main.yml

# yamllint disable-file
name: Run Code Checks

on:
  pull_request:
  push:
    # Only run on push to `develop` branch to prevent double execution of
    # all the code checks.
    # Everything should be merged through PRs anyway.
    branches:
      - develop
      - test-ci-*
      - pypi/publish
    paths:
      - '**'
      - '!notebooks/**'
      - '!docs/**'
      - '!old/**'
      - '!README.md'

jobs:
  build-wheels:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2

    - name: Setup Python
      uses: actions/setup-python@v1
      with:
        python-version: 3.8

    - uses: actions/cache@v3
      id: wheels_cache
      with:
        path: ./wheels
        key: wheels-${{ github.sha }}

    - name: Install Dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install --upgrade setuptools
        python -m pip install --upgrade \
         toml \
         wheel \
         packaging \
         twine
        python -m pip freeze

    - name: Build Clean Packages
      run: |
        mkdir -p ./wheels/clean
        ./scripts/build-wheels.sh ./wheels/clean
        find ./wheels/clean -type f

    - name: Patch Package Versions
      run: |
        grep -R --files-with-matches --include '*.py' '__version__ =' \
        | xargs python ./scripts/patch_version.py ${GITHUB_RUN_NUMBER:-0}

    - name: Build Dev Packages
      run: |
        mkdir -p ./wheels/dev
        ./scripts/build-wheels.sh ./wheels/dev
        find ./wheels/dev -type f

  build-test-env-base:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2

    - uses: actions/cache@v3
      id: conda_cache
      with:
        path: |
          tests/env

        key: ${{ runner.os }}-test-env-${{ hashFiles('tests/test-env.yml') }}

    - uses: conda-incubator/setup-miniconda@v2
      if: steps.conda_cache.outputs.cache-hit != 'true'
      with:
        channels: conda-forge,defaults
        channel-priority: true
        activate-environment: ""
          # mamba-version: "*"
        use-mamba: true
        miniforge-variant: Mambaforge

    - name: Dump Conda Environment Info
      shell: bash -l {0}
      if: steps.conda_cache.outputs.cache-hit != 'true'
      run: |
          conda info
          conda list
          mamba -V
          conda config --show-sources
          conda config --show
          printenv | sort

    - name: Build Python Environment for Testing
      shell: bash -l {0}
      if: steps.conda_cache.outputs.cache-hit != 'true'
      run: |
        mamba env create -f tests/test-env.yml -p tests/env

    - name: Check Python Env
      shell: bash -l {0}
      if: steps.conda_cache.outputs.cache-hit != 'true'
      run: |
        mamba env export -p tests/env


  test-with-coverage:
    runs-on: ubuntu-latest

    needs:
      - build-test-env-base

    steps:
    - uses: actions/checkout@v2

    - name: Get Conda Environment from Cache
      uses: actions/cache@v3
      id: conda_cache
      with:
        path: |
          tests/env

        key: ${{ runner.os }}-test-env-${{ hashFiles('tests/test-env.yml') }}

    - name: Update PATH
      shell: bash
      run: |
        echo "$(pwd)/tests/env/bin" >> $GITHUB_PATH
        export PATH="$(pwd)/tests/env/bin"

    - name: Install in Edit mode
      shell: bash
      run: |
        which python
        which createdb
        which datacube

        ./scripts/dev-install.sh --no-deps

    - name: Start Test DB
      shell: bash
      run: |
        echo "Launching test db"
        pgdata=$(pwd)/.dbdata
        initdb -D ${pgdata} --auth-host=md5 --encoding=UTF8
        pg_ctl -D ${pgdata} -l "${pgdata}/pg.log" start
        createdb datacube
        datacube system init
        pip list --format=freeze

      env:
        DATACUBE_DB_URL: postgresql:///datacube

    - name: Run Tests
      shell: bash
      run: |
        datacube system check
        datacube metadata add "https://raw.githubusercontent.com/GeoscienceAustralia/dea-config/master/product_metadata/eo3_sentinel_ard.odc-type.yaml"

        echo "Running Tests"
        pytest --cov=. \
        --cov-report=html \
        --cov-report=xml:coverage.xml \
        --timeout=30 \
        libs apps

      env:
        AWS_DEFAULT_REGION: us-west-2
        DASK_TEMPORARY_DIRECTORY: /tmp/dask
        DATACUBE_DB_URL: postgresql:///datacube

    - name: Upload Coverage
      if: |
        github.repository == 'opendatacube/odc-tools'

      uses: codecov/codecov-action@v1
      with:
        fail_ci_if_error: false
        verbose: false


  test-wheels:
    runs-on: ubuntu-latest

    needs:
      - build-test-env-base
      - build-wheels

    steps:
    - uses: actions/checkout@v2

    - name: Get Wheels from Cache
      uses: actions/cache@v3
      id: wheels_cache
      with:
        path: ./wheels
        key: wheels-${{ github.sha }}

    - name: Get Conda Environment from Cache
      uses: actions/cache@v3
      id: conda_cache
      with:
        path: |
          tests/env

        key: ${{ runner.os }}-test-env-${{ hashFiles('tests/test-env.yml') }}

    - name: Update PATH
      shell: bash
      run: |
        echo "$(pwd)/tests/env/bin" >> $GITHUB_PATH

    - name: Install wheels for testing
      shell: bash
      run: |
        which python
        which createdb
        which datacube

        ls -lh wheels/clean
        python -m pip install --no-deps wheels/clean/*whl
        python -m pip check || true

    - name: Start Test DB
      shell: bash
      run: |
        echo "Launching test db"
        pgdata=$(pwd)/.dbdata
        initdb -D ${pgdata} --auth-host=md5 --encoding=UTF8
        pg_ctl -D ${pgdata} -l "${pgdata}/pg.log" start
        createdb datacube
        datacube system init

      env:
        DATACUBE_DB_URL: postgresql:///datacube

    - name: Run Tests
      shell: bash
      run: |
        datacube system check
        datacube metadata add "https://raw.githubusercontent.com/GeoscienceAustralia/dea-config/master/product_metadata/eo3_sentinel_ard.odc-type.yaml"

        echo "Running Tests"
        pytest --timeout=30 libs apps

      env:
        AWS_DEFAULT_REGION: us-west-2
        DASK_TEMPORARY_DIRECTORY: /tmp/dask
        DATACUBE_DB_URL: postgresql:///datacube

  publish-pypi:
    if: |
        github.event_name == 'push'
        && github.repository == 'opendatacube/odc-tools'
        && (github.ref == 'refs/heads/stable' || github.ref == 'refs/heads/pypi/publish')

    strategy:
      matrix:
        pkg:
        - odc-algo
        - odc-cloud
        - odc-io
        - odc-ui
        - odc-apps-cloud
        - odc-apps-dc-tools

    needs:
      - build-wheels
      - test-wheels

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2

    - name: Config
      if: |
        github.event_name == 'push'
        && github.repository == 'opendatacube/odc-tools'
        && (github.ref == 'refs/heads/stable' || github.ref == 'refs/heads/pypi/publish')
      id: cfg
      env:
        PKG: ${{ matrix.pkg }}
      run: |
        tk="pypi_token_${PKG//-/_}"
        echo "tk=${tk}" >> $GITHUB_OUTPUT
        echo "publish=yes" >> $GITHUB_OUTPUT

    - name: Setup Python
      if: steps.cfg.outputs.publish == 'yes'
      uses: actions/setup-python@v1
      with:
        python-version: 3.8

    - name: Install Twine
      if: steps.cfg.outputs.publish == 'yes'
      run: |
        python -m pip install --upgrade pip
        python -m pip install --upgrade setuptools
        python -m pip install --upgrade \
         toml \
         wheel \
         twine
        python -m pip freeze
    - uses: actions/cache@v3
      id: wheels_cache
      if: steps.cfg.outputs.publish == 'yes'
      with:
        path: ./wheels
        key: wheels-${{ github.sha }}

    - name: Prepare for upload
      if: steps.cfg.outputs.publish == 'yes'
      run: |
        mkdir -p ./pips
        ./scripts/mk-pip-tree.sh ./wheels/clean ./pips
        find ./pips -type f
    - name: Upload to PyPI
      if: steps.cfg.outputs.publish == 'yes'
      env:
        TWINE_PASSWORD: ${{ secrets[ steps.cfg.outputs.tk ] }}
        TWINE_USERNAME: __token__
        PKG: ${{ matrix.pkg }}

      run: |
        ls pips/${PKG}
        twine upload --non-interactive --skip-existing pips/${PKG}/*