographic imaging device that uses gamma rays to provide 3D information, typically presented as cross-sectional slices through the specimen but with the ability to be freely reformatted or manipulated as required."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Single_photon_emission_computed_tomography"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "SPECT scanner"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (scintillation counter) + +AnnotationAssertion( "scintillation counter"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to measure ionizing radiation."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Scintillation_counter"^^xsd:string) -AnnotationAssertion( "scintillation counter"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "scintillation counter"^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (programmable array microscope) + AnnotationAssertion( "programmable array microscope"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A confocal microscope that uses a programmable spatial light modulator for generating an arbitrary pattern of conjugate illumination and detection apertures."^^xsd:string) -AnnotationAssertion( "Verveer et al, Journal of Microscopy, vol. 189, pt. 3, pp. 192-8"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "programmable array microscope"^^xsd:string) +AnnotationAssertion( "Verveer et al, Journal of Microscopy, vol. 189, pt. 3, pp. 192-8"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "programmable array microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (cryostat) + AnnotationAssertion( "cryostat"^^xsd:string) -AnnotationAssertion( "A device consisting of a vessel, similar in construction to a vacuum flask, that is used to maintain cold cryogenic temperatures. FIX THIS DEFINITION"^^xsd:string) -AnnotationAssertion(rdfs:label "cryostat"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "A device consisting of a vessel, similar in construction to a vacuum flask, that is used to maintain cold cryogenic temperatures. FIX THIS DEFINITION"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Cryostat"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cryostat"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microtome knife maker"^^xsd:string) + +# Class: (microtome knife maker) + AnnotationAssertion( "microtome knife maker"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A glass cutting and breaking device that is used to produce glass knives used in ultramicrotomy."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microtome knife maker"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (cryofixation device) + AnnotationAssertion( "cryofixation device"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Cryofixation"^^xsd:string) AnnotationAssertion( "A device that is used for the fixation or stabilization of biological materials as the first step in specimen preparation for electron microscopy."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Cryofixation"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cryofixation device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (hybridization oven) + AnnotationAssertion( "hybridization oven"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "hybridization oven"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "A device that creates an appropriate environment for nucleic acid hybridization."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hybridization oven"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "An incubating device that provides shaking motion for biomedical applications (e.g., cell cultures)."^^xsd:string) + +# Class: (incubator shaker) + +AnnotationAssertion( "incubator shaker"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "An incubating device that provides shaking motion for biomedical applications (e.g., cell cultures)."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "incubator shaker"^^xsd:string) -AnnotationAssertion( "incubator shaker"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (small-animal image acquisition device) + AnnotationAssertion( "small-animal image acquisition device"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to image¬†small¬†laboratory¬†animals (e.g., rats and mice) in vivo."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "small-animal image acquisition device"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A device that is used to image¬†small¬†laboratory¬†animals (e.g., rats and mice) in vivo."^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "small-animal image acquisition device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (infrared image acquisition device) + +AnnotationAssertion( "infrared image acquisition device"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "An image acquisition device that is responsive to an infrared emissive target within a given field of view."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "United States Patent 4107530"^^xsd:string) -AnnotationAssertion(rdfs:label "infrared image acquisition device"^^xsd:string) -AnnotationAssertion( "infrared image acquisition device"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "infrared image acquisition device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Confocal_microscopy"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (confocal microscope) + AnnotationAssertion( "confocal microscope"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A microscope that is used to increase micrograph contrast and/or reconstruct three-dimensional images by using a spatial pinhole to eliminate out-of-focus light in specimens that are thicker than the focal plane."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Confocal_microscopy"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "confocal microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Patch_clamp"^^xsd:string) + +# Class: (patch clamp device) + AnnotationAssertion( "patch clamp device"^^xsd:string) -AnnotationAssertion(rdfs:label "patch clamp device"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "A device used in electrophysiology that allows the study of single or multiple ion channels in cells."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Patch_clamp"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "patch clamp device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "gel imaging system"^^xsd:string) -AnnotationAssertion( "A device that is used to acquire images of laboratory gels."^^xsd:string) + +# Class: (gel imaging system) + AnnotationAssertion( "gel imaging system"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to acquire images of laboratory gels."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gel imaging system"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (protein separation apparatus) + +AnnotationAssertion( "protein separation apparatus"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A device that is used for the separation of proteins."^^xsd:string) -AnnotationAssertion(rdfs:label "protein separation apparatus"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "protein separation apparatus"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protein separation apparatus"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "http://www.faqs.org/patents/app/20090196797"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (multichannel electronic pipette) + AnnotationAssertion( "multichannel electronic pipette"^^xsd:string) -AnnotationAssertion(rdfs:label "multichannel electronic pipette"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A multichannel pipette that can be programmed by the user to aspirate a volume of liquid reagent or sample and dispense the aspirated volume or a series of aliquots in successive dispensing operations."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://www.faqs.org/patents/app/20090196797"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "multichannel electronic pipette"^^xsd:string) SubClassOf( ) -AnnotationAssertion(rdfs:label "vitrification apparatus"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Glass_transition"^^xsd:string) -AnnotationAssertion( ) + +# Class: (vitrification apparatus) + AnnotationAssertion( "vitrification apparatus"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to effect the transition of a substance into a glass."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Glass_transition"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vitrification apparatus"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (radiography instrument) + AnnotationAssertion( "radiography instrument"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Medical_radiography"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "An image acquisition device that uses ionizing electromagnetic radiation such as X-rays to view objects."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "radiography instrument"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Medical_radiography"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "An image acquisition device that uses ionizing electromagnetic radiation such as X-rays to view objects."^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "radiography instrument"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (radiation measurement device) + +AnnotationAssertion( "radiation measurement device"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A device that consists of a radiosensitive detector and a means of recording the effects of radiation on the detector."^^xsd:string) -AnnotationAssertion( "radiation measurement device"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "radiation measurement device"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "radiation measurement device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (lyophilizer) + +AnnotationAssertion( "lyophilizer"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "lyophilizer"^^xsd:string) +AnnotationAssertion( "A device that is used to freeze dry material."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "lyophilizer"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Freeze_drying"^^xsd:string) -AnnotationAssertion( "A device that is used to freeze dry material."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lyophilizer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (tandem mass spectrometer) + +AnnotationAssertion( "tandem mass spectrometer"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A mass spectrometer in which ions are subjected to two or more sequential stages of analysis (which may be separated spatially or temporally) according to the quotient mass/charge."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://goldbook.iupac.org/T06250.html"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tandem mass spectrometer"^^xsd:string) -AnnotationAssertion( "tandem mass spectrometer"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "A hardness testing device that is used in light-optical microscopes."^^xsd:string) -AnnotationAssertion(rdfs:label "microhardness tester"^^xsd:string) -AnnotationAssertion( ) + +# Class: (microhardness tester) + AnnotationAssertion( "microhardness tester"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "United States Patent 4611487"^^xsd:string) +AnnotationAssertion( "A hardness testing device that is used in light-optical microscopes."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "United States Patent 4611487"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microhardness tester"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (multimode microplate reader) + +AnnotationAssertion( "multimode microplate reader"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "A microplate reader that can detect multiple types of absorbance, luminescence or fluorescence."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "multimode microplate reader"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "multimode microplate reader"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) SubClassOf( ) + +# Class: (mechanical balance) + +AnnotationAssertion( "mechanical balance"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "http://www.britannica.com/EBchecked/topic/49765/balance"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "A balance that is used to compare the weights of two bodies, to determine the difference in mass (or weight)."^^xsd:string) -AnnotationAssertion( "mechanical balance"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://www.britannica.com/EBchecked/topic/49765/balance"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "mechanical balance"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "computer cluster"^^xsd:string) + +# Class: (computer cluster) + AnnotationAssertion( "computer cluster"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Cluster_(computing)"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A group of linked computers, working together closely so that in many respects they form a single computer."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Cluster_(computing)"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "computer cluster"^^xsd:string) SubClassOf( ) + +# Class: (microtome knife sharpener) + +AnnotationAssertion( "microtome knife sharpener"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to sharpen knives used in microtomy."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "microtome knife sharpener"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "microtome knife sharpener"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A device that is used to sharpen knives used in microtomy."^^xsd:string) +AnnotationAssertion(rdfs:label "microtome knife sharpener"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (plate shaker) + +AnnotationAssertion( "plate shaker"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that provides shaking motion for microplates."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "plate shaker"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "A device that provides shaking motion for microplates."^^xsd:string) -AnnotationAssertion( "plate shaker"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "United States Patent 5439646"^^xsd:string) + +# Class: (coagulation analyzer) + +AnnotationAssertion( "coagulation analyzer"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device for automatically analyzing blood coagulation in a clinical laboratory."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "United States Patent 5439646"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "coagulation analyzer"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "coagulation analyzer"^^xsd:string) -AnnotationAssertion( "A device for automatically analyzing blood coagulation in a clinical laboratory."^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "laser capture microdissection microscope"^^xsd:string) + +# Class: (laser capture microdissection microscope) + +AnnotationAssertion( "laser capture microdissection microscope"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "A microscope that uses low-energy laser beams and special transfer film to lift single cells from a tissue."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "laser capture microdissection microscope"^^xsd:string) AnnotationAssertion( "http://www.answers.com/topic/laser-capture-microdissection-microscope-in-medicine"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "laser capture microdissection microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (liquid extraction robot) + AnnotationAssertion( "liquid extraction robot"^^xsd:string) -AnnotationAssertion(rdfs:label "liquid extraction robot"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "A liquid handling device that provides automatic liquid extraction."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "liquid extraction robot"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A device that is used to visualize subcutaneous body structures including tendons, muscles, joints, vessels and internal organs."^^xsd:string) -AnnotationAssertion(rdfs:label "ultrasound machine"^^xsd:string) + +# Class: (ultrasound machine) + AnnotationAssertion( "ultrasound machine"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Sonography"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to visualize subcutaneous body structures including tendons, muscles, joints, vessels and internal organs."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Sonography"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ultrasound machine"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (immunoblot scanner) + +AnnotationAssertion( "immunoblot scanner"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used for the imaging of immunoblots."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "immunoblot scanner"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "immunoblot scanner"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "microcentrifuge"^^xsd:string) -AnnotationAssertion( ) + +# Class: (microcentrifuge) + AnnotationAssertion( "microcentrifuge"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A type of centrifuge that is designed for small tubes (0.2 ml to 2.0 ml), has a compact design, and has a small footprint."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Laboratory_centrifuge"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Laboratory_centrifuge"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microcentrifuge"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( ) + +# Class: (electronic repeater pipette) + AnnotationAssertion( "electronic repeater pipette"^^xsd:string) -AnnotationAssertion(rdfs:label "electronic repeater pipette"^^xsd:string) -AnnotationAssertion( "http://www.faqs.org/patents/app/20090196797"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A micropipette that can be programmed by the user to aspirate a volume of liquid reagent or sample and dispense a series of aliquots in successive dispensing operations."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://www.faqs.org/patents/app/20090196797"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electronic repeater pipette"^^xsd:string) SubClassOf( ) + +# Class: (electron paramagnetic resonance spectrometer) + AnnotationAssertion( "electron paramagnetic resonance spectrometer"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Electron_paramagnetic_resonance"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "electron paramagnetic resonance spectrometer"^^xsd:string) AnnotationAssertion( "An spectrophotometer that is used to investigate chemical species that have one or more unpaired electrons, such as organic and inorganic free radicals or inorganic complexes possessing a transition metal ion."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Electron_paramagnetic_resonance"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electron paramagnetic resonance spectrometer"^^xsd:string) SubClassOf( ) + +# Class: (rocker) + +AnnotationAssertion( "rocker"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that provides three-dimensional motion for biomedical applications (e.g., gel trays)."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "rocker"^^xsd:string) -AnnotationAssertion(rdfs:label "rocker"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "rocker"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "analytical balance"^^xsd:string) + +# Class: (analytical balance) + +AnnotationAssertion( "analytical balance"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A balance with weighing pan(s) inside a transparent enclosure that is used to measure mass to a very high degree of precision and accuracy."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Weighing_scale"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "analytical balance"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "analytical balance"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "A microscope that forms images of surfaces using a physical probe that scans the specimen."^^xsd:string) + +# Class: (scanning force microscope) + +AnnotationAssertion( "scanning force microscope"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A microscope that forms images of surfaces using a physical probe that scans the specimen."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "scanning force microscope"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Scanning_probe_microscopy"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "scanning force microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "pulsed-field gel electrophoresis system"^^xsd:string) + +# Class: (pulsed-field gel electrophoresis system) + AnnotationAssertion( "pulsed-field gel electrophoresis system"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A gel electrophoresis system that is used to separate very large molecules of DNA."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Pulsed_field_gel_electrophoresis"^^xsd:string) -AnnotationAssertion( "A gel electrophoresis system that is used to separate very large molecules of DNA."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "pulsed-field gel electrophoresis system"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "A device that is used to perform paraffin embedding of tissue specimens."^^xsd:string) + +# Class: (tissue embedding station) + +AnnotationAssertion( "tissue embedding station"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "A device that is used to perform paraffin embedding of tissue specimens."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "tissue embedding station"^^xsd:string) -AnnotationAssertion( "tissue embedding station"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (bead array reader) + AnnotationAssertion( "bead array reader"^^xsd:string) -AnnotationAssertion(rdfs:label "bead array reader"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to acquire and image bead array data."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "bead array reader"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (real-time PCR machine) + AnnotationAssertion( "real-time PCR machine"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "real-time PCR machine"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "An PCR instrument that enables both detection and quantification of one or more specific sequences in a DNA sample."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Real-time_polymerase_chain_reaction"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "real-time PCR machine"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (paraffin oven) + +AnnotationAssertion( "paraffin oven"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used for the warming of paraffin embedding medium."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "paraffin oven"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "paraffin oven"^^xsd:string) -AnnotationAssertion( ) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A device that is used to sterilize equipment and supplies by subjecting them to high pressure steam at 121 C or more, typically for 15 to 20 minutes depending on the size of the load and the contents."^^xsd:string) + +# Class: (autoclave) + AnnotationAssertion( "autoclave"^^xsd:string) -AnnotationAssertion( "J. Black, Microbiology, Prentice Hall (1993) pg. 334; http://en.wikipedia.org/wiki/Autoclave"^^xsd:string) -AnnotationAssertion(rdfs:label "autoclave"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to sterilize equipment and supplies by subjecting them to high pressure steam at 121 C or more, typically for 15 to 20 minutes depending on the size of the load and the contents."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "J. Black, Microbiology, Prentice Hall (1993) pg. 334; http://en.wikipedia.org/wiki/Autoclave"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "autoclave"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (microplate washer) + AnnotationAssertion( "microplate washer"^^xsd:string) -AnnotationAssertion(rdfs:label "microplate washer"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "A device that is used to wash immunoassays in microwell strips and plates with professional accuracy. WHAT IS PROFESSIONAL ACCURACY??"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to wash immunoassays in microwell strips and plates with professional accuracy. WHAT IS PROFESSIONAL ACCURACY??"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://www.articlesnatch.com/Article/Microplate-Readers-And-Washers-For-Laboratories/948037"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microplate washer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "A device that is used to isolate and collect nucleic acids (DNA or RNA) for subsequent molecular analysis."^^xsd:string) + +# Class: (nucleic acid extraction/purification instrument) + +AnnotationAssertion( "nucleic acid extraction/purification instrument"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "nucleic acid extraction/purification instrument"^^xsd:string) +AnnotationAssertion( "A device that is used to isolate and collect nucleic acids (DNA or RNA) for subsequent molecular analysis."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "nucleic acid extraction/purification instrument"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleic acid extraction/purification instrument"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "ELISA microplate washer"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (ELISA microplate washer) + AnnotationAssertion( "ELISA microplate washer"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A microplate washer that is used for enzyme-linked immunosorbent assays (ELISA)."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ELISA microplate washer"^^xsd:string) SubClassOf( ) + +# Class: (vacuum manifold) + AnnotationAssertion( "vacuum manifold"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "vacuum manifold"^^xsd:string) AnnotationAssertion( "A device that is used for the vacuum-driven processing of multiwell strips or plates, or spin columns. IS THIS AN INSTRUMENT? IS THE DEFINTION CORRECT - TO DISTRIBUTE PRESSURE EVENLY."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "vacuum manifold"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (DNA extraction/purification instrument) + AnnotationAssertion( "DNA extraction/purification instrument"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to isolate and collect DNA for subsequent molecular analysis."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/DNA_extraction"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA extraction/purification instrument"^^xsd:string) SubClassOf( ) + +# Class: (multichannel pipette) + +AnnotationAssertion( "multichannel pipette"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A pipetting system that has a plurality of tip fittings and is used for multi-well plate applications."^^xsd:string) -AnnotationAssertion(rdfs:label "multichannel pipette"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "multichannel pipette"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "multichannel pipette"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A device that is used to harvest cells from microplates and deposit samples on a filter mat. NOT AN INSTRUMENT?"^^xsd:string) -AnnotationAssertion( ) + +# Class: (cell harvester) + AnnotationAssertion( "cell harvester"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to harvest cells from microplates and deposit samples on a filter mat. NOT AN INSTRUMENT?"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell harvester"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (portable fluorometer) + AnnotationAssertion( "portable fluorometer"^^xsd:string) -AnnotationAssertion( "A compact fluorometer that can be carried or moved with ease."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A compact fluorometer that can be carried or moved with ease."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "portable fluorometer"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (gel electrophoresis system) + AnnotationAssertion( "gel electrophoresis system"^^xsd:string) -AnnotationAssertion(rdfs:label "gel electrophoresis system"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "electrophoresis system"^^xsd:string) AnnotationAssertion( "A device that moves charged particles through a medium by using an electric field induced by electrodes."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "electrophoresis system"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Category:Electrophoresis"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gel electrophoresis system"^^xsd:string) SubClassOf( ) + +# Class: (diffractometer) + AnnotationAssertion( "diffractometer"^^xsd:string) -AnnotationAssertion( "A measurement device for analyzing the structure of a material from the scattering pattern produced when a beam of radiation or particles (e.g. X rays or neutrons) interacts with it."^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Diffractometer"^^xsd:string) +AnnotationAssertion( "A measurement device for analyzing the structure of a material from the scattering pattern produced when a beam of radiation or particles (e.g. X rays or neutrons) interacts with it."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Diffractometer"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "diffractometer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A device that is used for the dissection of tissues under magnification."^^xsd:string) + +# Class: (microdissection instrument) + +AnnotationAssertion( "microdissection instrument"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microdissection instrument"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "A device that is used for the dissection of tissues under magnification."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "microdissection instrument"^^xsd:string) AnnotationAssertion( "http://medical-dictionary.thefreedictionary.com/microdissection"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microdissection instrument"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "micropipette puller"^^xsd:string) + +# Class: (micropipette puller) + AnnotationAssertion( "micropipette puller"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Micropipette"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to fabricate glass micropipettes."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Micropipette"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "micropipette puller"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (laser scanning confocal microscope) + +AnnotationAssertion( "laser scanning confocal microscope"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A confocal microscope that obtains high-resolution optical images with depth selectivity, in which a laser beam passes through a light source aperture and then is focused by an objective lens into a small (ideally diffraction limited) focal volume within or on the surface of a specimen."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Confocal_laser_scanning_microscopy"^^xsd:string) -AnnotationAssertion( "A confocal microscope that obtains high-resolution optical images with depth selectivity, in which a laser beam passes through a light source aperture and then is focused by an objective lens into a small (ideally diffraction limited) focal volume within or on the surface of a specimen."^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "laser scanning confocal microscope"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "laser scanning confocal microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "digital microscope"^^xsd:string) + +# Class: (digital microscope) + +AnnotationAssertion( "digital microscope"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A microscope that uses optics and a charge-coupled device (CCD) camera to output a digital image to a monitor."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Digital_microscope"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A microscope that uses optics and a charge-coupled device (CCD) camera to output a digital image to a monitor."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "digital microscope"^^xsd:string) +AnnotationAssertion(rdfs:label "digital microscope"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A device or system for dehydrating and then chemically fixing electron microscopy samples at low temperatures in preparation for various treatments including embedding in resins."^^xsd:string) -AnnotationAssertion(rdfs:label "freeze substitution system"^^xsd:string) + +# Class: (freeze substitution system) + +AnnotationAssertion( "freeze substitution system"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A device or system for dehydrating and then chemically fixing electron microscopy samples at low temperatures in preparation for various treatments including embedding in resins."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "doi:10.1017/S143192760707866X"^^xsd:string) -AnnotationAssertion( "freeze substitution system"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "freeze substitution system"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "micropipette"^^xsd:string) -AnnotationAssertion( "A microinjection device that is used to measure very small volumes of liquids."^^xsd:string) + +# Class: (micropipette) + +AnnotationAssertion( "micropipette"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "A microinjection device that is used to measure very small volumes of liquids."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://www.answers.com/topic/micropipette"^^xsd:string) -AnnotationAssertion( "micropipette"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "micropipette"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Voltage_clamp"^^xsd:string) -AnnotationAssertion(rdfs:label "voltage clamp device"^^xsd:string) + +# Class: (voltage clamp device) + +AnnotationAssertion( "voltage clamp device"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to measure the ion currents across the membrane of excitable cells, such as neurons, while holding the membrane voltage at a set level."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Voltage_clamp"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A device that is used to measure the ion currents across the membrane of excitable cells, such as neurons, while holding the membrane voltage at a set level."^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "voltage clamp device"^^xsd:string) +AnnotationAssertion(rdfs:label "voltage clamp device"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (vacuum oven) + AnnotationAssertion( "vacuum oven"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "A device that heats materials in a vacuum."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vacuum oven"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (slide warmer) + AnnotationAssertion( "slide warmer"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "slide warmer"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A device that is used to heat microscope slides."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "slide warmer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (capillary electrophoresis instrument) + AnnotationAssertion( "capillary electrophoresis instrument"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Capillary_electrophoresis"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "An electrophoresis system that is used to separate ionic species by their charge and frictional forces and mass."^^xsd:string) -AnnotationAssertion(rdfs:label "capillary electrophoresis instrument"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Capillary_electrophoresis"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "capillary electrophoresis instrument"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion(rdfs:label "denaturing high-performance liquid chromatography instrument"^^xsd:string) + +# Class: (denaturing high-performance liquid chromatography instrument) + AnnotationAssertion( "denaturing high-performance liquid chromatography instrument"^^xsd:string) -AnnotationAssertion( "A high performance liquid chromatography instrument that employs temperature-dependent separation of DNA containing mismatched base pairs from PCR-amplified DNA fragments for chromatographic mutation analysis."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A high performance liquid chromatography instrument that employs temperature-dependent separation of DNA containing mismatched base pairs from PCR-amplified DNA fragments for chromatographic mutation analysis."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "doi:10.1385/1-59259-850-1:173"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "denaturing high-performance liquid chromatography instrument"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Agarose_gel_electrophoresis"^^xsd:string) -AnnotationAssertion(rdfs:label "agarose gel electrophoresis system"^^xsd:string) + +# Class: (agarose gel electrophoresis system) + AnnotationAssertion( "agarose gel electrophoresis system"^^xsd:string) -AnnotationAssertion( "A gel electrophoresis system that is used to separate DNA or RNA molecules by size, achieved by moving negatively charged nucleic acid molecules through an agarose matrix with an electric field."^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A gel electrophoresis system that is used to separate DNA or RNA molecules by size, achieved by moving negatively charged nucleic acid molecules through an agarose matrix with an electric field."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Agarose_gel_electrophoresis"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "agarose gel electrophoresis system"^^xsd:string) SubClassOf( ) + +# Class: (balance) + +AnnotationAssertion( "balance"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A measuring instrument that is used to determine the weight or mass of an object."^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "balance"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Weighing_scale"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "balance"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion(rdfs:label "surface plasmon resonance instrument"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) + +# Class: (surface plasmon resonance instrument) + AnnotationAssertion( "surface plasmon resonance instrument"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A tool for measuring adsorption of material onto planar metal (typically gold and silver) surfaces or onto the surface of metal nanoparticles."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/Surface_plasmon_resonance"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "surface plasmon resonance instrument"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( ) + +# Class: (protein sequencer) + +AnnotationAssertion( "protein sequencer"^^xsd:string) AnnotationAssertion( ) AnnotationAssertion( "An device that is used to determine the order of amino acids in protein sequences."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "protein sequencer"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) -AnnotationAssertion( "protein sequencer"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "x-ray generator"^^xsd:string) -AnnotationAssertion( "A device that is used to generate X-rays."^^xsd:string) + +# Class: (X-ray source) + AnnotationAssertion( "X-ray source"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A device that is used to generate X-rays."^^xsd:string) +AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) +AnnotationAssertion( "x-ray generator"^^xsd:string) AnnotationAssertion( "http://en.wikipedia.org/wiki/X-ray_generator"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "X-ray source"^^xsd:string) -AnnotationAssertion( "PERSON: Erik Segerdell"^^xsd:string) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "PERSON: Matthew Brush"^^xsd:string) -AnnotationAssertion( "PERSON: Matthew Brush"^^xsd:string) + +# Class: (liquid chromatography instrument) + AnnotationAssertion( "liquid chromatography instrument"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A chromatography device that dissolves a mixture in liquid mobile phase to separate the analyte to be measured from other molecules in the mixture and allows it to be isolated"^^xsd:string) +AnnotationAssertion( "PERSON: Matthew Brush"^^xsd:string) +AnnotationAssertion( "PERSON: Matthew Brush"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "liquid chromatography instrument"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "SNP microarray"@en) -AnnotationAssertion( "EFO_0002703 SNP array"^^xsd:string) -AnnotationAssertion( "a DNA microarray used to detect polymorphisms in DNA samples"^^xsd:string) + +# Class: (SNP microarray) + AnnotationAssertion( "SNP microarray"@en) -AnnotationAssertion( "Person: Helen Parkinson"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "a DNA microarray used to detect polymorphisms in DNA samples"^^xsd:string) +AnnotationAssertion( "Person: Helen Parkinson"^^xsd:string) +AnnotationAssertion( "EFO_0002703 SNP array"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "SNP microarray"@en) SubClassOf( ) + +# Class: (ChIP-chip assay) + +AnnotationAssertion( "ChIP-chip assay"@en) +AnnotationAssertion( ) AnnotationAssertion( "an assay that aims to investigate the interactions between protein and DNA relying on chromatin immunoprecipitation ('ChIP') combined with microarray technology ('chip'). Specially, it allows the identification of protein binding sites on a genome-wide basis."^^xsd:string) +AnnotationAssertion( "Person: James Malone"^^xsd:string) +AnnotationAssertion( "ChIP-on-chip assay"^^xsd:string) AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/ChIP-on-chip"^^xsd:string) -AnnotationAssertion(rdfs:comment "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "ChIP-chip assay"@en) AnnotationAssertion( ) -AnnotationAssertion( "ChIP-on-chip assay"^^xsd:string) -AnnotationAssertion( "Person: James Malone"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion(rdfs:label "ChIP-chip assay"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "tiling microarray"@en) -AnnotationAssertion( ) + +# Class: (tiling microarray) + AnnotationAssertion( "tiling microarray"@en) -AnnotationAssertion( "EFO_0002704: tiling array"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "a DNA microarray which has short fragments of nucleic acid immobilized on a substrate. These are designed to cover the whole genome of the target species. Tiling arrays are used to determine genome binding in ChIP assays or to identify transcribed regions."^^xsd:string) +AnnotationAssertion( "Person: Helen Parkinson"^^xsd:string) AnnotationAssertion( "genome tiling array"^^xsd:string) +AnnotationAssertion( "EFO_0002704: tiling array"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Person: Helen Parkinson"^^xsd:string) +AnnotationAssertion(rdfs:label "tiling microarray"@en) SubClassOf( ) + +# Class: (DNA sequence data) + +AnnotationAssertion( "DNA sequence data"^^xsd:string) AnnotationAssertion( "The part of a FASTA file that contains the letters ACTGGGAA "^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "A sequence data item that is about the primary structure of DNA"^^xsd:string) AnnotationAssertion( "OBI call; Bjoern Peters"^^xsd:string) -AnnotationAssertion(rdfs:label "DNA sequence data"^^xsd:string) AnnotationAssertion( "OBI call; Melanie Courtout"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "A sequence data item that is about the primary structure of DNA"^^xsd:string) AnnotationAssertion( "8/29/11 call: This is added after a request from Melanie and Yu. They should review it further. This should be a child of 'sequence data', and as of the current definition will infer there. "^^xsd:string) -AnnotationAssertion( "DNA sequence data"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA sequence data"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (organism) + +AnnotationAssertion( "organism"@en) +AnnotationAssertion( "animal"@en) +AnnotationAssertion( "fungus"@en) AnnotationAssertion( "plant"@en) AnnotationAssertion( "virus"@en) -AnnotationAssertion( "fungus"@en) -AnnotationAssertion(rdfs:label "organism"@en) -AnnotationAssertion( "organism"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en) AnnotationAssertion( "10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')"^^xsd:string) AnnotationAssertion( "GROUP: OBI Biomaterial Branch"^^xsd:string) -AnnotationAssertion( "animal"@en) -AnnotationAssertion( "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs."@en) AnnotationAssertion( "WEB: http://en.wikipedia.org/wiki/Organism"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "organism"@en) SubClassOf( ) -AnnotationAssertion( "Richard Scheuermann"@en) -AnnotationAssertion( "Helen Parkinson"@en) -AnnotationAssertion( ) + +# Class: (data transformation) + AnnotationAssertion( "data transformation"@en) -AnnotationAssertion(rdfs:label "data transformation"@en) +AnnotationAssertion( "The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value."^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A data transformation is a process which produces output data from input data"@en) +AnnotationAssertion( "Elisabetta Manduchi"@en) +AnnotationAssertion( "Helen Parkinson"@en) +AnnotationAssertion( "James Malone"@en) +AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "Richard Scheuermann"@en) +AnnotationAssertion( "Ryan Brinkman"@en) +AnnotationAssertion( "Tina Hernandez-Boussard"@en) +AnnotationAssertion( "data analysis"@en) AnnotationAssertion( "data processing"@en) AnnotationAssertion( "Branch editors"@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "data analysis"@en) -AnnotationAssertion( "Tina Hernandez-Boussard"@en) -AnnotationAssertion( "Ryan Brinkman"@en) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "A data transformation is a process which produces output data from input data"@en) -AnnotationAssertion( "The application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value."^^xsd:string) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "data transformation"@en) SubClassOf( ) + +# Class: (differential expression analysis objective) + AnnotationAssertion( "differential expression analysis objective"@en) +AnnotationAssertion( "Analyses implemented by the SAM (http://www-stat.stanford.edu/~tibs/SAM), PaGE (www.cbil.upenn.edu/PaGE) or GSEA (www.broad.mit.edu/gsea/) algorithms and software"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A differential expression analysis objective is a data transformation objective whose input consists of expression levels of entities (such as transcripts or proteins), or of sets of such expression levels, under two or more conditions and whose output reflects which of these are likely to have different expression across such conditions."@en) +AnnotationAssertion( "Elisabetta Manduchi"@en) AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "differential expression analysis objective"@en) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "Analyses implemented by the SAM (http://www-stat.stanford.edu/~tibs/SAM), PaGE (www.cbil.upenn.edu/PaGE) or GSEA (www.broad.mit.edu/gsea/) algorithms and software"@en) -AnnotationAssertion( "A differential expression analysis objective is a data transformation objective whose input consists of expression levels of entities (such as transcripts or proteins), or of sets of such expression levels, under two or more conditions and whose output reflects which of these are likely to have different expression across such conditions."@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "Elisabetta Manduchi"@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) + +# Class: (descriptive statistical calculation objective) + AnnotationAssertion( "descriptive statistical calculation objective"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A descriptive statistical calculation objective is a data transformation objective which concerns any calculation intended to describe a feature of a data set, for example, its center or its variability."@en) +AnnotationAssertion( "Elisabetta Manduchi"@en) +AnnotationAssertion( "James Malone"@en) +AnnotationAssertion( "Melanie Courtot"@en) +AnnotationAssertion( "Monnie McGee"@en) +AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) AnnotationAssertion( "PERSON: James Malone"@en) +AnnotationAssertion( "PERSON: Melanie Courtot"@en) AnnotationAssertion( "PERSON: Monnie McGee"@en) -AnnotationAssertion(rdfs:label "descriptive statistical calculation objective"@en) -AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "Monnie McGee"@en) -AnnotationAssertion( ) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "A descriptive statistical calculation objective is a data transformation objective which concerns any calculation intended to describe a feature of a data set, for example, its center or its variability."@en) +AnnotationAssertion(rdfs:label "descriptive statistical calculation objective"@en) SubClassOf( ) -AnnotationAssertion( "James Malone"^^xsd:string) + +# Class: (sequence analysis objective) + +AnnotationAssertion( "sequence analysis objective"@en) +AnnotationAssertion( ) AnnotationAssertion( "A sequence analysis objective is a data transformation objective which aims to analyse some ordered biological data for sequential patterns."@en) +AnnotationAssertion( "James Malone"^^xsd:string) AnnotationAssertion( "PERSON: James Malone"^^xsd:string) -AnnotationAssertion(rdfs:label "sequence analysis objective"@en) AnnotationAssertion( ) -AnnotationAssertion( "sequence analysis objective"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sequence analysis objective"@en) SubClassOf( ) -AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) -AnnotationAssertion( "Generation of a heatmap from a microarray dataset"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "data visualization"@en) + +# Class: (data visualization) + AnnotationAssertion( "data visualization"^^xsd:string) -AnnotationAssertion( "data encoding as image"^^xsd:string) -AnnotationAssertion( "PERSON: Tina Boussard"@en) +AnnotationAssertion( "Generation of a heatmap from a microarray dataset"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "visualization"@en) -AnnotationAssertion( "PERSON: James Malone"@en) AnnotationAssertion( "An planned process that creates images, diagrams or animations from the input data."@en) -AnnotationAssertion( "PERSON: Melanie Courtot"@en) AnnotationAssertion( "Elisabetta Manduchi"@en) +AnnotationAssertion( "James Malone"@en) AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "Tina Boussard"@en) +AnnotationAssertion( "data encoding as image"^^xsd:string) +AnnotationAssertion( "visualization"@en) +AnnotationAssertion( "PERSON: Elisabetta Manduchi"@en) +AnnotationAssertion( "PERSON: James Malone"@en) +AnnotationAssertion( "PERSON: Melanie Courtot"@en) +AnnotationAssertion( "PERSON: Tina Boussard"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "data visualization"@en) SubClassOf( ) + +# Class: (data transformation objective) + +AnnotationAssertion( "data transformation objective"@en) AnnotationAssertion( "normalize objective"@en) AnnotationAssertion( ) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "data transformation objective"@en) -AnnotationAssertion(rdfs:label "data transformation objective"@en) AnnotationAssertion( "A data transformation objective is an objective specification that a data transformation may have towards which the realization of that transformation is directed."@en) -AnnotationAssertion( ) +AnnotationAssertion( "James Malone"@en) AnnotationAssertion( "PERSON: James Malone"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "data transformation objective"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "data normalization objective"@en) + +# Class: (data normalization objective) + +AnnotationAssertion( "data normalization objective"@en) +AnnotationAssertion( "Quantile transformation which has normalization objective can be used for expression microarray assay normalization and it is referred to as \"quantile normalization\", according to the procedure described e.g. in PMID 12538238."@en) +AnnotationAssertion( ) AnnotationAssertion( "Elisabetta Manduchi"^^xsd:string) +AnnotationAssertion( "Helen Parkinson"^^xsd:string) AnnotationAssertion( "James Malone"@en) AnnotationAssertion( "PERSON: Elisabetta Manduchi"^^xsd:string) -AnnotationAssertion( "Helen Parkinson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "data normalization objective"@en) AnnotationAssertion( "PERSON: Helen Parkinson"^^xsd:string) -AnnotationAssertion( "Quantile transformation which has normalization objective can be used for expression microarray assay normalization and it is referred to as \"quantile normalization\", according to the procedure described e.g. in PMID 12538238."@en) AnnotationAssertion( "PERSON: James Malone"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "data normalization objective"@en) SubClassOf( ) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion(rdfs:label "correction objective"@en) -AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Type I error correction"@en) -AnnotationAssertion( "PERSON: James Malone"^^xsd:string) + +# Class: (correction objective) + AnnotationAssertion( "correction objective"@en) +AnnotationAssertion( "Type I error correction"@en) +AnnotationAssertion( ) AnnotationAssertion( "A correction objective is a data transformation objective where the aim is to correct for error, noise or other impairments to the input of the data transformation or derived from the data transformation itself"@en) +AnnotationAssertion( "James Malone"@en) +AnnotationAssertion( "PERSON: James Malone"^^xsd:string) AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "correction objective"@en) SubClassOf( ) + +# Class: (background correction objective) + AnnotationAssertion( "background correction objective"@en) -AnnotationAssertion( "James Malone"@en) -AnnotationAssertion( "A background correction objective is a data transformation objective where the aim is to remove irrelevant contributions from the measured signal, e.g. those due to instrument noise or sample preparation."@en) AnnotationAssertion( ) +AnnotationAssertion( "A background correction objective is a data transformation objective where the aim is to remove irrelevant contributions from the measured signal, e.g. those due to instrument noise or sample preparation."@en) +AnnotationAssertion( "Elisabetta Manduchi"^^xsd:string) +AnnotationAssertion( "James Malone"@en) AnnotationAssertion( "PERSON: Elisabetta Manduchi"^^xsd:string) -AnnotationAssertion(rdfs:label "background correction objective"@en) AnnotationAssertion( ) -AnnotationAssertion( "Elisabetta Manduchi"^^xsd:string) +AnnotationAssertion(rdfs:label "background correction objective"@en) SubClassOf( ) + +# Class: (curve fitting objective) + AnnotationAssertion( "curve fitting objective"@en) +AnnotationAssertion( ) AnnotationAssertion( "A curve fitting objective is a data transformation objective in which the aim is to find a curve which matches a series of data points and possibly other constraints."@en) +AnnotationAssertion( "Elisabetta Manduchi"^^xsd:string) AnnotationAssertion( "James Malone"@en) AnnotationAssertion( "PERSON: Elisabetta Manduchi"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "curve fitting objective"@en) -AnnotationAssertion( "Elisabetta Manduchi"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "curve fitting objective"@en) SubClassOf( ) -AnnotationAssertion( "PERSON: James Malone"^^xsd:string) -AnnotationAssertion( "James Malone, Helen Parkinson"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "error correction objective"@en) + +# Class: (error correction objective) + AnnotationAssertion( "error correction objective"@en) AnnotationAssertion( "Application of a multiple testing correction method"^^xsd:string) -AnnotationAssertion( "An error correction objective is a data transformation objective where the aim is to remove (correct for) erroneous contributions arising from the input data, or the transformation itself."@en) AnnotationAssertion( ) +AnnotationAssertion( "An error correction objective is a data transformation objective where the aim is to remove (correct for) erroneous contributions arising from the input data, or the transformation itself."@en) +AnnotationAssertion( "James Malone, Helen Parkinson"@en) +AnnotationAssertion( "PERSON: James Malone"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "error correction objective"@en) SubClassOf( ) -AnnotationAssertion( "PMID:7686265 .Mutat Res. 1993 Jul;288(1):47-63.The single cell gel electrophoresis assay (comet assay): a European review."@en) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"@en) + +# Class: (comet assay) + +AnnotationAssertion( "comet assay"@en) AnnotationAssertion( "PMID: 18326531.Mutagenesis. 2008 Mar 6.Recommendations for design of the rat comet assay."@en) -AnnotationAssertion( "SCGE assay"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "comet assay"@en) -AnnotationAssertion( "comet assay"@en) AnnotationAssertion( "a comet assay is an assay which utilizes gel electrophoresis on cell exposed to a challenge with the objective to assess DNA damage (DNA breakage) by determining the size and shape of DNA migration in cell placed in an electric field in specific conditions."@en) +AnnotationAssertion( "Philippe Rocca-Serra"@en) +AnnotationAssertion( "SCGE assay"@en) AnnotationAssertion( "single cell gel electrophoresis assay"@en) +AnnotationAssertion( "PMID:7686265 .Mutat Res. 1993 Jul;288(1):47-63.The single cell gel electrophoresis assay (comet assay): a European review."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "comet assay"@en) SubClassOf( ) -AnnotationAssertion( "PERSON: Philippe Rocca-Serra"@en) -AnnotationAssertion( ) + +# Class: (PCR-SSCP assay) + AnnotationAssertion( "PCR-SSCP assay"^^xsd:string) -AnnotationAssertion( "polymerase chain reaction-single strand conformation polymorphism assay"@en) -AnnotationAssertion( "a PCR-SSCP assay is an assay that identifies DNA sequence variation (mutation, deletion, insertions) using gel electrophoresis technique and denaturating conditions on target DNA sequences amplified using polymerase chain reaction procedure."@en) AnnotationAssertion( "PMID: 17334176.Hum Exp Toxicol. 2007 Jan;26(1):9-18.Is there a role for PCR-SSCP among the methods for missense mutation detection of TP53 gene?"@en) +AnnotationAssertion( ) +AnnotationAssertion( "a PCR-SSCP assay is an assay that identifies DNA sequence variation (mutation, deletion, insertions) using gel electrophoresis technique and denaturating conditions on target DNA sequences amplified using polymerase chain reaction procedure."@en) +AnnotationAssertion( "PERSON: Philippe Rocca-Serra"@en) +AnnotationAssertion( "polymerase chain reaction-single strand conformation polymorphism assay"@en) AnnotationAssertion( "PMID: 18219595.Mol Biotechnol. 2008 Feb;38(2):155-63.PCR-SSCP: a method for the molecular analysis of genetic diseases."@en) -AnnotationAssertion(rdfs:label "PCR-SSCP assay"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "PCR-SSCP assay"@en) SubClassOf( ) + +# Class: (extraction) + AnnotationAssertion( "extraction"^^xsd:string) +AnnotationAssertion( "nucleic acid extraction using phenol chloroform"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A material separation in which a desired component of an input material is separated from the remainder"^^xsd:string) AnnotationAssertion( "Person:Bjoern Peters"^^xsd:string) -AnnotationAssertion(rdfs:label "extraction"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "A material separation in which a desired component of an input material is separated from the remainder"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "nucleic acid extraction using phenol chloroform"^^xsd:string) +AnnotationAssertion(rdfs:label "extraction"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "filtration"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "filtration is a process which separates components suspended in a fluid based on granularity properties relying on a filter device"@en) + +# Class: (filtration) + AnnotationAssertion( "filtration"^^xsd:string) AnnotationAssertion( "PMID: 18524968.Filtration of CSF improves isolation of Mycobacteria.J Clin Microbiol. 2008 Jun 4."@en) -AnnotationAssertion( "OBI-Branch: adapted from wikipedia and wordnet"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion( "filtration is a process which separates components suspended in a fluid based on granularity properties relying on a filter device"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI-Branch: adapted from wikipedia and wordnet"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "filtration"@en) SubClassOf( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "centrifugation"@en) + +# Class: (centrifugation) + AnnotationAssertion( "centrifugation"^^xsd:string) AnnotationAssertion( "PMID: 18428461.Purification of oligodendrocytes and their progenitors using immunomagnetic separation and Percoll gradient centrifugation. Curr Protoc Neurosci. 2001 May;Chapter 3:Unit 3.12."@en) -AnnotationAssertion( "adapted from http://www.fao.org/DOCREP/003/X3910E/X3910E06.htm"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "centrifugation is a process separating molecules by size or density using centrifugal forces generated by a spinning rotor. G-forces of several hundred thousand times gravity are generated in ultracentrifugation"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "adapted from http://www.fao.org/DOCREP/003/X3910E/X3910E06.htm"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "centrifugation"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "staining"@en) + +# Class: (staining) + +AnnotationAssertion( "staining"^^xsd:string) +AnnotationAssertion( "PMID: 18540298. Role of modified bleach method in staining of acid-fast bacilli in lymph node aspirates. Acta Cytol. 2008 May-Jun;52(3):325-8."@en) AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "Staining is a process which results in the addition a class-specific (DNA, proteins, lipids, carbohydrates) dye to a substrate to qualify or quantify the presence of a specific compound."@en) -AnnotationAssertion( ) -AnnotationAssertion( "PMID: 18540298. Role of modified bleach method in staining of acid-fast bacilli in lymph node aspirates. Acta Cytol. 2008 May-Jun;52(3):325-8."@en) -AnnotationAssertion( "staining"^^xsd:string) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "adapted from Wikipedia: http://en.wikipedia.org/wiki/Staining"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "staining"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (irradiation) + AnnotationAssertion( "irradiation"^^xsd:string) -AnnotationAssertion(rdfs:label "irradiation"@en) -AnnotationAssertion( ) AnnotationAssertion( "PMID: 18563778.Histological and modeling study of skin thermal injury to 2.0 mum laser irradiation.Lasers Surg Med. 2008 Jun 18;40(5):358-370."@en) -AnnotationAssertion( "adapted from wikipedia (http://en.wikipedia.org/wiki/Irradiation)"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "irradiation is a process by which a material entity is exposed to radiative energy, which could be ionizing radiation (such as gamma rays or X-rays) or not such as UV light or microwaves"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "adapted from wikipedia (http://en.wikipedia.org/wiki/Irradiation)"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "irradiation"@en) SubClassOf( ) -AnnotationAssertion( "OBI-Branch"^^xsd:string) -AnnotationAssertion( ) + +# Class: (polymerization) + +AnnotationAssertion( "polymerization"^^xsd:string) AnnotationAssertion( "PMID: 18517209. The electronic role of DNA-functionalized carbon nanotubes: efficacy for in situ polymerization of conducting polymer nanocomposites. J Am Chem Soc. 2008 Jun 25;130(25):7921-8. Epub 2008 Jun 3."@en) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion( "polymerization is process by which molecular entity of small mass are aggregated in motifs over the course of a chemical reaction catalyzed by enzymes or other molecular entities acting as catalyst. polymerization results in molecular entity of high molecular weight"@en) -AnnotationAssertion(rdfs:label "polymerization"@en) -AnnotationAssertion( "polymerization"^^xsd:string) AnnotationAssertion( "PRS:22102008: need to import catalyst from CHEBI 35223"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI-Branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "polymerization"@en) SubClassOf( ) -AnnotationAssertion( "The use of mild trypsinization conditions in the detachment of endothelial cells to promote subsequent endothelialization on synthetic surfaces. Biomaterials. 2007 Sep;28(27):3928-35. PMID: 17570483"@en) + +# Class: (trypsination) + AnnotationAssertion( "trypsination"^^xsd:string) +AnnotationAssertion( "The use of mild trypsinization conditions in the detachment of endothelial cells to promote subsequent endothelialization on synthetic surfaces. Biomaterials. 2007 Sep;28(27):3928-35. PMID: 17570483"@en) AnnotationAssertion( ) +AnnotationAssertion( "trypsination is a protease cleavage which uses enzyme trypsin to act on proteins present in an input material entity"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "OBI PA"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "trypsination is a protease cleavage which uses enzyme trypsin to act on proteins present in an input material entity"@en) AnnotationAssertion(rdfs:label "trypsination"@en) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (enzymatic ligation) + +AnnotationAssertion( "enzymatic ligation"^^xsd:string) AnnotationAssertion( "PMID: 17853876. Enzymatic ligation assisted by nucleases: simultaneous ligation and digestion promote the ordered assembly of DNA. Nat Protoc. 2007;2(9):2198-202."@en) -AnnotationAssertion(rdfs:label "enzymatic ligation"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An enzymatic ligation is a planned process in which molecules are joined by covalent bonds through the action of an material entity with a ligase activity"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "OBI-Branch"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "An enzymatic ligation is a planned process in which molecules are joined by covalent bonds through the action of an material entity with a ligase activity"@en) -AnnotationAssertion( "enzymatic ligation"^^xsd:string) +AnnotationAssertion(rdfs:label "enzymatic ligation"@en) SubClassOf( ) -AnnotationAssertion( "PMID: 9587208. Electrocution of horses and cattle. Vet Rec. 1998 Apr 4;142(14):376."@en) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) + +# Class: (electrocution) + AnnotationAssertion( "electrocution"^^xsd:string) -AnnotationAssertion(rdfs:label "electrocution"@en) +AnnotationAssertion( "PMID: 9587208. Electrocution of horses and cattle. Vet Rec. 1998 Apr 4;142(14):376."@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch"^^xsd:string) AnnotationAssertion( "electrocution is process by which electric current is applied to a material with quality alive and result the termination of life process."@en) -SubClassOf( ) -AnnotationAssertion( "PMID: 18246869. Loss of cortical function in mice after decapitation, cervical dislocation, potassium chloride injection, and CO2 inhalation. Comp Med. 2007 Dec;57(6):570-3"@en) -AnnotationAssertion( "PRS:21102008: Input must be restricted to Vertebrates (requires import from NCBI tax)"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electrocution"@en) +SubClassOf( ) + +# Class: (cervical dislocation) + AnnotationAssertion( "cervical dislocation"^^xsd:string) +AnnotationAssertion( "PMID: 18246869. Loss of cortical function in mice after decapitation, cervical dislocation, potassium chloride injection, and CO2 inhalation. Comp Med. 2007 Dec;57(6):570-3"@en) AnnotationAssertion( ) +AnnotationAssertion( "cervical dislocation is a process by which a Vertebrate organism has its life terminated by rupturing spinal cord between cervical vertebrae induced by excessive mechanical torsion"@en) +AnnotationAssertion( "PRS:21102008: Input must be restricted to Vertebrates (requires import from NCBI tax)"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "OBI branch"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion(rdfs:label "cervical dislocation"@en) -AnnotationAssertion( "cervical dislocation is a process by which a Vertebrate organism has its life terminated by rupturing spinal cord between cervical vertebrae induced by excessive mechanical torsion"@en) SubClassOf( ) -AnnotationAssertion( "asphyxiation is a process by which oxygen supplies are restricted (by mechanical, e.g obstructing airways or chemical means, e.g. increasing CO2 partial pressure) resulting in termination of life in oxygen reliant organisms."@en) + +# Class: (asphyxiation) + AnnotationAssertion( "asphyxiation"^^xsd:string) +AnnotationAssertion( "PMID: 18246869. Loss of cortical function in mice after decapitation, cervical dislocation, potassium chloride injection, and CO2 inhalation. Comp Med. 2007 Dec;57(6):570-"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "asphyxiation is a process by which oxygen supplies are restricted (by mechanical, e.g obstructing airways or chemical means, e.g. increasing CO2 partial pressure) resulting in termination of life in oxygen reliant organisms."@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "OBI branch"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "asphyxiation"@en) -AnnotationAssertion( "PMID: 18246869. Loss of cortical function in mice after decapitation, cervical dislocation, potassium chloride injection, and CO2 inhalation. Comp Med. 2007 Dec;57(6):570-"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (intentional overdosing) + +AnnotationAssertion( "intentional overdosing"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "lethal injection"@en) -AnnotationAssertion(rdfs:label "intentional overdosing"@en) -AnnotationAssertion( "OBI Biomaterial"^^xsd:string) AnnotationAssertion( "intentional overdosing is a process by which an excess dose of a chemical compound is given with the intent of causing death"@en) -AnnotationAssertion( "intentional overdosing"^^xsd:string) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "lethal injection"@en) +AnnotationAssertion( "OBI Biomaterial"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "intentional overdosing"@en) SubClassOf( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "OBI-Branch"^^xsd:string) + +# Class: (decapitation) + AnnotationAssertion( "decapitation"^^xsd:string) AnnotationAssertion( "PMID: 18246869. Loss of cortical function in mice after decapitation, cervical dislocation, potassium chloride injection, and CO2 inhalation. Comp Med. 2007 Dec;57(6):570-"@en) -AnnotationAssertion(rdfs:label "decapitation"@en) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "decapitation is a process by which the head of a living organism is physically removed from the body, usually resulting in rapid death (in the case of Rhodnius prolixus, it might take a bit longer..)"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI-Branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "decapitation"@en) SubClassOf( ) -AnnotationAssertion( "OBI-Branch"^^xsd:string) + +# Class: (immobilization) + AnnotationAssertion( "immobilization"^^xsd:string) AnnotationAssertion( "PMID: 18562258. The immobilization of proteins on biodegradable fibers via biotin-streptavidin bridges.Acta Biomater. 2008 May 23."@en) -AnnotationAssertion(rdfs:label "immobilization"@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "immbolization is a process by which material entity become (possibly covalently but not necessarily) attached to the surface of another material entity used a substratum."@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "OBI-Branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "immobilization"@en) SubClassOf( ) + +# Class: (elution) + +AnnotationAssertion( "elution"^^xsd:string) AnnotationAssertion( "PMID: 18549238.Theory and Application of the Two-Mode Gradient Elution in Liquid Chromatography Involving Simultaneous Changes in Temperature and Mobile-Phase Composition.Anal Chem. 2008 Jun 13."@en) +AnnotationAssertion( ) AnnotationAssertion( "the process of extracting one material from another by washing with a solvent to remove adsorbed material from an adsorbent (as in washing of loaded ion-exchange resins to remove captured ions)"@en) -AnnotationAssertion( ) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "wordnet.princeton.edu/perl/webwn"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "elution"@en) -AnnotationAssertion( "elution"^^xsd:string) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) SubClassOf( ) -AnnotationAssertion( "OBI-Branch"^^xsd:string) + +# Class: (DNA Subtraction) + +AnnotationAssertion( "DNA Subtraction"@en) +AnnotationAssertion( "PMID: 10718422. Identification of genes overexpressed in head and neck squamous cell carcinoma using a combination of complementary DNA subtraction and microarray analysis. Laryngoscope. 2000 Mar;110(3 Pt 1):374-81"@en) AnnotationAssertion( ) +AnnotationAssertion( "a material separation process by which repetitive genomic DNA is removed during the construction of cDNA library."@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "DNA Subtraction"@en) -AnnotationAssertion( "DNA Subtraction"@en) +AnnotationAssertion( "OBI-Branch"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "a material separation process by which repetitive genomic DNA is removed during the construction of cDNA library."@en) -AnnotationAssertion( "PMID: 10718422. Identification of genes overexpressed in head and neck squamous cell carcinoma using a combination of complementary DNA subtraction and microarray analysis. Laryngoscope. 2000 Mar;110(3 Pt 1):374-81"@en) +AnnotationAssertion(rdfs:label "DNA Subtraction"@en) SubClassOf( ) -AnnotationAssertion( "adapted from wordnet (wkipedia)"^^xsd:string) -AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "validation"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PMID: 18557814 . Chemical and genetic validation of dihydrofolate reductase-thymidylate synthase as a drug target in African trypanosomes. Mol Microbiol. 2008 Jun 16."@en) + +# Class: (validation) + AnnotationAssertion( "validation"^^xsd:string) -AnnotationAssertion( "a planned process with objective to check that the accuracy or the quality of a claim or prediction satisfies some criteria and which is assessed by comparing with independent results"@en) +AnnotationAssertion( "PMID: 18557814 . Chemical and genetic validation of dihydrofolate reductase-thymidylate synthase as a drug target in African trypanosomes. Mol Microbiol. 2008 Jun 16."@en) AnnotationAssertion( ) +AnnotationAssertion( "a planned process with objective to check that the accuracy or the quality of a claim or prediction satisfies some criteria and which is assessed by comparing with independent results"@en) +AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "adapted from wordnet (wkipedia)"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "validation"@en) SubClassOf( ) + +# Class: (electroporation) + AnnotationAssertion( "electroporation"^^xsd:string) AnnotationAssertion( "PMID: 18551712. Microfluidic electroporation for selective release of intracellular molecules at the single-cell level. Electrophoresis. 2008 Jun 13."@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "electroporation"@en) -AnnotationAssertion( "electropermeabilization"^^xsd:string) +AnnotationAssertion( "a process in which a significant increase in the electrical conductivity and permeability of the cell plasma membrane caused by an externally applied electrical field. It is usually used in molecular biology as a way of introducing some substance into a cell, such as loading it with a molecular probe, a drug that can change the cell's function, or a piece of coding DNA"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "electropermeabilization"^^xsd:string) AnnotationAssertion( "WEB:http://en.wikipedia.org/wiki/Electroporation"^^xsd:string) -AnnotationAssertion( "a process in which a significant increase in the electrical conductivity and permeability of the cell plasma membrane caused by an externally applied electrical field. It is usually used in molecular biology as a way of introducing some substance into a cell, such as loading it with a molecular probe, a drug that can change the cell's function, or a piece of coding DNA"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electroporation"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "analog-to-digital converter"@en) -AnnotationAssertion( "An analog-to-digital_converter is an instrument that converts an infinite resolution analog signal to a finite resolution digital signal."@en) -AnnotationAssertion( "Melanie Courtot"@en) + +# Class: (analog-to-digital converter) + AnnotationAssertion( "analog-to-digital converter"@en) AnnotationAssertion( "The analog to digital converter transformed the analog output from the photomultiplier tube to a digital signal for collection."@en) +AnnotationAssertion( ) +AnnotationAssertion( "An analog-to-digital_converter is an instrument that converts an infinite resolution analog signal to a finite resolution digital signal."@en) AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A2D"@en) +AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "A-D"@en) +AnnotationAssertion( "A2D"@en) AnnotationAssertion( "http://en.wiktionary.org/wiki/Analog-to-Digital_Converter"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "analog-to-digital converter"@en) SubClassOf( ) + +# Class: (flow cytometer analyzer) + AnnotationAssertion( "flow cytometer analyzer"@en) AnnotationAssertion( "FACS Calibur, Luminex 100"@en) -AnnotationAssertion(rdfs:label "flow cytometer analyzer"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) AnnotationAssertion( "An analyser is a flow_cytometer that is used to measure properties of particles (whole cells, nuclei, chromosomes, diatoms, plankton, bacteria, viruses) by moving these particles through a detection chamber. An analyser is used to collect data for analysis."@en) -AnnotationAssertion( ) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "flow cytometer analyzer"@en) SubClassOf( ) -AnnotationAssertion( "John Quinn"@en) + +# Class: (arc lamp) + +AnnotationAssertion( "arc lamp"@en) +AnnotationAssertion( "The Jablochkoff Candle"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "arc lamp"@en) +AnnotationAssertion( "Arc lamp is a light source that produces light by an electric arc (or voltaic arc). The lamp consists of two electrodes typically made of tungsten which are separated by a gas. The type of lamp is often named by the gas contained in the bulb; including neon, argon, xenon, krypton, sodium, metal halide, and mercury. The electric arc in an arc lamp consists of gas which is initially ionized by a voltage and is therefore electrically conductive. To start an arc lamp, usually a very high voltage is needed to ignite or strike the arc. This requires an electrical circuit sometimes called an igniter, which is part of a larger circuit called the ballast. The ballast supplies a suitable voltage and current to the lamp as its electrical characteristics change with temperature and time. Older cytometers may use arc lamps to irradiate particles at the interrogation point."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Arc_lamp"@en) -AnnotationAssertion( "The Jablochkoff Candle"@en) AnnotationAssertion( ) -AnnotationAssertion( "arc lamp"@en) -AnnotationAssertion( "Arc lamp is a light source that produces light by an electric arc (or voltaic arc). The lamp consists of two electrodes typically made of tungsten which are separated by a gas. The type of lamp is often named by the gas contained in the bulb; including neon, argon, xenon, krypton, sodium, metal halide, and mercury. The electric arc in an arc lamp consists of gas which is initially ionized by a voltage and is therefore electrically conductive. To start an arc lamp, usually a very high voltage is needed to ignite or strike the arc. This requires an electrical circuit sometimes called an igniter, which is part of a larger circuit called the ballast. The ballast supplies a suitable voltage and current to the lamp as its electrical characteristics change with temperature and time. Older cytometers may use arc lamps to irradiate particles at the interrogation point."@en) +AnnotationAssertion(rdfs:label "arc lamp"@en) SubClassOf( ) -AnnotationAssertion( "John Quinn"@en) + +# Class: (argon ion laser) + AnnotationAssertion( "argon ion laser"@en) +AnnotationAssertion( "argon ion laser in a cytometer"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "An argon-ion laser is an ion laser that uses argon ions as the lasing medium. These lasers are used primarily to emit light at wave lengths of 458 nm, 488 nm or 514.5 nm, though it is possible to use them to emit several wavelengths of blue and green light. Argon-ion lasers can emit light at many different wave lenghts, and excite a number of different flourochromes."@en) AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( "argon ion laser in a cytometer"@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Laser#Gas_lasers"^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "argon ion laser"@en) -AnnotationAssertion( "An argon-ion laser is an ion laser that uses argon ions as the lasing medium. These lasers are used primarily to emit light at wave lengths of 458 nm, 488 nm or 514.5 nm, though it is possible to use them to emit several wavelengths of blue and green light. Argon-ion lasers can emit light at many different wave lenghts, and excite a number of different flourochromes."@en) SubClassOf( ) + +# Class: (avalanche photodiode) + AnnotationAssertion( "avalanche photodiode"@en) -AnnotationAssertion( ) -AnnotationAssertion( "An avalanche photodiode is typically used to collect photons emitted by forward scatter because it is far less sensitive, and less likely o be burned out, than a PMT. A photodiode with high quantum efficiency and a mechanism for producing gains as high as a few thousand."@en) +AnnotationAssertion( "C30644E - InGaAs Avalanche Photodiode"@en) AnnotationAssertion( ) +AnnotationAssertion( "An avalanche photodiode is typically used to collect photons emitted by forward scatter because it is far less sensitive, and less likely o be burned out, than a PMT. A photodiode with high quantum efficiency and a mechanism for producing gains as high as a few thousand."@en) AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion(rdfs:label "avalanche photodiode"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) -AnnotationAssertion( "C30644E - InGaAs Avalanche Photodiode"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "avalanche photodiode"@en) SubClassOf( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Band_pass_filter"@en) -AnnotationAssertion( "530/30 BP filter, 585/42 BP filter"@en) + +# Class: (band pass filter) + AnnotationAssertion( "band pass filter"@en) -AnnotationAssertion(rdfs:label "band pass filter"@en) -AnnotationAssertion( ) +AnnotationAssertion( "530/30 BP filter, 585/42 BP filter"@en) +AnnotationAssertion( ) AnnotationAssertion( "A band pass filter is an optical filter that passes wavelengths of light within a certain range and rejects (attenuates) frequencies outside that range. The passed wavelengths are indicated in the specifications of the filter and its name. A 480/20 band-pass filter pass light with at wavelengths of 460 to 500 nm and attenuates all others."@en) AnnotationAssertion( "Person:John Quinn"@en) -AnnotationAssertion( ) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Band_pass_filter"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "band pass filter"@en) SubClassOf( ) -AnnotationAssertion( "Part of the fluidics subsystem. Charge plates are used or sorters. They create an charged electric field when particles deemed to be desired for further analysis are shaken form the piexo electric crystal. The charged particles are drawn toward the charged plate, and the altered drop location causes the particles to fall into a collection tube. Charge plates enable sorting."@en) + +# Class: (charge plate) + AnnotationAssertion( "charge plate"@en) -AnnotationAssertion(rdfs:label "charge plate"@en) AnnotationAssertion( "LSR2 charge plate"@en) AnnotationAssertion( ) +AnnotationAssertion( "Part of the fluidics subsystem. Charge plates are used or sorters. They create an charged electric field when particles deemed to be desired for further analysis are shaken form the piexo electric crystal. The charged particles are drawn toward the charged plate, and the altered drop location causes the particles to fall into a collection tube. Charge plates enable sorting."@en) AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( ) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "charge plate"@en) SubClassOf( ) + +# Class: (dichroic filter) + AnnotationAssertion( "dichroic filter"@en) AnnotationAssertion( "Cy3 Dichroic Filter"@en) -AnnotationAssertion(rdfs:label "dichroic filter"@en) -AnnotationAssertion( ) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Dichroic_filter"@en) AnnotationAssertion( ) AnnotationAssertion( "A dichroic filter is an optical filter which is used to selectively pass light of a small range of colors while reflecting other colors. A dichroic filter passes the specified range of light whereas a dichroic mirror reflects the specified range of light."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Dichroic_filter"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dichroic filter"@en) SubClassOf( ) + +# Class: (dichroic mirror) + +AnnotationAssertion( "dichroic mirror"@en) AnnotationAssertion( "ViewLux Alexa 594 dichroic mirror"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "dichroic mirror"@en) -AnnotationAssertion( "dichroic mirror"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Dichroic_mirror"@en) AnnotationAssertion( "A dichroic mirror is an optical filter which is used to selectively reflect light of a small range of colors while passing other colors. A dichroic filter passes the specified range of light whereas a dichroic mirror reflects the specified range of light."@en) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Dichroic_mirror"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dichroic mirror"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Part of the fluidics subsystem. The differential pressure gauge monitors the difference between sample and sheath fluid pressures in systems where pressure is used to force the sample fluid to flow in the center of the sheath fluid. A differential pressure gauge can be used by the operator to make sure that the sample fluid is at a greater pressure than the sheath fluid, which maintains a core of sample fluid."@en) + +# Class: (differential pressure gauge) + +AnnotationAssertion( "differential pressure gauge"@en) +AnnotationAssertion( "LSR2 differential pressure gauge"@en) AnnotationAssertion( ) +AnnotationAssertion( "Part of the fluidics subsystem. The differential pressure gauge monitors the difference between sample and sheath fluid pressures in systems where pressure is used to force the sample fluid to flow in the center of the sheath fluid. A differential pressure gauge can be used by the operator to make sure that the sample fluid is at a greater pressure than the sheath fluid, which maintains a core of sample fluid."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) -AnnotationAssertion( "LSR2 differential pressure gauge"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "differential pressure gauge"@en) -AnnotationAssertion( "differential pressure gauge"@en) -AnnotationAssertion( "John Quinn"@en) SubClassOf( ) -AnnotationAssertion( "FAX-RS3-H0 diode laser manufactured by Diode Laser Concepts, Inc."@en) + +# Class: (diode laser) + AnnotationAssertion( "diode laser"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "diode laser"@en) +AnnotationAssertion( "FAX-RS3-H0 diode laser manufactured by Diode Laser Concepts, Inc."@en) AnnotationAssertion( ) +AnnotationAssertion( "A diode laser is a laser in which the active medium is a p-n junction semiconductor laser diode, similar to that found in a light-emitting diode. Laser diodes emit at wavelengths from 375 nm to 1800 nm, and wavelengths of over 3 micrometer have been demonstrated. A diode laser can by used to irradiate cells in a flow cytometer."@en) AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A diode laser is a laser in which the active medium is a p-n junction semiconductor laser diode, similar to that found in a light-emitting diode. Laser diodes emit at wavelengths from 375 nm to 1800 nm, and wavelengths of over 3 micrometer have been demonstrated. A diode laser can by used to irradiate cells in a flow cytometer."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "diode laser"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "dye laser"@en) + +# Class: (dye laser) + AnnotationAssertion( "dye laser"@en) +AnnotationAssertion( "Rhodamine 101 dye laser used to irradiate cells in a flow cytometer."@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "A dye laser is a laser in which the lasing medium is a fluorescent dye, usually dissolved in an organic solvent such as ethanol or ethylene glycol. The particular dye used determines the wavelengths the laser can emit. The laser medium is places between two parallel mirrors for light emission amplification."@en) +AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) -AnnotationAssertion( "Rhodamine 101 dye laser used to irradiate cells in a flow cytometer."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dye laser"@en) SubClassOf( ) -AnnotationAssertion( "Aparatus in the fluidic subsystem where the sheath and sample meet. Can be one of several types; jet-in-air, quartz cuvette, or a hybrid of the two. The sample flows through the center of a fluid column of sheath fluid in the flow cell."@en) -AnnotationAssertion(rdfs:label "flow cell"@en) + +# Class: (flow cell) + AnnotationAssertion( "flow cell"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion( "flow_cell"^^xsd:string) AnnotationAssertion( "Biofilm Flow Cell"@en) +AnnotationAssertion( ) +AnnotationAssertion( "Aparatus in the fluidic subsystem where the sheath and sample meet. Can be one of several types; jet-in-air, quartz cuvette, or a hybrid of the two. The sample flows through the center of a fluid column of sheath fluid in the flow cell."@en) AnnotationAssertion( "Person:John Quinn"@en) +AnnotationAssertion( "flow_cell"^^xsd:string) AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "flow cell"@en) SubClassOf( ) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A flow_cytometer is an instrument for counting, examining and sorting microscopic particles in suspension. It allows simultaneous multiparametric analysis of the physical and/or chemical characteristics of single cells flowing through an optical and/or electronic detection apparatus. A flow cytometer is an instrument that can be used to quantitatively measure the properties of individual cells in a flowing medium."@en) -AnnotationAssertion( ) + +# Class: (flow cytometer) + AnnotationAssertion( "flow cytometer"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "flow cytometer"@en) AnnotationAssertion( "FACS Calibur"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A flow_cytometer is an instrument for counting, examining and sorting microscopic particles in suspension. It allows simultaneous multiparametric analysis of the physical and/or chemical characteristics of single cells flowing through an optical and/or electronic detection apparatus. A flow cytometer is an instrument that can be used to quantitatively measure the properties of individual cells in a flowing medium."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Flow_cytometer"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "flow cytometer"@en) SubClassOf( ) -AnnotationAssertion( "Part of the fluidic subsystem. The fluid pressure regulator maintains constant pressure within the sheath and or sample lines by filling the lines with enough gas to push the fluid at the desired rate. The gas is usually air, and less frequently nitrogen. In the sheath line, the gas is pushed into the sheath tank. In the sample line the gas is pushed into the collection tube. Fluid pressure regulators maintain great enough pressure to push sample fluid out of the tube and sheath fluid out of the sheath tank."@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "fluid pressure regulator"@en) -AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) + +# Class: (fluid pressure regulator) + AnnotationAssertion( "fluid pressure regulator"@en) -AnnotationAssertion( "Person: John Quinn"@en) AnnotationAssertion( "LSR2 fluid pressure regulator"@en) AnnotationAssertion( ) -SubClassOf( ) -AnnotationAssertion( "A gas laser is a laser in which the lasing medium is a gas. The laser medium is places between two parallel mirrors for light emission amplification. The gas is excited to emit light via an external light source or an electric current discharging through the gas."@en) -AnnotationAssertion(rdfs:label "gas laser"@en) -AnnotationAssertion( "helium-neon gas laser used to erradiate cells in a flow cytometer."@en) -AnnotationAssertion( ) +AnnotationAssertion( "Part of the fluidic subsystem. The fluid pressure regulator maintains constant pressure within the sheath and or sample lines by filling the lines with enough gas to push the fluid at the desired rate. The gas is usually air, and less frequently nitrogen. In the sheath line, the gas is pushed into the sheath tank. In the sample line the gas is pushed into the collection tube. Fluid pressure regulators maintain great enough pressure to push sample fluid out of the tube and sheath fluid out of the sheath tank."@en) +AnnotationAssertion( "Person: John Quinn"@en) +AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluid pressure regulator"@en) +SubClassOf( ) + +# Class: (gas laser) + +AnnotationAssertion( "gas laser"^^xsd:string) +AnnotationAssertion( "helium-neon gas laser used to erradiate cells in a flow cytometer."@en) AnnotationAssertion( ) +AnnotationAssertion( "A gas laser is a laser in which the lasing medium is a gas. The laser medium is places between two parallel mirrors for light emission amplification. The gas is excited to emit light via an external light source or an electric current discharging through the gas."@en) AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Gas_laser"^^xsd:string) -AnnotationAssertion( "gas laser"^^xsd:string) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Gas_laser"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gas laser"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "helium cadmium ion laser"@en) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Laser#Gas_lasers"@en) + +# Class: (helium cadmium ion laser) + AnnotationAssertion( "helium cadmium ion laser"@en) +AnnotationAssertion( "KIMMON HeCd 325nm laser"@en) +AnnotationAssertion( ) AnnotationAssertion( "A helium-cadmium laser is a metal vapor laser that emits wavelengths of 442, 325 and 354 nms. This laser is a metal vapor laser. A helium-cadmium laser can by used to irradiate cells in a flow cytometer."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Laser#Gas_lasers"@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "KIMMON HeCd 325nm laser"@en) +AnnotationAssertion(rdfs:label "helium cadmium ion laser"@en) SubClassOf( ) + +# Class: (helium neon ion laser) + +AnnotationAssertion( "helium neon ion laser"@en) +AnnotationAssertion( "A helium neon laser can by used to irradiate cells in a flow cytometer."@en) AnnotationAssertion( ) +AnnotationAssertion( "A helium-neon laser (HeNe) is an ion laser that uses helium and neon gas-ions as lasing medium. HeNe lasers emit at 543 nm and 633 nm most commonly and can also be used at 543, 594, and 611 nm."@en) AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion(rdfs:label "helium neon ion laser"@en) -AnnotationAssertion( "A helium-neon laser (HeNe) is an ion laser that uses helium and neon gas-ions as lasing medium. HeNe lasers emit at 543 nm and 633 nm most commonly and can also be used at 543, 594, and 611 nm."@en) -AnnotationAssertion( "helium neon ion laser"@en) -AnnotationAssertion( ) AnnotationAssertion( "http://en.wikipedia.org/wiki/Laser#Gas_lasers"^^xsd:string) -AnnotationAssertion( "A helium neon laser can by used to irradiate cells in a flow cytometer."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "helium neon ion laser"@en) SubClassOf( ) -AnnotationAssertion( "An ion laser is a gas laser which uses an ionized gas as its lasing medium."@en) -AnnotationAssertion(rdfs:label "ion laser"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Ion_laser"^^xsd:string) + +# Class: (ion laser) + AnnotationAssertion( "ion laser"@en) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( "2 Watt Lexel 88 Argon Ion laser"@en) AnnotationAssertion( ) +AnnotationAssertion( "An ion laser is a gas laser which uses an ionized gas as its lasing medium."@en) +AnnotationAssertion( "Daniel Schober"@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Ion_laser"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ion laser"@en) SubClassOf( ) + +# Class: (krypton ion laser) + AnnotationAssertion( "krypton ion laser"@en) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( ) AnnotationAssertion( "Lexel 95L krypton laser"@en) -AnnotationAssertion(rdfs:label "krypton ion laser"@en) +AnnotationAssertion( ) AnnotationAssertion( "A krypton-ion laser is an ion laser that uses krypton as the lasing medium. These lasers can emit at 468, 476, 482, 520, 531, 568, 647 (the most powerful line), and 676 nm all at once. They have much lower gain than argon lasers however."@en) +AnnotationAssertion( "Daniel Schober"@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "krypton ion laser"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (laser) + AnnotationAssertion( "laser"@en) +AnnotationAssertion( "A laser is the most common way to irradiate a cell in a flow cytometer."@en) AnnotationAssertion( ) +AnnotationAssertion( "A laser (acronym for light amplification by the stimulated emission of radiation) is a light source that emits photons of the same characteristics in a coherent beam. A laser uses a solid, liquid or gaseous lasing medium, that contains molecules, of which some atoms have electrons that emit photons of the same frequency when falling back to their normal orbital after excitation (pumping) by external means A laser is the most common way to irradiate a cell in a flow cytometer."@en) AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion(rdfs:label "laser"@en) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Laser"^^xsd:string) -AnnotationAssertion( "A laser is the most common way to irradiate a cell in a flow cytometer."@en) -AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "light amplification by the stimulated emission of radiation"@en) -AnnotationAssertion( "A laser (acronym for light amplification by the stimulated emission of radiation) is a light source that emits photons of the same characteristics in a coherent beam. A laser uses a solid, liquid or gaseous lasing medium, that contains molecules, of which some atoms have electrons that emit photons of the same frequency when falling back to their normal orbital after excitation (pumping) by external means A laser is the most common way to irradiate a cell in a flow cytometer."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Laser"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "laser"@en) SubClassOf( ) -AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) + +# Class: (light source) + AnnotationAssertion( "light source"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "A light source is an optical subsystem that provides light for use in a distant area using a delivery system (e.g., fiber optics). Light sources may include one of a variety of lamps (e.g., xenon, halogen, mercury). Most light sources are operated from line power, but some may be powered from batteries. They are mostly used in endoscopic, microscopic, and other examination and/or in surgical procedures. The light source is part of the optical subsystem. In a flow cytometer the light source directs high intensity light at particles at the interrogation point. The light source in a flow cytometer is usually a laser."@en) +AnnotationAssertion( "Elizabeth M. Goralczyk"@en) AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion(rdfs:label "light source"@en) AnnotationAssertion( "Olga Tchuvatkina"@en) -AnnotationAssertion( "Elizabeth M. Goralczyk"@en) -AnnotationAssertion( "A light source is an optical subsystem that provides light for use in a distant area using a delivery system (e.g., fiber optics). Light sources may include one of a variety of lamps (e.g., xenon, halogen, mercury). Most light sources are operated from line power, but some may be powered from batteries. They are mostly used in endoscopic, microscopic, and other examination and/or in surgical procedures. The light source is part of the optical subsystem. In a flow cytometer the light source directs high intensity light at particles at the interrogation point. The light source in a flow cytometer is usually a laser."@en) +AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "light source"@en) SubClassOf( ) + +# Class: (logarithmic voltage amplifier) + +AnnotationAssertion( "logarithmic voltage amplifier"@en) +AnnotationAssertion( "HLVA-100 logarithmic voltage amplifier developed by FEMTO Messtechnik, GmbH"@en) AnnotationAssertion( ) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion(rdfs:label "logarithmic voltage amplifier"@en) -AnnotationAssertion( ) AnnotationAssertion( "A logarithmic voltage amplifier is an analog electronic circuit that puts out a voltage or current proportional to the voltage or current at its input, with logarithmic proportionality. In an analog system, the logarithmic voltage amplifier is used to present parameters with a high dynamic range on a more useful scale."@en) -AnnotationAssertion( "HLVA-100 logarithmic voltage amplifier developed by FEMTO Messtechnik, GmbH"@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) -AnnotationAssertion( "logarithmic voltage amplifier"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "logarithmic voltage amplifier"@en) SubClassOf( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/high-pass_filter"@en) -AnnotationAssertion( "A long pass filter is an optical filter that passes high wavelengths of light but attenuates (or reduces) wavelengths lower than the cutoff frequency. A long pass filter with a cutoff of 500 nm would pass all wavelengths greater than 500 nm."@en) -AnnotationAssertion( ) + +# Class: (long pass filter) + AnnotationAssertion( "long pass filter"@en) -AnnotationAssertion(rdfs:label "long pass filter"@en) AnnotationAssertion( "750 LP filter"@en) -AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( ) +AnnotationAssertion( "A long pass filter is an optical filter that passes high wavelengths of light but attenuates (or reduces) wavelengths lower than the cutoff frequency. A long pass filter with a cutoff of 500 nm would pass all wavelengths greater than 500 nm."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/high-pass_filter"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "long pass filter"@en) SubClassOf( ) -AnnotationAssertion( "Gold vapor laser, Helium-cadmium metal-vapor laser"@en) -AnnotationAssertion(rdfs:label "metal vapor laser"@en) -AnnotationAssertion( ) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A metal vapor laser is a gas laser in which the lasing medium is metal vapor. A metal vapor laser can by used to irradiate cells in a flow cytometer."@en) + +# Class: (metal vapor laser) + AnnotationAssertion( "metal vapor laser"@en) +AnnotationAssertion( "Gold vapor laser, Helium-cadmium metal-vapor laser"@en) AnnotationAssertion( ) +AnnotationAssertion( "A metal vapor laser is a gas laser in which the lasing medium is metal vapor. A metal vapor laser can by used to irradiate cells in a flow cytometer."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "metal vapor laser"@en) SubClassOf( ) + +# Class: (mixed argon-krypton gas laser) + AnnotationAssertion( "mixed argon-krypton gas laser"@en) AnnotationAssertion( "argon-krypton laser in a cytometer"@en) -AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( ) AnnotationAssertion( "A mixed argon krypton gas laser is an ion laser in which the lasing medium is a mixture of argon and krypton. A mixed argon-krypton laser can by used to irradiate cells in a flow cytometer."@en) -AnnotationAssertion(rdfs:label "mixed argon-krypton gas laser"@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "http://www.eio.com/repairfaq/sam/laserarg.htm"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "mixed argon-krypton gas laser"@en) SubClassOf( ) -AnnotationAssertion( "A particle deliver vessel. A multi-well plate is a vessel that can deliver multiple samples to a flow cytometer in a specified order. It must be used with a plate loader."@en) -AnnotationAssertion( "http://www.nuncbrand.com/page.aspx?ID=301"@en) -AnnotationAssertion(rdfs:label "multi-well plate"@en) + +# Class: (multi-well plate) + AnnotationAssertion( "multi-well plate"@en) -AnnotationAssertion( "FG this is synonymous with microtiter plate"@en) +AnnotationAssertion( "96 well plate, 48 multiwell plate"@en) AnnotationAssertion( ) +AnnotationAssertion( "A particle deliver vessel. A multi-well plate is a vessel that can deliver multiple samples to a flow cytometer in a specified order. It must be used with a plate loader."@en) +AnnotationAssertion( "FG this is synonymous with microtiter plate"@en) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://www.nuncbrand.com/page.aspx?ID=301"@en) AnnotationAssertion( ) -AnnotationAssertion( "96 well plate, 48 multiwell plate"@en) +AnnotationAssertion(rdfs:label "multi-well plate"@en) SubClassOf( ) + +# Class: (neodymium-YAG laser) + AnnotationAssertion( "neodymium-YAG laser"@en) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A Neodymium-YAG (yttrium aluminum garnet) laser is a solid state laser in which the lasing medium is a solid rod of crystalline material pumped by a flash lamp or a diode laser. Typical output wavelengths are 355, 532, and 1064 nm. A neodymium-YAG laser can by used to irradiate cells in a flow cytometer."@en) AnnotationAssertion( "Neodymium-YAG Laser in DURIP99 System"@en) -AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion(rdfs:label "neodymium-YAG laser"@en) AnnotationAssertion( ) +AnnotationAssertion( "A Neodymium-YAG (yttrium aluminum garnet) laser is a solid state laser in which the lasing medium is a solid rod of crystalline material pumped by a flash lamp or a diode laser. Typical output wavelengths are 355, 532, and 1064 nm. A neodymium-YAG laser can by used to irradiate cells in a flow cytometer."@en) +AnnotationAssertion( "Daniel Schober"@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "neodymium-YAG laser"@en) SubClassOf( ) -AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( ) + +# Class: (obscuration bar) + +AnnotationAssertion( "obscuration bar"@en) AnnotationAssertion( "obscuration bar in a flow cytometer"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An obscuration bar is a an optical subsystem which is a strip of metal or other material that serves to block out direct light from the illuminating beam. The obscuration bar prevents the bright light scattered in the forward directions from burning out the collection device."@en) +AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "Flow Cytometry: First Principles, by Alice Longobardi Givan, ISBN-10: 0471382248, ISBN-13: 978-0471382249"^^xsd:string) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( ) -AnnotationAssertion( "An obscuration bar is a an optical subsystem which is a strip of metal or other material that serves to block out direct light from the illuminating beam. The obscuration bar prevents the bright light scattered in the forward directions from burning out the collection device."@en) AnnotationAssertion(rdfs:label "obscuration bar"@en) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "obscuration bar"@en) SubClassOf( ) + +# Class: (optical filter) + +AnnotationAssertion( "optical filter"@en) +AnnotationAssertion( "720 LP filter, 580/30 BP filter"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Optical_filter"@en) -AnnotationAssertion(rdfs:label "optical filter"@en) +AnnotationAssertion( "An optical filter is an optical subsystem that selectively transmits light having certain properties (often, a particular range of wavelengths, that is, range of colours of light), while blocking the remainder. They are commonly used in photography, in many optical instruments, and to colour stage lighting Optical filters can be arranged to segregate and collect light by wave length."@en) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Optical_filter"@en) AnnotationAssertion( ) -AnnotationAssertion( "An optical filter is an optical subsystem that selectively transmits light having certain properties (often, a particular range of wavelengths, that is, range of colours of light), while blocking the remainder. They are commonly used in photography, in many optical instruments, and to colour stage lighting Optical filters can be arranged to segregate and collect light by wave length."@en) -AnnotationAssertion( "optical filter"@en) -AnnotationAssertion( "720 LP filter, 580/30 BP filter"@en) +AnnotationAssertion(rdfs:label "optical filter"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (optical subsystem) + +AnnotationAssertion( "optical subsystem"@en) AnnotationAssertion( "optical subsystem of a cytometer"@en) -AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( ) AnnotationAssertion( "a device or part of a device that deals with the behavior and properties of light and the interaction of light with matter. Commonly optical subsystems consist of an excitation optics and collection optics. The excitation optics of a flow cytometer optical subsystem consist of the laser and lenses that are used to shape and focus the laser beam. The collections optics consist of a collection lens to collect light emitted from the particle laser beam interaction and a system of optical mirrors and filters to route specified wavelengths of the collected light to designated optical detectors. The optical subsystem in a flow cytometer consists of the equipment used to irradiate particles, and collect the light either emitted or scattered by those particles."@en) AnnotationAssertion( "DS: Is 'subsystem' necessary or is 'optical_system' enough. Not sure its graph position since an optical subsystem is not necessarily an instrument, but more likely part of one."@en) -AnnotationAssertion( ) -AnnotationAssertion( "optical subsystem"@en) AnnotationAssertion( "Person: Daniel Schober"@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "optical subsystem"@en) SubClassOf( ) -AnnotationAssertion( "Part of the fluidics subsystem. A particle delivery vessel is used to introduce either a single sample or multiple samples to a flow cytometer. The most common particle delivery vessel is a sample tube."@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "particle delivery vessel"@en) + +# Class: (particle delivery vessel) + AnnotationAssertion( "particle delivery vessel"@en) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "FG: this should be delted - particle delivery is a role that an object can play"@en) +AnnotationAssertion( "FC 500 particle delivery vessel"@en) AnnotationAssertion( ) +AnnotationAssertion( "Part of the fluidics subsystem. A particle delivery vessel is used to introduce either a single sample or multiple samples to a flow cytometer. The most common particle delivery vessel is a sample tube."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) -AnnotationAssertion( "FC 500 particle delivery vessel"@en) +AnnotationAssertion( "FG: this should be delted - particle delivery is a role that an object can play"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "particle delivery vessel"@en) SubClassOf( ) -AnnotationAssertion( "A photodetector is a device used to detect and measure the intensity of radiant energy through photoelectric action. In a cytometer, photodetectors measure either the number of photons of laser light scattered on impact with a cell (for example), or the flourescence emitted by excitation of a fluorescent dye."@en) -AnnotationAssertion(rdfs:label "photodetector"@en) -AnnotationAssertion( "John Quinn"@en) + +# Class: (photodetector) + AnnotationAssertion( "photodetector"@en) -AnnotationAssertion( ) AnnotationAssertion( "A photomultiplier tube, a photo diode"@en) AnnotationAssertion( ) +AnnotationAssertion( "A photodetector is a device used to detect and measure the intensity of radiant energy through photoelectric action. In a cytometer, photodetectors measure either the number of photons of laser light scattered on impact with a cell (for example), or the flourescence emitted by excitation of a fluorescent dye."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "http://einstein.stanford.edu/content/glossary/glossary.html"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "photodetector"@en) SubClassOf( ) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A photodiode is a semiconductor photodetector used to detect light and generate an electrical current. Typically used in forward scatter (FSC) detection. The photodiode collects the forward light scatter in a cytometer."@en) + +# Class: (photodiode) + +AnnotationAssertion( "photodiode"@en) AnnotationAssertion( "Avalanche photodiode"@en) -AnnotationAssertion(rdfs:label "photodiode"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A photodiode is a semiconductor photodetector used to detect light and generate an electrical current. Typically used in forward scatter (FSC) detection. The photodiode collects the forward light scatter in a cytometer."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "http://cyto.mednet.ucla.edu/Protocols/flow.htm"@en) -AnnotationAssertion( "photodiode"@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "photodiode"@en) SubClassOf( ) -AnnotationAssertion( "http://cyto.mednet.ucla.edu/Protocols/flow.htm"@en) + +# Class: (photomultiplier tube) + AnnotationAssertion( "photomultiplier tube"@en) +AnnotationAssertion( "R9647 by manufactured by Hamamatsu"@en) AnnotationAssertion( ) AnnotationAssertion( "A photomultiplier is a device that is normally in the form of a tube, that uses a photocathode to convert photons into photoelectrons which are then amplified. PMTs are typically used to detect SSC and fluorescent parameters. Cytometers have a PMT for each color they can collect."@en) -AnnotationAssertion( "R9647 by manufactured by Hamamatsu"@en) -AnnotationAssertion(rdfs:label "photomultiplier tube"@en) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://cyto.mednet.ucla.edu/Protocols/flow.htm"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "photomultiplier tube"@en) SubClassOf( ) -AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) -AnnotationAssertion( "think this is natural thing, not a device HP/JF"^^xsd:string) + +# Class: (piezo electric crystal) + +AnnotationAssertion( "piezo electric crystal"^^xsd:string) AnnotationAssertion( "quartz piezoelectric crystal, topaz piezoelectric crystal, piezoelectric crystal in a sonar"@en) -AnnotationAssertion(rdfs:label "piezo electric crystal"@en) -AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "piezo electric crystal"^^xsd:string) AnnotationAssertion( "Apparatus in the fluidic subsystem of sorters that vibrates to break up the stream coming out of the flow chamber into droplets for sorting. The peizo electric crystal vibrates in a manner that breaks off droplets at regular intervals. Not all droplets contain a cell."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) +AnnotationAssertion( "think this is natural thing, not a device HP/JF"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "piezo electric crystal"@en) SubClassOf( ) -AnnotationAssertion( "http://www.beckmancoulter.com/literature/Bioresearch/P-10202A.pdf"@en) + +# Class: (plate loader) + +AnnotationAssertion( "plate loader"@en) +AnnotationAssertion( "FC 500 plate loader"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "plate loader"@en) AnnotationAssertion( "Part of the fluidics system. A plate loader positions the wells of a multi-well plate under the aspiration tube is a preset order. A plate loader is used for high throughput applications."@en) -AnnotationAssertion( "plate loader"@en) -AnnotationAssertion( ) -AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "measurement function is not corret as discussed on April 26 dev call. Will add new function such as positioning function. Add to tracker will discuss in the future."^^xsd:string) -AnnotationAssertion( "FC 500 plate loader"@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://www.beckmancoulter.com/literature/Bioresearch/P-10202A.pdf"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "plate loader"@en) SubClassOf( ) -AnnotationAssertion( "John Quinn"@en) -AnnotationAssertion( "A preamplifier is part of the electronics subsystem. It converts the current output from its associated detector to a voltage. The preamplifier is the first stage in analog electronics signal processing."@en) -AnnotationAssertion( ) + +# Class: (preamplifier) + +AnnotationAssertion( "preamplifier"@en) AnnotationAssertion( "Built in preamplifier in a Hamamatsu H9656 PMT"@en) AnnotationAssertion( ) -AnnotationAssertion( "preamplifier"@en) +AnnotationAssertion( "A preamplifier is part of the electronics subsystem. It converts the current output from its associated detector to a voltage. The preamplifier is the first stage in analog electronics signal processing."@en) +AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "preamplifier"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "CVF-Q-10 flow chamber, CV-Q-10 flow chamber"@en) + +# Class: (quartz cuvette flow chamber) + AnnotationAssertion( "quartz cuvette flow chamber"@en) +AnnotationAssertion( "CVF-Q-10 flow chamber, CV-Q-10 flow chamber"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A flow cell in which the laser irradiates the cell as it passes through a quartz cuvette. A quartz cuvette flow chamber can be used to allow the laser to irradiate cells."@en) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) AnnotationAssertion( ) -AnnotationAssertion( "A flow cell in which the laser irradiates the cell as it passes through a quartz cuvette. A quartz cuvette flow chamber can be used to allow the laser to irradiate cells."@en) AnnotationAssertion(rdfs:label "quartz cuvette flow chamber"@en) -AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) SubClassOf( ) + +# Class: (sheath tank) + +AnnotationAssertion( "sheath tank"@en) AnnotationAssertion( "LSR2 sheath tank"@en) -AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "Part of the fluidics system. The sheath tank is the vessel that holds the sheath fluid at a constant pressure, allowing for it to be pushed into the flow chamber at a constant rate. The sheath tank holds the pressurized sheath fluid."@en) AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( "Practical Flow Cytometry 4th Edition, Howard Shapiro, ISBN-10: 0471411256, ISBN-13: 978-0471411253"@en) -AnnotationAssertion( "sheath tank"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "sheath tank"@en) SubClassOf( ) + +# Class: (short pass filter) + +AnnotationAssertion( "short pass filter"@en) AnnotationAssertion( "620 SP filter"@en) -AnnotationAssertion( "John Quinn"@en) AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Low-pass_filter"@en) AnnotationAssertion( "A short pass filter is an optical filter that passes low wavelengths of light but attenuates (or reduces) wavelengths higher than the cutoff frequency. A short pass filter with a cutoff of 500 nm would pass all wavelengths less than 500 nm."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Low-pass_filter"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "short pass filter"@en) -AnnotationAssertion( "short pass filter"@en) SubClassOf( ) -AnnotationAssertion( "Daniel Schober"@en) + +# Class: (solid state laser) + +AnnotationAssertion( "solid state laser"@en) +AnnotationAssertion( "Solid State Heat Capacity Laser developed at DOE's Lawrence Livermore National Laboratory for the USA Army's Space and Missile Defense Command"@en) AnnotationAssertion( ) -AnnotationAssertion( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Solid-state_laser"@en) AnnotationAssertion( "A solid-state laser is a laser that uses a lasing medium that is a solid, rather than a liquid such as dye lasers or a gas such as gas lasers. Semiconductor-based diode lasers are also in the solid state, but are generally considered separately from solid-state lasers. The first laser developed was an optical pumped ruby crystal solid state laser."@en) -AnnotationAssertion( "Solid State Heat Capacity Laser developed at DOE's Lawrence Livermore National Laboratory for the USA Army's Space and Missile Defense Command"@en) +AnnotationAssertion( "Daniel Schober"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Solid-state_laser"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "solid state laser"@en) -AnnotationAssertion( "solid state laser"@en) SubClassOf( ) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "A flow_cytometer_sorter is a flow_cytometer that analyzes and separates or sorts particles passing through (based on properties measured during analysis) to collect cells of interest."@en) + +# Class: (flow cytometer sorter) + AnnotationAssertion( "flow cytometer sorter"@en) +AnnotationAssertion( "BioSorter2000, LSR2"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "flow cytometer sorter"@en) +AnnotationAssertion( "A flow_cytometer_sorter is a flow_cytometer that analyzes and separates or sorts particles passing through (based on properties measured during analysis) to collect cells of interest."@en) +AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "http://www.flocyte.com/FRTP/Resources/flow_cytometry_glossary.htm"@en) -AnnotationAssertion( "BioSorter2000, LSR2"@en) AnnotationAssertion( ) -AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion(rdfs:label "flow cytometer sorter"@en) SubClassOf( ) -AnnotationAssertion( "http://www.answers.com/topic/syringe, 2007-05-11"@en) -AnnotationAssertion( ) + +# Class: (syringe pump) + +AnnotationAssertion( "syringe pump"@en) AnnotationAssertion( "NE-1000 Single Syringe Pump"@en) +AnnotationAssertion( ) AnnotationAssertion( "Part of the fluidics system. A syringe pump can be used to inject the sample fluid and cells into the sheath fluid in the flow chamber. Syringe pumps are useful for creating stable flow rates."@en) AnnotationAssertion( "Person:John Quinn"@en) +AnnotationAssertion( "http://www.answers.com/topic/syringe, 2007-05-11"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "syringe pump"@en) -AnnotationAssertion( ) -AnnotationAssertion( "syringe pump"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "voltage amplifier"@en) + +# Class: (voltage amplifier) + +AnnotationAssertion( "voltage amplifier"@en) AnnotationAssertion( "Linear amplifier, log amplifier, microwave amplifier"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A voltage amplifier is a device that amplifies the voltage signal."@en) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( "http://en.wiktionary.org/wiki/amplifier"@en) AnnotationAssertion( "John Quinn"@en) +AnnotationAssertion( "http://en.wiktionary.org/wiki/amplifier"@en) AnnotationAssertion( ) -AnnotationAssertion( "A voltage amplifier is a device that amplifies the voltage signal."@en) -AnnotationAssertion( "voltage amplifier"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "voltage amplifier"@en) SubClassOf( ) + +# Class: (DNA sequencer) + AnnotationAssertion( "DNA sequencer"@en) AnnotationAssertion( "ABI 377 DNA Sequencer, ABI 310 DNA Sequencer"@en) -AnnotationAssertion( "MO"@en) AnnotationAssertion( ) -AnnotationAssertion( "Trish Whetzel"@en) -AnnotationAssertion(rdfs:label "DNA sequencer"@en) AnnotationAssertion( "A DNA sequencer is an instrument that determines the order of deoxynucleotides in deoxyribonucleic acid sequences."@en) +AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "MO"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA sequencer"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "array scanner"@en) -AnnotationAssertion( "Trish Whetzel"@en) -AnnotationAssertion( ) -AnnotationAssertion( "An processed material which acquires images of fluorescence (induced with lasers) from labeled molecules on the surface of the microarray chip"@en) -AnnotationAssertion( ) + +# Class: (array scanner) + AnnotationAssertion( "array scanner"@en) AnnotationAssertion( "GenePix 4200A, GenePix4000B"@en) +AnnotationAssertion( ) +AnnotationAssertion( "An processed material which acquires images of fluorescence (induced with lasers) from labeled molecules on the surface of the microarray chip"@en) +AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "GROUP: MGED Ontology"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "array scanner"@en) SubClassOf( ) -AnnotationAssertion( "Trish Whetzel"@en) + +# Class: (arrayer) + AnnotationAssertion( "arrayer"@en) +AnnotationAssertion( "BioRobotics Microgrid II TAS, Affymetrix GMS 417"@en) +AnnotationAssertion( ) AnnotationAssertion( "a device which deposits biological material onto a substrate in a defined pattern."@en) +AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "MO_697 arrayer"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "arrayer"@en) -AnnotationAssertion( ) -AnnotationAssertion( "MO_697 arrayer"@en) -AnnotationAssertion( "BioRobotics Microgrid II TAS, Affymetrix GMS 417"@en) SubClassOf( ) + +# Class: (centrifuge) + AnnotationAssertion( "centrifuge"@en) +AnnotationAssertion( ) AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion(rdfs:comment "A device with a rapidly rotating container that applies centrifugal force to its contents"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "centrifuge"@en) -AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "Person: Jennifer Fostel"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Centrifuge"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:comment "A device with a rapidly rotating container that applies centrifugal force to its contents"^^xsd:string) +AnnotationAssertion(rdfs:label "centrifuge"@en) SubClassOf( ) -AnnotationAssertion( "http://en.wikipedia.org/wiki/Computer"@en) -AnnotationAssertion( ) -AnnotationAssertion( "A computer is an instrument which manipulates (stores, retrieves, and processes) data according to a list of instructions."@en) -AnnotationAssertion( "Melanie Courtot"@en) + +# Class: (computer) + AnnotationAssertion( "computer"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "computer"@en) AnnotationAssertion( "Apple PowerBook, Dell OptiPlex"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A computer is an instrument which manipulates (stores, retrieves, and processes) data according to a list of instructions."@en) +AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "http://en.wikipedia.org/wiki/Computer"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "computer"@en) SubClassOf( ) -AnnotationAssertion( "A heating block is an instrument or part of an instrument which raises or maintains the temperature of a sample to a defined constant temperature during certain parts of an assay"@en) -AnnotationAssertion( ) + +# Class: (heating block) + AnnotationAssertion( "heating block"@en) -AnnotationAssertion( "MO"@en) -AnnotationAssertion(rdfs:label "heating block"@en) +AnnotationAssertion( "An instrument used to heat and/or maintain material at a set temperature."@en) AnnotationAssertion( ) +AnnotationAssertion( "A heating block is an instrument or part of an instrument which raises or maintains the temperature of a sample to a defined constant temperature during certain parts of an assay"@en) AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( "An instrument used to heat and/or maintain material at a set temperature."@en) +AnnotationAssertion( "MO"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "heating block"@en) SubClassOf( ) -AnnotationAssertion( "A homogenizer is an instrument for the homogenization of various types of material, such as tissue, plant, food, soil, and many others."@en) -AnnotationAssertion( "Trish Whetzel"@en) + +# Class: (homogenizer) + +AnnotationAssertion( "homogenizer"@en) +AnnotationAssertion( "mortar, blender"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "homogenizer"@en) +AnnotationAssertion( "A homogenizer is an instrument for the homogenization of various types of material, such as tissue, plant, food, soil, and many others."@en) AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "homogenizer"@en) +AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Homogenizer"@en) AnnotationAssertion( ) -AnnotationAssertion( "mortar, blender"@en) +AnnotationAssertion(rdfs:label "homogenizer"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "hybridization chamber"@en) + +# Class: (hybridization chamber) + +AnnotationAssertion( "hybridization chamber"@en) AnnotationAssertion( "Glass Array Hybridization Cassette"@en) -AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( ) AnnotationAssertion( "A device which is used to maintain constant contact of a liquid on an array. This can be either a glass vial or slide."@en) +AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "MO_563 hybridization_chamber"@en) -AnnotationAssertion( "hybridization chamber"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hybridization chamber"@en) SubClassOf( ) -AnnotationAssertion( "A device which is used to maintain the temperature of one or more hybridization_chamber(s) at a defined, constant temperature."@en) -AnnotationAssertion( "Labnet Problot12"@en) + +# Class: (hybridization station) + AnnotationAssertion( "hybridization station"@en) +AnnotationAssertion( "Labnet Problot12"@en) AnnotationAssertion( ) -AnnotationAssertion( "MO_497 hybridization station"@en) +AnnotationAssertion( "A device which is used to maintain the temperature of one or more hybridization_chamber(s) at a defined, constant temperature."@en) AnnotationAssertion( "Trish Whetzel"@en) -AnnotationAssertion(rdfs:label "hybridization station"@en) +AnnotationAssertion( "MO_497 hybridization station"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "hybridization station"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (liquid handler) + AnnotationAssertion( "liquid handler"@en) +AnnotationAssertion( "Beckman BioMek 2000"@en) AnnotationAssertion( ) -AnnotationAssertion( "MO_868 liquid_handler"@en) +AnnotationAssertion( "a device that is used for automated liquid transfer and handling."@en) AnnotationAssertion( "liquid_handling_instrument"@en) +AnnotationAssertion( "MO_868 liquid_handler"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "liquid handler"@en) -AnnotationAssertion( "Beckman BioMek 2000"@en) -AnnotationAssertion( "a device that is used for automated liquid transfer and handling."@en) SubClassOf( ) -AnnotationAssertion( "Trish Whetzel"@en) -AnnotationAssertion(rdfs:label "oligonucleotide synthesizer"@en) -AnnotationAssertion( "An instrument used to chemically synthesize oligonucleotides."@en) -AnnotationAssertion( ) + +# Class: (oligonucleotide synthesizer) + AnnotationAssertion( "oligonucleotide synthesizer"@en) AnnotationAssertion( "Automated Multiplex Oligonucleotide Synthesizer"@en) -AnnotationAssertion( "MO"@en) AnnotationAssertion( ) +AnnotationAssertion( "An instrument used to chemically synthesize oligonucleotides."@en) +AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "MO"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oligonucleotide synthesizer"@en) SubClassOf( ) + +# Class: (sonicator) + AnnotationAssertion( "sonicator"@en) -AnnotationAssertion( ) -AnnotationAssertion( "MO"@en) AnnotationAssertion( "Sonicator 3000"@en) -AnnotationAssertion(rdfs:label "sonicator"@en) AnnotationAssertion( ) -AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "An instrument that converts a variable electrical current to mechanical vibration of a metallic probe. The instrument is used for the lysis of cells, the mixing of compounds or solutions, or to create emulsions."@en) +AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "MO"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sonicator"@en) SubClassOf( ) -AnnotationAssertion( "A spectrophotometer is an instrument that measures the intensity of light as a function of the color, or more specifically, the wavelength of light, transmitted by a substance."@en) -AnnotationAssertion(rdfs:label "spectrophotometer"@en) -AnnotationAssertion( ) + +# Class: (spectrophotometer) + +AnnotationAssertion( "spectrophotometer"@en) AnnotationAssertion( "Helios Gamma Spectrophotometer"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A spectrophotometer is an instrument that measures the intensity of light as a function of the color, or more specifically, the wavelength of light, transmitted by a substance."@en) AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "MO"@en) AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "MO"@en) AnnotationAssertion( ) -AnnotationAssertion( "spectrophotometer"@en) +AnnotationAssertion(rdfs:label "spectrophotometer"@en) SubClassOf( ) -AnnotationAssertion( "An instrument that is capable of repeatedly altering and maintaining specific temperatures for defined periods of time."@en) -AnnotationAssertion(rdfs:label "thermal cycler"@en) + +# Class: (thermal cycler) + +AnnotationAssertion( "thermal cycler"@en) +AnnotationAssertion( "Piko(tm) 96-well Thermal Cycler"@en) AnnotationAssertion( ) -AnnotationAssertion( "DNA_amplifier"@en) +AnnotationAssertion( "An instrument that is capable of repeatedly altering and maintaining specific temperatures for defined periods of time."@en) +AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "DNA_amplifier"@en) +AnnotationAssertion( "PCR_machine"@en) +AnnotationAssertion( "Polymerase_Chain_Reaction_ machine"@en) AnnotationAssertion( "thermocycler"@en) -AnnotationAssertion( ) -AnnotationAssertion( "thermal cycler"@en) AnnotationAssertion( "MO"@en) -AnnotationAssertion( "Polymerase_Chain_Reaction_ machine"@en) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "Piko(tm) 96-well Thermal Cycler"@en) -AnnotationAssertion( "PCR_machine"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "thermal cycler"@en) SubClassOf( ) -AnnotationAssertion( "Trish Whetzel"@en) + +# Class: (vacuum dryer) + +AnnotationAssertion( "vacuum dryer"@en) AnnotationAssertion( "Model 777 Microarray Oven"@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "vacuum dryer"@en) AnnotationAssertion( "An instrument which removes liquid by the application of negative pressure, i.e. vacuum."@en) +AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "MO"@en) AnnotationAssertion( ) -AnnotationAssertion( "vacuum dryer"@en) +AnnotationAssertion(rdfs:label "vacuum dryer"@en) SubClassOf( ) + +# Class: (vortexer) + AnnotationAssertion( "vortexer"@en) -AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "VWR Genie 2"@en) -AnnotationAssertion(rdfs:label "vortexer"@en) AnnotationAssertion( ) +AnnotationAssertion( "A vortexer is an instrument that mixes small vials of liquid by creating a rotation of the liquid around its own center. It consists of an electric motor with the drive shaft oriented vertically and attached to a cupped rubber piece mounted slightly off-center. As the motor runs the rubber piece oscillates rapidly in a circular motion. When a test tube or other appropriate container is pressed into the rubber cup (or touched to its edge) the motion is transmitted to the liquid inside and a vortex is created."@en) +AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "vortex_mixer"@en) AnnotationAssertion( "http://en.wikipedia.org/wiki/Vortex_mixer"@en) -AnnotationAssertion( "A vortexer is an instrument that mixes small vials of liquid by creating a rotation of the liquid around its own center. It consists of an electric motor with the drive shaft oriented vertically and attached to a cupped rubber piece mounted slightly off-center. As the motor runs the rubber piece oscillates rapidly in a circular motion. When a test tube or other appropriate container is pressed into the rubber cup (or touched to its edge) the motion is transmitted to the liquid inside and a vortex is created."@en) AnnotationAssertion( ) -AnnotationAssertion( "vortex_mixer"@en) +AnnotationAssertion(rdfs:label "vortexer"@en) SubClassOf( ) + +# Class: (microarray wash station) + AnnotationAssertion( "microarray wash station"@en) +AnnotationAssertion( "ArrayIt(r) Microarray Wash Station"@en) AnnotationAssertion( ) AnnotationAssertion( "a device that is used to wash Affymetrix-type arrays."@en) -AnnotationAssertion(rdfs:label "microarray wash station"@en) AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "MO_626 wash_station"@en) AnnotationAssertion( ) -AnnotationAssertion( "ArrayIt(r) Microarray Wash Station"@en) +AnnotationAssertion(rdfs:label "microarray wash station"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "temperature control bath"@en) -AnnotationAssertion( ) + +# Class: (temperature control bath) + +AnnotationAssertion( "temperature control bath"@en) +AnnotationAssertion( "VWR Signature Deep-Chamber Heated Water Bath. A water bath is used for temperatures up to 100 degrees C. An oil bath is employed for temperatures over 100 degrees C."@en) AnnotationAssertion( ) +AnnotationAssertion( "A temperature_control_bath is a device that has the function to regulate the temperature of a material, the function to contain fluid and the function to vary and maintain the temperature of the contained fluid. Heat exchange (energy transfer) between the material and the heating element is facilitated via the contained fluid. A temperature_control_bath is composed of a container, a heating element and/or a cooling element and a means to adjust the needed temperature. In most cases also a timer and a means to stir the fluid is provided as well."@en) +AnnotationAssertion( "Alan Ruttenburg"^^xsd:string) +AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( "temperature control bath"@en) AnnotationAssertion( "OBI Instrument branch"^^xsd:string) -AnnotationAssertion( "Alan Ruttenburg"^^xsd:string) AnnotationAssertion( "DS: This was heated_bath. It was renamed to reflect the possability that the same bath can be used for cooling. We can now define the temperature variables and based on that infer if it is a cooling device or a heating device (also quite relative to surrounding temperature)."@en) -AnnotationAssertion( "Daniel Schober"^^xsd:string) -AnnotationAssertion( "VWR Signature Deep-Chamber Heated Water Bath. A water bath is used for temperatures up to 100 degrees C. An oil bath is employed for temperatures over 100 degrees C."@en) -AnnotationAssertion( "A temperature_control_bath is a device that has the function to regulate the temperature of a material, the function to contain fluid and the function to vary and maintain the temperature of the contained fluid. Heat exchange (energy transfer) between the material and the heating element is facilitated via the contained fluid. A temperature_control_bath is composed of a container, a heating element and/or a cooling element and a means to adjust the needed temperature. In most cases also a timer and a means to stir the fluid is provided as well."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "temperature control bath"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "AL: if we intend that other ontologies can be used in conjunction with OBI, we shouldn't have such a general term used specifically for chemically joining two or more molecules. I'm sure there are other \"crosslinkers\" that are on a much different scale in engineering etc. I have moved the original label to be an alternative term, and have renamed the main label accordingly."@en) -AnnotationAssertion( ) + +# Class: (molecular crosslinker) + AnnotationAssertion( "molecular crosslinker"@en) -AnnotationAssertion( "Trish Whetzel"@en) +AnnotationAssertion( "Stratalinker"@en) +AnnotationAssertion( ) AnnotationAssertion( "a device that is able to chemically join two or more molecules."@en) +AnnotationAssertion( "AL: if we intend that other ontologies can be used in conjunction with OBI, we shouldn't have such a general term used specifically for chemically joining two or more molecules. I'm sure there are other \"crosslinkers\" that are on a much different scale in engineering etc. I have moved the original label to be an alternative term, and have renamed the main label accordingly."@en) +AnnotationAssertion( "Trish Whetzel"@en) AnnotationAssertion( "molecular crosslinker"@en) -AnnotationAssertion( "Stratalinker"@en) AnnotationAssertion( "MO ?? cannot be found in MO"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "molecular crosslinker"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "image cytometer"@en) -AnnotationAssertion( ) -AnnotationAssertion( "http://web.mit.edu/solab/Research/ImageCytometry.html"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"@en) + +# Class: (image cytometer) + +AnnotationAssertion( "image cytometer"@en) AnnotationAssertion( "The most common current application of image cytometry is for DNA analysis, followed by quantitation of immunohistochemical staining."@en) +AnnotationAssertion( ) AnnotationAssertion( "An image_cytometer is an instrument for image-based study or measurement of cells."@en) -AnnotationAssertion( "image cytometer"@en) +AnnotationAssertion( "Melanie Courtot"@en) +AnnotationAssertion( "http://web.mit.edu/solab/Research/ImageCytometry.html"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "image cytometer"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (cytometer) + AnnotationAssertion( "cytometer"@en) -AnnotationAssertion(rdfs:label "cytometer"@en) -AnnotationAssertion( "http://medical.merriam-webster.com/medical/cytometer"@en) -AnnotationAssertion( "Melanie Courtot"@en) AnnotationAssertion( ) AnnotationAssertion( "A cytometer is an instrument for counting and measuring cells."@en) +AnnotationAssertion( "Melanie Courtot"@en) +AnnotationAssertion( "http://medical.merriam-webster.com/medical/cytometer"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cytometer"@en) SubClassOf( ) + +# Class: (gel tank) + AnnotationAssertion( "gel tank"@en) -AnnotationAssertion(rdfs:label "gel tank"@en) +AnnotationAssertion( "CHEF gel box, slab gel box, capillary electrophoresis"@en) +AnnotationAssertion( ) AnnotationAssertion( "a device which holds a gel and running buffers to allow electrophoresis to be performed. A gel tank has the function to contain and to control the contained environment and transfer energy from an energy supply through the running buffers to the gel matrix and the material with charged molecules in an electric field across a porous matrix or medium with the objective to separate the charged molecules."@en) AnnotationAssertion( "Person:Frank Gibson"^^xsd:string) -AnnotationAssertion( "CHEF gel box, slab gel box, capillary electrophoresis"@en) +AnnotationAssertion( "Person:Kevin Clancy"@en) +AnnotationAssertion( "electrophoresis box"@en) AnnotationAssertion( "electrophoresis unit"@en) AnnotationAssertion( "sep:00095"@en) -AnnotationAssertion( ) -AnnotationAssertion( "electrophoresis box"@en) -AnnotationAssertion( "Person:Kevin Clancy"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gel tank"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Daniel Schober"@en) -AnnotationAssertion( "power pack"@en) -AnnotationAssertion( "electrical power supply"@en) -AnnotationAssertion( "Frank Gibson"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "power supply"@en) + +# Class: (power supply) + AnnotationAssertion( "power supply"@en) -AnnotationAssertion( "power supply unit"@en) -AnnotationAssertion( "was power_pack, maps to SEP electrical_power_supply"@en) -AnnotationAssertion( "A power supply is an device or part of a device that permits the required application of a defined electrical charge to an instrument. The power supply may permit the defined application of a given amount of current for a defined length of time."@en) AnnotationAssertion( "A AC/DC transformer that generates the reqired power for an electrophoresis apparatus"@en) -AnnotationAssertion( "sep:00093"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A power supply is an device or part of a device that permits the required application of a defined electrical charge to an instrument. The power supply may permit the defined application of a given amount of current for a defined length of time."@en) +AnnotationAssertion( "Daniel Schober"@en) +AnnotationAssertion( "Frank Gibson"^^xsd:string) AnnotationAssertion( "PSU"@en) +AnnotationAssertion( "electrical power supply"@en) +AnnotationAssertion( "power pack"@en) +AnnotationAssertion( "power supply unit"@en) AnnotationAssertion( "PERSON: Daniel Schober"@en) +AnnotationAssertion( "sep:00093"^^xsd:string) +AnnotationAssertion( "was power_pack, maps to SEP electrical_power_supply"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "power supply"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "fluorometer"@en) -AnnotationAssertion( "Kevin Lister"@en) -AnnotationAssertion( ) + +# Class: (fluorometer) + +AnnotationAssertion( "fluorometer"@en) +AnnotationAssertion( "laser/detector in capillary electrophoresis apparatus, NanoDrop ND-3300"@en) +AnnotationAssertion( ) AnnotationAssertion( "A fluorometer is an instrument for the detection and measurement of parameters of fluoresence, which in turn are used to identify the presence and amount of specific molecules in the sample."@en) AnnotationAssertion( "Allyson Lister"@en) -AnnotationAssertion( "laser/detector in capillary electrophoresis apparatus, NanoDrop ND-3300"@en) +AnnotationAssertion( "Kevin Lister"@en) AnnotationAssertion( "OBI"@en) -AnnotationAssertion( ) -AnnotationAssertion( "fluorometer"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "fluorometer"@en) SubClassOf( ) + +# Class: (multispectral imaging flow cytometer) + AnnotationAssertion( "multispectral imaging flow cytometer"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A multispectral_imaging_flow_cytometer is an instrument which combines quantitative image analysis and flow cytometry in a single platform. It measures the amount, location and movement of molecules on, in, or between cells, and the location and co-localization of multiple markers on or in cells. It can also quantitate morphologically distinct cell subpopulations."@en) +AnnotationAssertion( "Melanie Courtot"@en) +AnnotationAssertion( "MIFC"@en) AnnotationAssertion( "http://www.amnis.com/"@en) AnnotationAssertion( ) -AnnotationAssertion( "Melanie Courtot"@en) -AnnotationAssertion( "A multispectral_imaging_flow_cytometer is an instrument which combines quantitative image analysis and flow cytometry in a single platform. It measures the amount, location and movement of molecules on, in, or between cells, and the location and co-localization of multiple markers on or in cells. It can also quantitate morphologically distinct cell subpopulations."@en) AnnotationAssertion(rdfs:label "multispectral imaging flow cytometer"@en) -AnnotationAssertion( "MIFC"@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microarray"@en) + +# Class: (microarray) + AnnotationAssertion( "microarray"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "An affymetrix U133 array is a microarray. Microarrays include 1 and 2-color arrays, custom and commercial arrays (e.g, Affymetrix, Agilent, Nimblegen, Illumina, etc.) for expression profiling, DNA variant detection, protein binding, and other genomic and functional genomic assays."^^xsd:string) +AnnotationAssertion( ) AnnotationAssertion( "A processed material that is made to be used in an analyte assay. It consists of a physical immobilisation matrix in which substances that bind the analyte are placed in regular spatial position."@en) +AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "PERSON: Chris Stoeckert"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microarray"@en) SubClassOf( ObjectSomeValuesFrom( )) -AnnotationAssertion( "A DNA-microarray is a microarray that is used as a physical 2D immobilisation matrix for DNA sequences. DNA microarray-bound DNA fragments are used as targets for a hybridising probed sample."@en) + +# Class: (DNA microarray) + AnnotationAssertion( "DNA microarray"@en) -AnnotationAssertion(rdfs:label "DNA microarray"@en) -AnnotationAssertion( "DNA Chip"@en) +AnnotationAssertion( "Moran G, Stokes C, Thewes S, Hube B, Coleman DC, Sullivan D (2004). \"Comparative genomics using Candida albicans DNA microarrays reveals absence and divergence of virulence-associated genes in Candida dubliniensis\". Microbiology 150: 3363-3382. doi:10.1099/mic.0.27221-0. PMID 15470115"@en) +AnnotationAssertion( ) +AnnotationAssertion( "A DNA-microarray is a microarray that is used as a physical 2D immobilisation matrix for DNA sequences. DNA microarray-bound DNA fragments are used as targets for a hybridising probed sample."@en) +AnnotationAssertion( "PERSON: Daniel Schober"@en) AnnotationAssertion( "PERSON: Frank Gibson"^^xsd:string) -AnnotationAssertion( "Web:@2008/03/03"^^xsd:string) +AnnotationAssertion( "DNA Chip"@en) AnnotationAssertion( "DNA-array"@en) -AnnotationAssertion( ) +AnnotationAssertion( "Web:@2008/03/03"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( "Moran G, Stokes C, Thewes S, Hube B, Coleman DC, Sullivan D (2004). \"Comparative genomics using Candida albicans DNA microarrays reveals absence and divergence of virulence-associated genes in Candida dubliniensis\". Microbiology 150: 3363-3382. doi:10.1099/mic.0.27221-0. PMID 15470115"@en) -AnnotationAssertion( "PERSON: Daniel Schober"@en) +AnnotationAssertion(rdfs:label "DNA microarray"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "protein microarray"@en) + +# Class: (protein microarray) + AnnotationAssertion( "protein microarray"@en) -AnnotationAssertion( ) +AnnotationAssertion( "The most common protein microarray is the antibody microarray, where antibodies are spotted onto the protein chip and are used as capture molecules to detect proteins from cell lysate solutions."@en) AnnotationAssertion( ) +AnnotationAssertion( "A protein-microarray is a microarray, ususlly a piece of glass, on which different molecules of protein have been affixed at separate locations in an ordered manner. These are used to identify protein-protein or protein-small molecule interactions."@en) AnnotationAssertion( "Daniel Schober"@en) AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) -AnnotationAssertion( "A protein-microarray is a microarray, ususlly a piece of glass, on which different molecules of protein have been affixed at separate locations in an ordered manner. These are used to identify protein-protein or protein-small molecule interactions."@en) -AnnotationAssertion( "The most common protein microarray is the antibody microarray, where antibodies are spotted onto the protein chip and are used as capture molecules to detect proteins from cell lysate solutions."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protein microarray"@en) SubClassOf( ) -AnnotationAssertion( "OBI Instrument branch"^^xsd:string) -AnnotationAssertion(rdfs:label "droplet sorter"@en) -AnnotationAssertion( "OBI Instrument branch"^^xsd:string) + +# Class: (droplet sorter) + AnnotationAssertion( "droplet sorter"@en) -AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "OBI Instrument branch"^^xsd:string) +AnnotationAssertion( "OBI Instrument branch"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "droplet sorter"@en) SubClassOf( ) -AnnotationAssertion( ) + +# Class: (water bath) + AnnotationAssertion( "water bath"@en) -AnnotationAssertion(rdfs:label "water bath"@en) -AnnotationAssertion( "A water bath is a temperature control bath in which a water acts as contact medium enabling temperature transfer from the heating element or cooling element to the sample. The temperature can be controlled in the 0 to 100 degree centigrade range (under normal pressure)."@en) AnnotationAssertion( "A water bath was used to allow for cell incubation at 38 degree centigrade for 8 hours."@en) -AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "A water bath is a temperature control bath in which a water acts as contact medium enabling temperature transfer from the heating element or cooling element to the sample. The temperature can be controlled in the 0 to 100 degree centigrade range (under normal pressure)."@en) AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "water bath"@en) SubClassOf( ) -AnnotationAssertion( "An oil bath is a temperature control bath in which oil acts as contact medium for the temperature transfer (from heating or cooling elements to the sample)."@en) -AnnotationAssertion(rdfs:label "oil bath"@en) -AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) -AnnotationAssertion( ) + +# Class: (oil bath) + AnnotationAssertion( "oil bath"@en) -AnnotationAssertion( ) AnnotationAssertion( "An oil bath was used to allow for fast reaction of two chemical compounds during a 2 hour period."@en) +AnnotationAssertion( ) +AnnotationAssertion( "An oil bath is a temperature control bath in which oil acts as contact medium for the temperature transfer (from heating or cooling elements to the sample)."@en) AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "oil bath"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "digital-to-analog converter"@en) -AnnotationAssertion( ) + +# Class: (digital-to-analog converter) + AnnotationAssertion( "digital-to-analog converter"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) -AnnotationAssertion( "Daniel Schober"^^xsd:string) AnnotationAssertion( "A digital-to-analog_converter is used to convert a computergenerated discrete signal into a continuous analog one, e.g. a sound."@en) +AnnotationAssertion( ) AnnotationAssertion( "A digital-to-analog_converter is an instrument that converts a finite resolution digital signal into an infinite resolution analog signal."@en) +AnnotationAssertion( "Daniel Schober"^^xsd:string) +AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "digital-to-analog converter"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Phillippe Rocca-Serra"^^xsd:string) -AnnotationAssertion(rdfs:label "microtome"@en) -AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) -AnnotationAssertion( "A microtome is a mechanical instrument used to cut biological specimens into very thin segments for further treatment (e.g. ISH) and ultimately microscopic or histologic examination. Most microtomes provide cooling facilities (cryo-microtome) and use a steel blade to cut a slice of defined thickness. Some are automatic, and some are driven by hand."@en) -AnnotationAssertion( "PMID: 9974145.Serial sectioning of thick tissue with a novel vibrating blade microtome. Brain Res Brain Res Protoc. 1999 Jan;3(3):302-7."@en) + +# Class: (microtome) + AnnotationAssertion( "microtome"@en) +AnnotationAssertion( "PMID: 9974145.Serial sectioning of thick tissue with a novel vibrating blade microtome. Brain Res Brain Res Protoc. 1999 Jan;3(3):302-7."@en) AnnotationAssertion( ) +AnnotationAssertion( "A microtome is a mechanical instrument used to cut biological specimens into very thin segments for further treatment (e.g. ISH) and ultimately microscopic or histologic examination. Most microtomes provide cooling facilities (cryo-microtome) and use a steel blade to cut a slice of defined thickness. Some are automatic, and some are driven by hand."@en) +AnnotationAssertion( "PERSON: Phillippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "PERSON: Daniel Schober"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microtome"@en) SubClassOf( ) -AnnotationAssertion( "wikipedia"^^xsd:string) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "microscope"@en) -AnnotationAssertion( "A microscope is an instrument which magnifies the view on objects (too small to be viewed by the naked eye) under increased resolution. A microscope can be an optical instrument but also and electronic instrument. There are various kind of optical microscopes, e.g confocal microscope, epifluoresence microscope)"@en) -AnnotationAssertion( "PERSON: Phillippe Rocca-Serra"^^xsd:string) + +# Class: (microscope) + AnnotationAssertion( "microscope"@en) AnnotationAssertion( "PMID:18466942. A light and transmission electron microscope study of hepatic portal tracts in the rhesus monkey (Macacus rhesus). Tissue Cell. 2008 May 6"@en) AnnotationAssertion( ) +AnnotationAssertion( "A microscope is an instrument which magnifies the view on objects (too small to be viewed by the naked eye) under increased resolution. A microscope can be an optical instrument but also and electronic instrument. There are various kind of optical microscopes, e.g confocal microscope, epifluoresence microscope)"@en) +AnnotationAssertion( "PERSON: Phillippe Rocca-Serra"^^xsd:string) +AnnotationAssertion( "wikipedia"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "microscope"@en) SubClassOf( ) + +# Class: (animal cage) + +AnnotationAssertion( "animal cage"@en) AnnotationAssertion( "PMID: 18246864.Barthold SW.Effects of cage density on behavior in young adult mice."@en) +AnnotationAssertion( ) AnnotationAssertion( "a processed material which has the function to define a bounded habitat which is amenable to keeping animals."@en) +AnnotationAssertion( "PERSON: Phillippe Rocca-Serra"^^xsd:string) AnnotationAssertion( "laboratory cage"@en) -AnnotationAssertion( "animal cage"@en) -AnnotationAssertion(rdfs:label "animal cage"@en) -AnnotationAssertion( ) AnnotationAssertion( "OBI biomaterial branch"^^xsd:string) -AnnotationAssertion( "PERSON: Phillippe Rocca-Serra"^^xsd:string) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "animal cage"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON: Chris Stoeckert"^^xsd:string) + +# Class: (study design) + AnnotationAssertion( "study design"@en) -AnnotationAssertion( "A study design is a plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution."^^xsd:string) AnnotationAssertion( "a matched pairs study design describes criteria by which subjects are identified as pairs which then undergo the same protocols, and the data generated is analyzed by comparing the differences between the paired subjects, which constitute the results of the executed study design."@en) +AnnotationAssertion( ) +AnnotationAssertion( "A study design is a plan specification comprised of protocols (which may specify how and what kinds of data will be gathered) that are executed as part of an investigation and is realized during a study design execution."^^xsd:string) AnnotationAssertion( "Editor note: there is at least an implicit restriction on the kind of data transformations that can be done based on the measured data available."^^xsd:string) -AnnotationAssertion( "rediscussed at length (MC/JF/BP). 12/9/08). The definition was clarified to differentiate it from protocol."@en) +AnnotationAssertion( "PERSON: Chris Stoeckert"^^xsd:string) AnnotationAssertion( "experimental design"@en) +AnnotationAssertion( "rediscussed at length (MC/JF/BP). 12/9/08). The definition was clarified to differentiate it from protocol."@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "study design"@en) SubClassOf( ) -AnnotationAssertion( "tumor grading"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "tumor grading"@en) -AnnotationAssertion( "Compiled by Helen Parkinson for Transcriptomics thanks to Adam Witney"@en) -AnnotationAssertion( "Determination of the grade (severity/stage) of a tumor sample, used in cancer biology to describe abnormalities/qualities of tumor cells or tissues. Values can be described by terms from NCI Thesaurus."@en) + +# Class: (tumor grading) + +AnnotationAssertion( "tumor grading"@en) AnnotationAssertion( ) +AnnotationAssertion( "Determination of the grade (severity/stage) of a tumor sample, used in cancer biology to describe abnormalities/qualities of tumor cells or tissues. Values can be described by terms from NCI Thesaurus."@en) +AnnotationAssertion( "Compiled by Helen Parkinson for Transcriptomics thanks to Adam Witney"@en) AnnotationAssertion( "grading of tumor"@en) AnnotationAssertion( "OBI branch derived; submitted by MO"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "tumor grading"@en) SubClassOf( ) + +# Class: (performing a clinical assessment) + +AnnotationAssertion( "performing a clinical assessment"^^xsd:string) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application during which a series of tests are made of a patient leading to determination of disease state, or condition."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "clinical diagnosis"^^xsd:string) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( "(maybe CIO)"@en) AnnotationAssertion( ) -AnnotationAssertion( "clinical diagnosis"^^xsd:string) AnnotationAssertion(rdfs:label "performing a clinical assessment"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "performing a clinical assessment"^^xsd:string) -AnnotationAssertion( "a protocol application during which a series of tests are made of a patient leading to determination of disease state, or condition."@en) -AnnotationAssertion( ) SubClassOf( ) + +# Class: (collecting specimen from organism) + +AnnotationAssertion( "collecting specimen from organism"@en) +AnnotationAssertion( "taking a sputum sample from a cancer patient, taking the spleen from a killed mouse, collecting a urine sample from a patient"@en) AnnotationAssertion( ) +AnnotationAssertion( "a process with the objective to obtain a material entity that was part of an organism for potential future use in an investigation"@en) AnnotationAssertion( "PERSON:Bjoern Peters"@en) AnnotationAssertion( "IEDB"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "collecting specimen from organism"@en) -AnnotationAssertion( "collecting specimen from organism"@en) -AnnotationAssertion( "a process with the objective to obtain a material entity that was part of an organism for potential future use in an investigation"@en) -AnnotationAssertion( "taking a sputum sample from a cancer patient, taking the spleen from a killed mouse, collecting a urine sample from a patient"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "environmental material collection"@en) -AnnotationAssertion( "IEDB"@en) -AnnotationAssertion( "the researcher is very interested in the location"@en) -AnnotationAssertion( "environmental_material_collection is an acquisition where an object is taken from an environment and put into a storage container. Roles include, environment, thing collected, container, acquirer."@en) -AnnotationAssertion( "Taking 1 liter of surface ocean water from the San Diego Mission Bay Jetty. Capturing mice living in rural Arkansas"@en) + +# Class: (environmental material collection) + AnnotationAssertion( "environmental material collection"@en) -AnnotationAssertion( "Bjoern Peters, Alan Ruttenberg"@en) +AnnotationAssertion( "Taking 1 liter of surface ocean water from the San Diego Mission Bay Jetty. Capturing mice living in rural Arkansas"@en) AnnotationAssertion( ) +AnnotationAssertion( "environmental_material_collection is an acquisition where an object is taken from an environment and put into a storage container. Roles include, environment, thing collected, container, acquirer."@en) +AnnotationAssertion( "Bjoern Peters, Alan Ruttenberg"@en) +AnnotationAssertion( "IEDB"@en) +AnnotationAssertion( "the researcher is very interested in the location"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "environmental material collection"@en) SubClassOf( ) -AnnotationAssertion( "a material processing in which components of an input material become segregated in space"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "material component separation"@en) -AnnotationAssertion( "IEDB"@en) + +# Class: (material component separation) + AnnotationAssertion( "material component separation"@en) AnnotationAssertion( "Using a cell sorter to separate a mixture of T cells into two fractions; one with surface receptor CD8 and the other lacking the receptor, or purification"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "a material processing in which components of an input material become segregated in space"@en) AnnotationAssertion( "Bjoern Peters"@en) +AnnotationAssertion( "IEDB"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "material component separation"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Bjoern Peters"@en) -AnnotationAssertion(rdfs:label "detection of label"@en) + +# Class: (detection of label) + AnnotationAssertion( "detection of label"@en) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "the detection of the amount of a label which is a proxy for the detection of the labeled biomaterial"@en) AnnotationAssertion( "Determination of the amount of phycoerytherin label present in a cell population stained with anti-CD8-PE in order to determine the percentage of CD8+ T cells present"@en) AnnotationAssertion( ) +AnnotationAssertion( "the detection of the amount of a label which is a proxy for the detection of the labeled biomaterial"@en) +AnnotationAssertion( "PERSON:Bjoern Peters"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "detection of label"@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "PRS:20090901: addition of alternative term = histopathology"^^xsd:string) + +# Class: (histology) + +AnnotationAssertion( "histology"@en) AnnotationAssertion( "the counting of the number of cells with fluorescent label at their surface to determine the percentage of the population which was activated"@en) -AnnotationAssertion( "histopathology"^^xsd:string) -AnnotationAssertion(rdfs:label "histology"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Compiled by Helen Parkinson for Transcriptomics thanks to Adam Witney"@en) AnnotationAssertion( "the visual examination of cells or tissue (or images of them) with an assessment regarding a quality of the cells or tissue. Parts are: staining, imaging, judgement"@en) -AnnotationAssertion( "histology"@en) -AnnotationAssertion( ) +AnnotationAssertion( "PERSON:Compiled by Helen Parkinson for Transcriptomics thanks to Adam Witney"@en) +AnnotationAssertion( "histopathology"^^xsd:string) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "PRS:20090901: addition of alternative term = histopathology"^^xsd:string) AnnotationAssertion( "need to incorporate parts\\n---\\nThis is a very vague term, it should be in the same place as transcriptomics, proteomics metaboloimcs. It is the 'study' of tissues, not the process of studying tissues\\n"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "histology"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Bjoern Peters"@en) -AnnotationAssertion( "we could generalize this for other input materials"@en) -AnnotationAssertion( "a protocol application to preserve defined qualities of cells or tissues (sample) which may otherwise change over time"@en) -AnnotationAssertion( "should include capturing what qualities are being preserved"@en) -AnnotationAssertion(rdfs:label "cell fixation"@en) -AnnotationAssertion( ) + +# Class: (cell fixation) + AnnotationAssertion( "cell fixation"@en) AnnotationAssertion( "http://www.tissuearray.org/CellLinesProtocolforTMA112.pdf; the treatment of CD8+ cells with methanol at -20oC; http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16080188&dopt=AbstractPlus"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application to preserve defined qualities of cells or tissues (sample) which may otherwise change over time"@en) +AnnotationAssertion( "should include capturing what qualities are being preserved"@en) +AnnotationAssertion( "PERSON:Bjoern Peters"@en) AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "we could generalize this for other input materials"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cell fixation"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "Cutting out the portion of a gel which contains a DNA fragment"@en) + +# Class: (excision) + AnnotationAssertion( "excision"@en) -AnnotationAssertion( "www.crohnsresource.com/glossary.jsp (via google define:resection)"@en) +AnnotationAssertion( "Cutting out the portion of a gel which contains a DNA fragment"@en) +AnnotationAssertion( ) AnnotationAssertion( "the use physical means to remove a portion of a substance from the rest"@en) -AnnotationAssertion(rdfs:label "excision"@en) -AnnotationAssertion( ) AnnotationAssertion( "Alan Ruttenberg, Kevin Clancy"@en) +AnnotationAssertion( "www.crohnsresource.com/glossary.jsp (via google define:resection)"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "excision"@en) SubClassOf( ) + +# Class: (non specific enzymatic cleavage) + +AnnotationAssertion( "non specific enzymatic cleavage"@en) +AnnotationAssertion( "The use of agarase to digest an agar gel"@en) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application to digest the fraction of input material that is susceptible to that enzyme"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "The use of agarase to digest an agar gel"@en) -AnnotationAssertion( ) AnnotationAssertion(rdfs:label "non specific enzymatic cleavage"@en) -AnnotationAssertion( "non specific enzymatic cleavage"@en) -AnnotationAssertion( "a protocol application to digest the fraction of input material that is susceptible to that enzyme"@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) + +# Class: (maintaining cell culture) + AnnotationAssertion( "maintaining cell culture"@en) +AnnotationAssertion( "When harvesting blood from a human, isolating T cells, and then limited dilution cloning of the cells, the maintaining_cell_culture step comprises all steps after the initial dilution and plating of the cells into culture, e.g. placing the culture into an incubator, changing or adding media, and splitting a cell culture"@en) AnnotationAssertion( ) AnnotationAssertion( "a protocol application in which cells are kept alive in a defined environment outside of an organism. part of cell_culturing"@en) -AnnotationAssertion( "When harvesting blood from a human, isolating T cells, and then limited dilution cloning of the cells, the maintaining_cell_culture step comprises all steps after the initial dilution and plating of the cells into culture, e.g. placing the culture into an incubator, changing or adding media, and splitting a cell culture"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "maintaining cell culture"@en) SubClassOf( ) -AnnotationAssertion( "A process in which the mass of a material is measured at two or more time points"@en) -AnnotationAssertion(rdfs:label "longitudinal mass measurement assay"@en) -AnnotationAssertion( "Helen Parkinson"@en) + +# Class: (longitudinal mass measurement assay) + AnnotationAssertion( "longitudinal mass measurement assay"@en) AnnotationAssertion( "The comparison of the weight of vaccinated and non-vaccinated mice after infection with influenza A over 6 weeks post-infection"@en) AnnotationAssertion( ) +AnnotationAssertion( "A process in which the mass of a material is measured at two or more time points"@en) +AnnotationAssertion( "Helen Parkinson"@en) AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "longitudinal mass measurement assay"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "artificially induced cell membrane lysis"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "OBI branch derived"@en) + +# Class: (artificially induced cell membrane lysis) + +AnnotationAssertion( "artificially induced cell membrane lysis"@en) AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Retrieve&db=PubMed&list_uids=16080188&dopt=AbstractPlus; The destruction of cell membranes with detergent."@en) AnnotationAssertion( ) -AnnotationAssertion( "artificially induced cell membrane lysis"@en) AnnotationAssertion( "a material transformation to break the membranes of cells, releasing the cells contents; input=>cells; output=>cell_lysate"@en) AnnotationAssertion( "---\\nThere is a more general 'membrane lysis', which could apply to artificial membranes etc. For this general membrane encapsulated objects would need to be defined."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "artificially induced cell membrane lysis"@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion(rdfs:label "artificially induced reverse transcription"@en) -AnnotationAssertion( "We need to indicate the relationship between the cDNA generated and the RNA that was used as a template. This may be outside of the OBI scope"@en) + +# Class: (artificially induced reverse transcription) + AnnotationAssertion( "artificially induced reverse transcription"@en) AnnotationAssertion( "The use of M-MLV reverse transcriptase from the Moloney murine leukemia virus to transcribe an RNA sample into cDNA"@en) -AnnotationAssertion( "It could also be added that the reverse transcriptase is bearer of a GO:0003964 RNA-directed DNA polymerase activity, which is realized in this process."^^xsd:string) -AnnotationAssertion( "a protocol with the objective to transcribe single-stranded RNA into complementary DNA (cDNA)"@en) AnnotationAssertion( ) +AnnotationAssertion( "a protocol with the objective to transcribe single-stranded RNA into complementary DNA (cDNA)"@en) +AnnotationAssertion( "It could also be added that the reverse transcriptase is bearer of a GO:0003964 RNA-directed DNA polymerase activity, which is realized in this process."^^xsd:string) +AnnotationAssertion( "We need to indicate the relationship between the cDNA generated and the RNA that was used as a template. This may be outside of the OBI scope"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "artificially induced reverse transcription"@en) SubClassOf( ) -AnnotationAssertion( "This does not apply to the case where the cells are lysed"@en) -AnnotationAssertion( ) + +# Class: (isolation of cell culture supernatant) + +AnnotationAssertion( "isolation of cell culture supernatant"@en) +AnnotationAssertion( "Pouring out a portion of the fluid part of an adherant cell culture growing in a flask.; The centrifugation of a T cell culture followed by aspiration of the supernatant while the cellular pellet remains in the centrifuge tube."@en) +AnnotationAssertion( ) AnnotationAssertion( "a protocol which results in the separation of supernatant material from a cell culture"@en) +AnnotationAssertion( "This does not apply to the case where the cells are lysed"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "isolation of cell culture supernatant"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "isolation of cell culture supernatant"@en) -AnnotationAssertion( "Pouring out a portion of the fluid part of an adherant cell culture growing in a flask.; The centrifugation of a T cell culture followed by aspiration of the supernatant while the cellular pellet remains in the centrifuge tube."@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "isolation of cell culture supernatant"@en) SubClassOf( ) -AnnotationAssertion( "could be defined class"@en) -AnnotationAssertion( ) + +# Class: (experimental disease induction) + +AnnotationAssertion( "experimental disease induction"@en) AnnotationAssertion( "the injection of mice with LCM virus iv to establish an LCMV infection. Witholding food from animals to induce starvation syndrome."@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( ) -AnnotationAssertion( "experimental disease induction"@en) AnnotationAssertion( "a protocol application to induce a specific disease in an organism"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "could be defined class"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "experimental disease induction"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "ELISPOT assay"@en) -AnnotationAssertion( "IEDB"@en) -AnnotationAssertion( "Enzyme-linked immunosorbent spot assay"^^xsd:string) -AnnotationAssertion( "Determination of the frequency of cells producing IFN-gamma in response to viral peptides by placing effector cells on a anti IFN-gamma coated plate, and adding antigen presenting cells pulsed with a peptide. After washing, the bound IFN-gamma is detected with a secondary antibody linked to a dye that visualizes as one spot per cell."@en) -AnnotationAssertion( ) -AnnotationAssertion( "ELISPOT"@en) -AnnotationAssertion( "IEDB"@en) -AnnotationAssertion( "2/26/09: RESOLVE: we need to specify the produced substance that is desired to be detected. Analyte does not work, as this is not a concentration, and this is not present at the start of the assay."^^xsd:string) + +# Class: (ELISPOT assay) + AnnotationAssertion( "ELISPOT assay"^^xsd:string) -AnnotationAssertion( "An assay in which the number of cells producing a material in a larger cell population are stained and counted. This is done by visualizing and counting the number of spots present on a surface via an antibody specific for the produced material. Each spot represents one cell producing the material of interest."@en) +AnnotationAssertion( "Determination of the frequency of cells producing IFN-gamma in response to viral peptides by placing effector cells on a anti IFN-gamma coated plate, and adding antigen presenting cells pulsed with a peptide. After washing, the bound IFN-gamma is detected with a secondary antibody linked to a dye that visualizes as one spot per cell."@en) AnnotationAssertion( ) +AnnotationAssertion( "An assay in which the number of cells producing a material in a larger cell population are stained and counted. This is done by visualizing and counting the number of spots present on a surface via an antibody specific for the produced material. Each spot represents one cell producing the material of interest."@en) +AnnotationAssertion( "2/26/09: RESOLVE: we need to specify the produced substance that is desired to be detected. Analyte does not work, as this is not a concentration, and this is not present at the start of the assay."^^xsd:string) +AnnotationAssertion( "IEDB"@en) +AnnotationAssertion( "ELISPOT"@en) +AnnotationAssertion( "Enzyme-linked immunosorbent spot assay"^^xsd:string) +AnnotationAssertion( "IEDB"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "ELISPOT assay"@en) SubClassOf( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "---\\nis this really a protocol?\\n--> This as several other protocol applications is also a natural process. The fact that it is induced experimetnally by following a protocol makes it a protocol application. Need to make sure that labels don't conflict wi"@en) + +# Class: (artificially induced DNA repair) + AnnotationAssertion( "artificially induced DNA repair"@en) -AnnotationAssertion( ) +AnnotationAssertion( "the use of DNA repair enzymes uracil DNA glycosylase and 3-methyladenine DNA glycosylase to repair DNA strands"@en) +AnnotationAssertion( ) AnnotationAssertion( "a protocol application to repair damaged DNA molecules"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "---\\nis this really a protocol?\\n--> This as several other protocol applications is also a natural process. The fact that it is induced experimetnally by following a protocol makes it a protocol application. Need to make sure that labels don't conflict wi"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "artificially induced DNA repair"@en) -AnnotationAssertion( "the use of DNA repair enzymes uracil DNA glycosylase and 3-methyladenine DNA glycosylase to repair DNA strands"@en) -AnnotationAssertion( ) SubClassOf( ) + +# Class: (cell permeabilization) + +AnnotationAssertion( "cell permeabilization"@en) +AnnotationAssertion( "Electroporation of HeLa cells to allow transfection with pUC19."@en) AnnotationAssertion( ) -AnnotationAssertion( ) +AnnotationAssertion( "A protocol application to permeabilize cell membranes, allowing molecules to more easily pass through the membrane than was possible prior to the protocol application"@en) AnnotationAssertion( "need to add output cell has_quality permeable"@en) +AnnotationAssertion( "PERSON:Bjoern Peters"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "Electroporation of HeLa cells to allow transfection with pUC19."@en) -AnnotationAssertion( "A protocol application to permeabilize cell membranes, allowing molecules to more easily pass through the membrane than was possible prior to the protocol application"@en) AnnotationAssertion( "definition blessed by Jay, Alan, Randi"@en) -AnnotationAssertion( "PERSON:Bjoern Peters"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "cell permeabilization"@en) -AnnotationAssertion( "cell permeabilization"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "precipitation"@en) -AnnotationAssertion( ) + +# Class: (precipitation) + AnnotationAssertion( "precipitation"@en) +AnnotationAssertion( "The use of ethanol to precipitate DNA molecules from a solution containing DNA"@en) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application to cause a material to precipitate (becoming a solid) out of solution. Input is a solution, output is a solution plus a solid component (the precipitate)"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "a protocol application to cause a material to precipitate (becoming a solid) out of solution. Input is a solution, output is a solution plus a solid component (the precipitate)"@en) -AnnotationAssertion( "The use of ethanol to precipitate DNA molecules from a solution containing DNA"@en) +AnnotationAssertion(rdfs:label "precipitation"@en) SubClassOf( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "establishing a cell culture is a process which results in creating an in vitro environment in which cells are sustained from input material containing cells. input: cell-containing material, output cell culture, part of cell culturing. Cells are originally plated at a certain concentration referred to as seeding density."@en) -AnnotationAssertion( ) + +# Class: (establishing cell culture) + AnnotationAssertion( "establishing cell culture"@en) -AnnotationAssertion(rdfs:label "establishing cell culture"@en) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) -SubClassOf( ) +AnnotationAssertion( ) +AnnotationAssertion( "establishing a cell culture is a process which results in creating an in vitro environment in which cells are sustained from input material containing cells. input: cell-containing material, output cell culture, part of cell culturing. Cells are originally plated at a certain concentration referred to as seeding density."@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "establishing cell culture"@en) +SubClassOf( ) + +# Class: (cell culture splitting) + AnnotationAssertion( "cell culture splitting"@en) -AnnotationAssertion( ) -AnnotationAssertion( "The act of taking part of a homogeneous cell culture and creating one or more additional separate cultures of similar qualities. input: cell_culture, output cell_culture min cardinality 2. part of cell culturing"@en) AnnotationAssertion( "The act of taking a cell culture of high density, counting the cells, removing part of the cells, and re-seeding a select number of the cells into new flasks with fresh tissue culture media."@en) AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "cell culture splitting"@en) +AnnotationAssertion( "The act of taking part of a homogeneous cell culture and creating one or more additional separate cultures of similar qualities. input: cell_culture, output cell_culture min cardinality 2. part of cell culturing"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "cell culture splitting"@en) SubClassOf( ) + +# Class: (labeling) + +AnnotationAssertion( "labeling"@en) AnnotationAssertion( "The addition of phycoerytherin label to an anti-CD8 antibody, to label all antibodies. The addition of anti-CD8-PE to a population of cells, to label the subpopulation cells that are CD8+."@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "the addition of a labeling reagent to an input biomaterial in order to detect the labeled material in the future"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion( "definition blessed by Allyson, Bjoern, Jay & Randi"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "the addition of a labeling reagent to an input biomaterial in order to detect the labeled material in the future"@en) +AnnotationAssertion( "definition blessed by Allyson, Bjoern, Jay & Randi"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "labeling"@en) -AnnotationAssertion( "labeling"@en) -AnnotationAssertion( ) SubClassOf( ) -AnnotationAssertion( "A planned process of adding methyl groups to polymers"@en) + +# Class: (artificially induced methylation) + AnnotationAssertion( "artificially induced methylation"@en) -AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( "the use of enzymes to add methyl groups to DNA molecules"@en) AnnotationAssertion( ) +AnnotationAssertion( "A planned process of adding methyl groups to polymers"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "the use of enzymes to add methyl groups to DNA molecules"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "artificially induced methylation"@en) SubClassOf( ) -AnnotationAssertion( "This probably needs breaking down into more specific applications. The example given is already covered in reverse_transcription"@en) -AnnotationAssertion(rdfs:label "synthesis"@en) -AnnotationAssertion( ) + +# Class: (synthesis) + +AnnotationAssertion( "synthesis"^^xsd:string) AnnotationAssertion( "making cDNA from nucleotides using RNA as a template"@en) -AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion( "the construction of a biomaterial from simpler biomaterials"@en) +AnnotationAssertion( "This probably needs breaking down into more specific applications. The example given is already covered in reverse_transcription"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "synthesize"@en) -AnnotationAssertion( "the construction of a biomaterial from simpler biomaterials"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "synthesis"^^xsd:string) +AnnotationAssertion(rdfs:label "synthesis"@en) SubClassOf( ) + +# Class: (concentrate) + +AnnotationAssertion( "concentrate"@en) +AnnotationAssertion( "Evaporation of the solution containing DNA to increase the concentration of the DNA molecules"@en) +AnnotationAssertion( ) AnnotationAssertion( "a protocol application to create an output material with an increased density of a material of interest that is part of the input material by separating other parts of the input material"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion( "concentrate"@en) AnnotationAssertion(rdfs:label "concentrate"@en) -AnnotationAssertion( ) -AnnotationAssertion( "Evaporation of the solution containing DNA to increase the concentration of the DNA molecules"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( ) + +# Class: (recombinant plasmid cloning) + +AnnotationAssertion( "recombinant plasmid cloning"@en) AnnotationAssertion( "The DNA fragment encoding the p35 gene from Mycobacterium avium complex was inserted into pcDNAII and expressed in E coli in order to study p35."@en) +AnnotationAssertion( ) AnnotationAssertion( "the insertion of a particular DNA fragment into a plasmid in order to make copies of a biomaterial"@en) -AnnotationAssertion(rdfs:label "recombinant plasmid cloning"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion( "recombinant plasmid cloning"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "recombinant plasmid cloning"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "genetic transformation"@en) + +# Class: (genetic transformation) + AnnotationAssertion( "genetic transformation"@en) +AnnotationAssertion( "The transduction of E. coli through the introduction of a plasmid encoding for M. avium p35"@en) AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "the introduction. alteration or integration of genetic material into a cell or organism"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion( "The transduction of E. coli through the introduction of a plasmid encoding for M. avium p35"@en) AnnotationAssertion( "genetic modification"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "the introduction. alteration or integration of genetic material into a cell or organism"@en) +AnnotationAssertion(rdfs:label "genetic transformation"@en) SubClassOf( ) -AnnotationAssertion( "A protocol application to separate cells and/or cellular secretions from an anatomical space by the introduction and removal of fluid"@en) + +# Class: (lavage) + AnnotationAssertion( "lavage"@en) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "lavage"@en) AnnotationAssertion( "the collection of bronchoalveolar lavage fluid (BAL) from the lungs of mice in order to study the cytokines present"@en) AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "A protocol application to separate cells and/or cellular secretions from an anatomical space by the introduction and removal of fluid"@en) AnnotationAssertion( "This is not washing, in which case the material of interest is not the resulting fluid"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "lavage"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "preparative chromatography"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "the use of a biomaterial's preferential affinity for either the mobile phase or the stationary phase to separate it from other materials of differing affinity"@en) + +# Class: (preparative chromatography) + +AnnotationAssertion( "preparative chromatography"@en) AnnotationAssertion( "The use of gas chromatography in order separate out from an input sample of eggs a fraction that would be enriched for pesticides."@en) -AnnotationAssertion( "PERSON:Kevin Clancy; Bjoern Peters"@en) AnnotationAssertion( ) -AnnotationAssertion( "preparative chromatography"@en) +AnnotationAssertion( "the use of a biomaterial's preferential affinity for either the mobile phase or the stationary phase to separate it from other materials of differing affinity"@en) +AnnotationAssertion( "PERSON:Kevin Clancy; Bjoern Peters"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "preparative chromatography"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "has_output should be sequence of input; we don't have sequence well defined yet"@en) -AnnotationAssertion( "the use of a chemical or biochemical means to infer the sequence of a biomaterial"@en) + +# Class: (sequencing assay) + AnnotationAssertion( "sequencing assay"@en) AnnotationAssertion( "The use of the Sanger method of DNA sequencing to determine the order of the nucleotides in a DNA template"@en) -AnnotationAssertion(rdfs:label "sequencing assay"@en) AnnotationAssertion( ) +AnnotationAssertion( "the use of a chemical or biochemical means to infer the sequence of a biomaterial"@en) +AnnotationAssertion( "has_output should be sequence of input; we don't have sequence well defined yet"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "sequencing assay"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) + +# Class: (vector mediated amplification) + AnnotationAssertion( "vector mediated amplification"^^xsd:string) -AnnotationAssertion( "The process of creating a copy of some biological entity in cell culture"@en) AnnotationAssertion( "E coli expressing the gene for M avium p35 were cultured in order to produce p35."@en) +AnnotationAssertion( ) +AnnotationAssertion( "The process of creating a copy of some biological entity in cell culture"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) AnnotationAssertion(rdfs:label "vector mediated amplification"@en) SubClassOf( ) -AnnotationAssertion(rdfs:label "DNA polymerase amplification"@en) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion( "OBI branch derived"@en) + +# Class: (DNA polymerase amplification) + +AnnotationAssertion( "DNA polymerase amplification"@en) +AnnotationAssertion( "The use of taq polymerase to amplify a DNA fragment during a PCR."@en) +AnnotationAssertion( ) AnnotationAssertion( "DNA polymerase amplification is an enzymatic amplification which uses DNA polymerase enzyme to make copies of a DNA contained in biomaterial used as input"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "Philippe Rocca-Serra"^^xsd:string) -AnnotationAssertion( "The use of taq polymerase to amplify a DNA fragment during a PCR."@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( "DNA polymerase amplification"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "DNA polymerase amplification"@en) SubClassOf( ) + +# Class: (specific enzymatic cleavage) + AnnotationAssertion( "specific enzymatic cleavage"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( "a protocol application to digest the fraction of input material that is susceptible to that enzyme"@en) -AnnotationAssertion( ) AnnotationAssertion( "The use of a protease to digest a protein into peptides"@en) -AnnotationAssertion(rdfs:label "specific enzymatic cleavage"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application to digest the fraction of input material that is susceptible to that enzyme"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "specific enzymatic cleavage"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "gradient separation"@en) + +# Class: (gradient separation) + +AnnotationAssertion( "gradient separation"@en) AnnotationAssertion( "the use of a sucrose gradient to isolate mitochondria"@en) -AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) AnnotationAssertion( "a protocol application that uses different concentrations of materials in a defined order to create a gradient to facilitate the separation of an input material into its components with specific qualities"@en) -AnnotationAssertion( "gradient separation"@en) -AnnotationAssertion( ) AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "gradient separation"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion(rdfs:label "dialysis"@en) + +# Class: (dialysis) + AnnotationAssertion( "dialysis"@en) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion( ) -AnnotationAssertion( "a protocol application that uses diffusion through a semi-permeable membrane to separate an input material into two fractions of different composition"@en) AnnotationAssertion( "the use of a dialysis bag of select pore size to remove salt from collagen isolated from mouse cartilage"@en) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application that uses diffusion through a semi-permeable membrane to separate an input material into two fractions of different composition"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "dialysis"@en) SubClassOf( ) + +# Class: (electrophoresis) + +AnnotationAssertion( "electrophoresis"@en) +AnnotationAssertion( "Loading a mixture of proteins into a polyacrylamide gel and the application of an electrical current to the gel to separate the proteins by size and change."@en) +AnnotationAssertion( ) +AnnotationAssertion( "a protocol application that uses an electrical potential to move material through a defined matrix in order to separate it by its resistance to movement and its charge"@en) AnnotationAssertion( "PERSON:Kevin Clancy"@en) -AnnotationAssertion(rdfs:label "electrophoresis"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( "Need to define more terms like gel_separation, matrix,centrifugation, and the connection between the force used to separate materials and the medium or barriers."@en) -AnnotationAssertion( "a protocol application that uses an electrical potential to move material through a defined matrix in order to separate it by its resistance to movement and its charge"@en) -AnnotationAssertion( "Loading a mixture of proteins into a polyacrylamide gel and the application of an electrical current to the gel to separate the proteins by size and change."@en) AnnotationAssertion( ) -AnnotationAssertion( "electrophoresis"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "electrophoresis"@en) SubClassOf( ) -AnnotationAssertion( "the use of enzymes to cut DNA molecules, the study of DNA through cleavage, mapping, and analysis of the fragments"@en) -AnnotationAssertion( ) + +# Class: (DNA cleavage, restriction analysis) + AnnotationAssertion( "DNA cleavage, restriction analysis"@en) +AnnotationAssertion( "the use of the restriction enzymes SalPI and PstI to cleave DNA into fragments, assay made up of components"@en) AnnotationAssertion( ) +AnnotationAssertion( "the use of enzymes to cut DNA molecules, the study of DNA through cleavage, mapping, and analysis of the fragments"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) AnnotationAssertion( "restriction enzyme assay"@en) -AnnotationAssertion( "the use of the restriction enzymes SalPI and PstI to cleave DNA into fragments, assay made up of components"@en) AnnotationAssertion( "the use of the restriction enzymes SalPI and PstI to cleave DNA into fragments, assay made up of components"@en) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "DNA cleavage, restriction analysis"@en) SubClassOf( ) + +# Class: (protease cleavage) + AnnotationAssertion( "protease cleavage"@en) -AnnotationAssertion( ) AnnotationAssertion( "the use of trypsin to cleave pepsin into peptide fragments"@en) -AnnotationAssertion( "enzymatic digestion"@en) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion(rdfs:label "protease cleavage"@en) +AnnotationAssertion( ) AnnotationAssertion( "protease cleavage is an enzymatic cleavage which relies on enzyme with protease activity to act on proteins and produce polypeptides (protein fragments)."@en) +AnnotationAssertion( "enzymatic digestion"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "protease cleavage"@en) SubClassOf( ) -AnnotationAssertion( "PERSON:Kevin Clancy"@en) + +# Class: (enzymatic amplification) + +AnnotationAssertion( "enzymatic amplification"@en) AnnotationAssertion( "the use of a polymerase chain reaction to amplify a fragment of DNA"@en) -AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "the use of enzymes to increase the number of molecules of a biomaterial"@en) -AnnotationAssertion( "enzymatic amplification"@en) +AnnotationAssertion( "PERSON:Kevin Clancy"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "enzymatic amplification"@en) SubClassOf( ) -AnnotationAssertion( "pa_branch (Alan, Randi, Kevin, Jay, Bjoern)"@en) -AnnotationAssertion( ) -AnnotationAssertion( "molecular cloning"^^xsd:string) + +# Class: (recombinant vector cloning) + AnnotationAssertion( "recombinant vector cloning"@en) +AnnotationAssertion( ) AnnotationAssertion( "a planned process with the objective to insert genetic material into a cloning vector for future replication of the inserted material"@en) +AnnotationAssertion( "pa_branch (Alan, Randi, Kevin, Jay, Bjoern)"@en) +AnnotationAssertion( "molecular cloning"^^xsd:string) AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion( ) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "recombinant vector cloning"@en) SubClassOf( ) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) + +# Class: (RNA extraction) + +AnnotationAssertion( "RNA extraction"@en) AnnotationAssertion( ) -AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) AnnotationAssertion( "A RNA extraction is a nucleic acid extraction where the desired output material is RNA"@en) -AnnotationAssertion(rdfs:label "RNA extraction"@en) -AnnotationAssertion( "RNA extraction"@en) +AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) AnnotationAssertion( "requested by Helen Parkinson for MO"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "RNA extraction"@en) SubClassOf( ) + +# Class: (nucleic acid extraction) + AnnotationAssertion( "nucleic acid extraction"@en) -AnnotationAssertion( "requested by Helen Parkinson for MO. Could be defined class"@en) -AnnotationAssertion( "a material separation to recover the nucleic acid fraction of an input material"@en) -AnnotationAssertion( ) -AnnotationAssertion( "OBI branch derived"@en) -AnnotationAssertion(rdfs:label "nucleic acid extraction"@en) AnnotationAssertion( "Phenol / chlorophorm extraction disolvation of protein content folllowed by ethanol precipitation of the nucleic acid fraction over night in the fridge followed by centrifugation to obtain a nucleic acid pellet."@en) +AnnotationAssertion( ) +AnnotationAssertion( "a material separation to recover the nucleic acid fraction of an input material"@en) AnnotationAssertion( "PlanAndPlannedProcess Branch"@en) +AnnotationAssertion( "OBI branch derived"@en) +AnnotationAssertion( "requested by Helen Parkinson for MO. Could be defined class"@en) AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "nucleic acid extraction"@en) SubClassOf( ) -AnnotationAssertion( "IEDB"@en) -AnnotationAssertion(rdfs:label "immunogen"@en) -AnnotationAssertion( "IEDB"@en) + +# Class: (immunogen) + +AnnotationAssertion( "immunogen"^^xsd:string) AnnotationAssertion( ) -AnnotationAssertion( ) AnnotationAssertion( "a material entity bearing the immunogen role"@en) -AnnotationAssertion( "immunogen"^^xsd:string) +AnnotationAssertion( "IEDB"@en) +AnnotationAssertion( "IEDB"@en) +AnnotationAssertion( ) +AnnotationAssertion(rdfs:label "immunogen"@en) SubClassOf( ) SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (disease (OBI)) + AnnotationAssertion(rdfs:label "disease (OBI)"@en) -AnnotationAssertion( ) + +# Class: (immunogen role) + AnnotationAssertion( "immunogen role"^^xsd:string) -AnnotationAssertion( ) +AnnotationAssertion( ) +AnnotationAssertion( "any entity capable of eliciting an immune response when introduced to components of the immune system"@en) AnnotationAssertion( "IEDB"@en) AnnotationAssertion( "IEDB"@en) -AnnotationAssertion( "any entity capable of eliciting an immune response when introduced to components of the immune system"@en) +AnnotationAssertion( ) AnnotationAssertion(rdfs:label "immunogen role"@en) SubClassOf( ) -AnnotationAssertion( "PERSON: Melanie Coutot"^^xsd:string) -AnnotationAssertion( "PERSON: Larry Hunter"^^xsd:string) -AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) -AnnotationAssertion( "8/17/09: specified inputs of one process are not necessarily specified inputs of a larger process that it is part of. This is in contrast to how 'has participant' works."^^xsd:string) -AnnotationAssertion( "has_specified_input"^^xsd:string) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "A relation between a planned process and a continuant participating in that process that is not created during the process. The presence of the continuant during the process is explicitly specified in the plan specification which the process realizes the concretization of."@en) -AnnotationAssertion(rdfs:label "has_specified_input"@en) -AnnotationAssertion( "see is_input_of example_of_usage"@en) -ObjectPropertyDomain( ) -AnnotationAssertion(rdfs:label "has_specified_output"@en) -AnnotationAssertion( "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en) -AnnotationAssertion( "has_specified_output"^^xsd:string) -AnnotationAssertion( "PERSON: Bjoern Peters"^^xsd:string) -AnnotationAssertion( "PERSON: Melanie Courtot"^^xsd:string) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( "PERSON: Larry Hunter"^^xsd:string) -InverseObjectProperties( ) -ObjectPropertyDomain( ) -ObjectPropertyRange( ObjectUnionOf( )) -AnnotationAssertion( "PERSON:Bjoern Peters"^^xsd:string) -AnnotationAssertion( "A relation between a planned process and a continuant participating in that process. The presence of the continuant at the end of the process is explicitly specified in the objective specification which the process realizes the concretization of."@en) -AnnotationAssertion( "Alan Ruttenberg"@en) -AnnotationAssertion( "is_specified_output_of"^^xsd:string) -AnnotationAssertion(rdfs:label "is_specified_output_of"@en) -ObjectPropertyRange( ) -ObjectPropertyDomain( ) -AnnotationAssertion(rdfs:label "has grain"^^xsd:string) -AnnotationAssertion( "PAPER: Granularity, scale and collectivity: When size does and does not matter, Alan Rector, Jeremy Rogers, Thomas Bittner, Journal of Biomedical Informatics 39 (2006) 333-349"^^xsd:string) -AnnotationAssertion( "has grain"^^xsd:string) -AnnotationAssertion( "the relation of the cells in the finger of the skin to the finger, in which an indeterminate number of grains are parts of the whole by virtue of being grains in a collective that is part of the whole, and in which removing one granular part does not nec- essarily damage or diminish the whole. Ontological Whether there is a fixed, or nearly fixed number of parts - e.g. fingers of the hand, chambers of the heart, or wheels of a car - such that there can be a notion of a single one being missing, or whether, by contrast, the number of parts is indeterminate - e.g., cells in the skin of the hand, red cells in blood, or rubber molecules in the tread of the tire of the wheel of the car."^^xsd:string) -AnnotationAssertion( "Discussion in Karslruhe with, among others, Alan Rector, Stefan Schulz, Marijke Keet, Melanie Courtot, and Alan Ruttenberg. Definition take from the definition of granular parthood in the cited paper. Needs work to put into standard form"@en) -AnnotationAssertion( "PERSON: Alan Ruttenberg"@en) -AnnotationAssertion( ) -SubObjectPropertyOf( ) -ObjectPropertyRange( ) + + ) \ No newline at end of file