Check Junit. Hadoop all Short Medium tests. #114
Workflow file for this run
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| name: Check junits | |
| run-name: "Check Junit. Hadoop ${{ inputs.hadoop }} ${{ inputs.module == 'all' && ' ' || format(':{0}. ', inputs.module ) }}${{ inputs.short_tests && 'Short ' || '' }}${{ inputs.medium_tests && 'Medium ' || '' }}${{ inputs.long_tests && 'Long ' || '' }}${{ ! ( inputs.short_tests || inputs.medium_tests || inputs.long_tests ) && 'Short Medium Long ' || '' }}tests." | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| hadoop: | |
| type: choice | |
| description: 'Hadoop flavour.' | |
| required: false | |
| default: "hdp3.1" | |
| options: | |
| - "all" | |
| - "hdp3.1" | |
| - "hdi5.1" | |
| - "emr6.1" | |
| - "emr6.13" | |
| module: | |
| type: choice | |
| description: 'OpenCGA module to test.' | |
| required: false | |
| default: "all" | |
| options: | |
| - "all" | |
| - "opencga-analysis" | |
| - "opencga-app" | |
| - "opencga-catalog" | |
| - "opencga-client" | |
| - "opencga-core" | |
| - "opencga-master" | |
| - "opencga-server" | |
| - "opencga-storage" | |
| - "opencga-test" | |
| short_tests: | |
| type: boolean | |
| required: false | |
| default: true | |
| medium_tests: | |
| type: boolean | |
| required: false | |
| default: false | |
| long_tests: | |
| type: boolean | |
| required: false | |
| default: false | |
| mvn_opts: | |
| type: string | |
| required: false | |
| default: "" | |
| jobs: | |
| get_profiles: | |
| name: Test JUnit | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| profiles: ${{ steps.validate.outputs.profiles }} | |
| modules: ${{ steps.validate.outputs.modules }} | |
| hadoop: ${{ steps.validate.outputs.hadoop }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: '10' | |
| - name: Building string profiles to run | |
| id: validate | |
| run: | | |
| if [ -f "./.github/workflows/scripts/get_profiles.sh" ]; then | |
| chmod +x ./.github/workflows/scripts/get_profiles.sh | |
| profiles=$(./.github/workflows/scripts/get_profiles.sh ${{ inputs.short_tests }} ${{ inputs.medium_tests }} ${{ inputs.long_tests }}) | |
| modules='["${{ inputs.module }}"]' | |
| hadoop='["${{ inputs.hadoop }}"]' | |
| if [ "${{ inputs.hadoop }}" == "all" ]; then | |
| hadoop='["hdp3.1", "hdi5.1", "emr6.1", "emr6.13"]' | |
| elif [ "${{ inputs.module }}" == "all" ]; then | |
| # Only execute modules with matrix strategy if we are testing one single hadoop profile | |
| modules='["opencga-analysis", "opencga-app", "opencga-catalog", "opencga-client", "opencga-core", "opencga-master", "opencga-server", "opencga-storage", "opencga-test"]' | |
| fi | |
| echo "profiles=[\"$profiles\"]" >> $GITHUB_OUTPUT | |
| echo "modules=$modules" >> $GITHUB_OUTPUT | |
| echo "hadoop=$hadoop" >> $GITHUB_OUTPUT | |
| echo "Executing testing profiles -> $profiles" >> $GITHUB_STEP_SUMMARY | |
| echo "Modules -> $modules" >> $GITHUB_STEP_SUMMARY | |
| echo "Hadoop -> $hadoop" >> $GITHUB_STEP_SUMMARY | |
| #echo "matrix={\"hadoop\": $hadoop, \"modules\": $modules}" >> $GITHUB_OUTPUT | |
| fi | |
| test: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| hadoop: ${{ fromJson(needs.get_profiles.outputs.hadoop) }} | |
| module: ${{ fromJson(needs.get_profiles.outputs.modules) }} | |
| profile: ${{ fromJson(needs.get_profiles.outputs.profiles) }} | |
| needs: [ get_profiles ] | |
| uses: ./.github/workflows/test-analysis.yml | |
| with: | |
| test_profile: ${{ matrix.profile }} | |
| hadoop: ${{ matrix.hadoop }} | |
| module: ${{ matrix.module }} | |
| mvn_opts: ${{ inputs.mvn_opts }} | |
| sonar: false | |
| secrets: inherit |