diff --git a/src/workflows/run_benchmark/config.vsh.yaml b/src/workflows/run_benchmark/config.vsh.yaml index 5eb01e8..46162d5 100644 --- a/src/workflows/run_benchmark/config.vsh.yaml +++ b/src/workflows/run_benchmark/config.vsh.yaml @@ -47,6 +47,8 @@ resources: - type: nextflow_script path: main.nf entrypoint: run_wf + - type: file + path: /_viash.yaml dependencies: - name: h5ad/extract_uns_metadata repository: core diff --git a/src/workflows/run_benchmark/main.nf b/src/workflows/run_benchmark/main.nf index 5a6437c..71c6e6e 100644 --- a/src/workflows/run_benchmark/main.nf +++ b/src/workflows/run_benchmark/main.nf @@ -173,7 +173,7 @@ workflow run_wf { def metric_configs_file = tempFile("metric_configs.yaml") metric_configs_file.write(metric_configs_yaml_blob) - def task_info_file = meta.resources_dir.resolve("task_info.yaml") + def task_info_file = meta.resources_dir.resolve("_viash.yaml") // store the scores in a file def score_uns = states.collect{it.score_uns}