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#652[Feature request] Provide compartments as objects #696

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wants to merge 22 commits into from
Closed

#652[Feature request] Provide compartments as objects #696

wants to merge 22 commits into from

Commits on Apr 12, 2018

  1. Added class compartment

    s9magrei committed Apr 12, 2018
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Commits on Apr 13, 2018

  1. Modified cobra.model for cobra.model.compartments

    @MaxGreil
    MaxGreil committed Apr 13, 2018
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Commits on Apr 14, 2018

  1. Modified cobra.model add_metabolites function for compartments

    @MaxGreil
    MaxGreil committed Apr 14, 2018
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Commits on Apr 15, 2018

  1. Modified json and yml for new class model.compartments

    @MaxGreil
    MaxGreil committed Apr 15, 2018
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  2. Modified sbml and sbml3 plus test_model for new model.compartments

    @MaxGreil
    MaxGreil committed Apr 15, 2018
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  3. Refreshed files with update_pickels, modified model, sbml3, mat

    @MaxGreil
    MaxGreil committed Apr 15, 2018
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Commits on Apr 18, 2018

  1. fixed some errors for new class compartment in tests

    @MaxGreil
    MaxGreil committed Apr 18, 2018
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  2. fixed mini.json

    @MaxGreil
    MaxGreil committed Apr 18, 2018
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  3. fixed pep8

    @MaxGreil
    MaxGreil committed Apr 18, 2018
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Commits on Apr 19, 2018

  1. fixed errors in test_util.py

    @MaxGreil
    MaxGreil committed Apr 19, 2018
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Commits on Apr 20, 2018

  1. fixed errors in test_io.py

    @MaxGreil
    MaxGreil committed Apr 20, 2018
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Commits on Apr 21, 2018

  1. Test fix for test_io.py

    @MaxGreil
    MaxGreil committed Apr 21, 2018
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  2. Next try

    @MaxGreil
    MaxGreil committed Apr 21, 2018
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  3. Test with latin1

    @MaxGreil
    MaxGreil committed Apr 21, 2018
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Commits on Apr 25, 2018

  1. Merge branch 'devel' into Compartments

    @MaxGreil
    MaxGreil authored Apr 25, 2018
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Commits on Apr 28, 2018

  1. some of the requested changes

    @MaxGreil
    MaxGreil committed Apr 28, 2018
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  2. deleted files

    @MaxGreil
    MaxGreil committed Apr 28, 2018
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  3. utf-8 encoding

    @MaxGreil
    MaxGreil committed Apr 28, 2018
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Commits on Apr 29, 2018

  1. Merge branch 'devel' of git://github.com/opencobra/cobrapy into Compa… 

    …rtments
    @MaxGreil
    MaxGreil committed Apr 29, 2018
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  2. Property compartments

    @MaxGreil
    MaxGreil committed Apr 29, 2018
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  3. Setter for compartments

    @MaxGreil
    MaxGreil committed Apr 29, 2018
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Commits on May 3, 2018

  1. Run update.py for new property compartments

    @MaxGreil
    MaxGreil committed May 3, 2018
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