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Chemistry linksets for 2.2 #398

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ianwdunlop opened this issue Oct 17, 2017 · 1 comment
Open

Chemistry linksets for 2.2 #398

ianwdunlop opened this issue Oct 17, 2017 · 1 comment
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@valt @YVyshnevskyi

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@ianwdunlop
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ianwdunlop commented Oct 17, 2017 •
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  1. In LINKSET_EXACT_WIKIPATHWAYS20170929.ttl are URIs like http://cp1.pharma.openphacts.com/compounds/http_//www.wikidata.org/entity/Q27106176 an actual pattern from wikipathways? If so then need to add it to BridgeDb.

  2. LINKSET_CLOSE_PARENT_CHILD_ISOTOPE_INSENSITIVE_PARENT_WIKIPATHWAYS20170929.ttl does not have any data - this is correct but the IMS doesn't like it.

  3. Should we use "https" or "http" in chemistry.openphacts URIs?

  4. DRUGBUNK in file names needs changed to DRUGBANK.

  5. No surechembl updates.

  6. No MESH or PDB.

  7. https://comptox.epa.gov in LINKSET_EXACT_COMPTOX20170929.ttl needs changed to https://comptox.epa.gov/
@egonw
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egonw commented Oct 25, 2017 •
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@valt, regarding point 1... What is that URI for? It's not an URI from the WikiPathways RDF...

@ianwdunlop, where can I find the VoID header for that linkset LINKSET_EXACT_WIKIPATHWAYS20170929.ttl ?

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