[PRE REVIEW]: MRI-NUFFT: Doing non-Cartesian MRI has never been easier

[editorialbot]

Submitting author: @paquiteau (Pierre-Antoine Comby)
Repository: https://github.com/mind-inria/mri-nufft
Branch with paper.md (empty if default branch):
Version: v1.0.0
Editor: Pending
Reviewers: Pending
Managing EiC: Kevin M. Moerman

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.16 s (737.3 files/s, 212470.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              1              1              1          12196
Python                          91           3081           6801          10522
YAML                             6             82             34            479
reStructuredText                18            313            302            378
TeX                              1              9              0            145
Markdown                         1             33              0            104
TOML                             1             18              3             58
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                           120           3541           7148          23891
-------------------------------------------------------------------------------

Commit count by author:

   279	Pierre-antoine Comby
    57	Pierre-Antoine Comby
    37	Guillaume DAVAL-FREROT
    27	Chaithya G R
    10	chaithyagr
     7	Philippe Ciuciu
     6	Guillaume Daval-Frérot
     6	LenaOudjman
     3	Caini Pan
     3	Daval-G
     3	Matteo Cencini
     2	Maxime Bertrait
     1	Asma TANABENE

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1255

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: BSD 3-Clause "New" or "Revised" License (Valid open source OSI approved license)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1109/TMI.2002.808360 is OK
- 10.1109/tsp.2002.807005 is OK
- 10.1109/TCI.2023.3240081 is OK
- 10.1016/j.ascom.2020.100402 is OK
- 10.5281/zenodo.7982256 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Berkley Advanced Reconstruction Toolbox
- No DOI given, and none found for title: SigPy: A Python Package for High Performance Itera...
- No DOI given, and none found for title: gpuNUFFT - An Open Source GPU Library for 3D Regri...
- No DOI given, and none found for title: TorchKbNufft: A High-Level, Hardware-Agnostic Non-...
- No DOI given, and none found for title: SNAKE-fMRI: A Modular fMRI Simulator from the Spac...
- No DOI given, and none found for title: PySAP-MRI: A Python Package for MR Image Reconstru...

❌ MISSING DOIs

- 10.1109/ipdpsw52791.2021.00105 may be a valid DOI for title: cuFINUFFT: A Load-Balanced GPU Library for General...

❌ INVALID DOIs

- None

[editorialbot]

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

[editorialbot]

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[Kevin-Mattheus-Moerman]

@paquiteau Dear author, thanks for this submission. I am the AEiC on this track and here to help process the initial steps. Before we proceed, please can you have a look at the following points:

• Please study the above reference check ☝️ and see if you can address any of the reported potential DOI issues. You can add/amend DOI entries in your .bib file, and call @editorialbot check references here to check them again.
• Your project appears to lack contributing guidelines at the moment. Please work to add these and to mention/link to them in your README. You could for instance create a CONTRIBUTING.md file (see here for some examples: https://contributing.md/example/).

[Kevin-Mattheus-Moerman]

@paquiteau Just to let you know, we are currently managing a large backlog of submissions and the editors most appropriate for your area are all already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

[paquiteau]

Hi @Kevin-Mattheus-Moerman thanks for starting the review process.

I have added the CONTRIBUTING.md and updated the bib references whenever possible (sadly ISMRM abstracts do not have DOIs, that is one of the reasons we are doing this JOSS submission actually)

For reviewers, I could suggest JeffFessler or guanhuaw (however, I am currently a reviewer for their JOSS submission for MIRTorch: #7340)

Then there is possibly uecker, mathieuboudreau, jonbmartin (also a reviewer of MIRTorch)

[Kevin-Mattheus-Moerman]

@editorialbot check references

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.48550/arXiv.2102.08463 is OK
- 10.5281/zenodo.592960 is OK
- 10.1109/TMI.2002.808360 is OK
- 10.1109/tsp.2002.807005 is OK
- 10.1109/TCI.2023.3240081 is OK
- 10.48550/arXiv.2404.08282 is OK
- 10.1016/j.ascom.2020.100402 is OK
- 10.5281/zenodo.7982256 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: SigPy: A Python Package for High Performance Itera...
- No DOI given, and none found for title: gpuNUFFT - An Open Source GPU Library for 3D Regri...
- No DOI given, and none found for title: TorchKbNufft: A High-Level, Hardware-Agnostic Non-...
- No DOI given, and none found for title: PySAP-MRI: A Python Package for MR Image Reconstru...

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

[Kevin-Mattheus-Moerman]

@paquiteau thanks for making those changes, looks good so.