diff --git a/examples/chamber.ipynb b/examples/chamber.ipynb
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+++ b/examples/chamber.ipynb
@@ -0,0 +1,3807 @@
+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "id": "7968866b-24b8-4ed6-bc13-6035310cb4f5",
+ "metadata": {},
+ "source": [
+ "[](https://github.com/open-atmos/PyPartMC/blob/main/examples/chamber.ipynb) \n",
+ "[](https://colab.research.google.com/github/open-atmos/PyPartMC/blob/main/examples/chamber.ipynb) \n",
+ "[](https://mybinder.org/v2/gh/open-atmos/PyPartMC.git/main?urlpath=lab/tree/examples/chamber.ipynb) \n",
+ "[](https://jupyterhub.arm.gov/hub/user-redirect/git-pull?repo=https%3A//github.com/open-atmos/PyPartMC&branch=main&urlPath=) (requires [logging in with ARM account](https://www.arm.gov/capabilities/computing-resources) and directing Jupyter to a notebook within the cloned repo)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "id": "159edeb4",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "# This file is a part of PyPartMC licensed under the GNU General Public License v3\n",
+ "# Copyright (C) 2023 University of Illinois Urbana-Champaign\n",
+ "# Authors:\n",
+ "# - https://github.com/compdyn/partmc/graphs/contributors\n",
+ "# - https://github.com/open-atmos/PyPartMC/graphs/contributors"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "id": "4f8359c2",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import sys\n",
+ "import os\n",
+ "if 'google.colab' in sys.modules:\n",
+ " !pip --quiet install open-atmos-jupyter-utils\n",
+ " from open_atmos_jupyter_utils import pip_install_on_colab\n",
+ " pip_install_on_colab('PyPartMC')\n",
+ "elif 'JUPYTER_IMAGE' in os.environ and '.arm.gov' in os.environ['JUPYTER_IMAGE']:\n",
+ " !pip --quiet install PyPartMC open_atmos_jupyter_utils\n",
+ " _pypartmc_path = !pip show PyPartMC | fgrep Location | cut -f2 -d' '\n",
+ " sys.path.extend(_pypartmc_path if _pypartmc_path[0] not in sys.path else [])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "id": "b494ea6e",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import numpy as np\n",
+ "import matplotlib.pyplot as plt\n",
+ "from open_atmos_jupyter_utils import show_plot\n",
+ "import PyPartMC as ppmc\n",
+ "from PyPartMC import si"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
+ "id": "aa2c0567-2b75-47ba-bf6d-d5a0c22b5b83",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "/home/user/devel/PyPartMC/PyPartMC/examples\n"
+ ]
+ }
+ ],
+ "source": []
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "id": "df8d1a84",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "gas_data = ppmc.GasData((\"H2SO4\",\"HNO3\",\"HCl\",\"NH3\",\"NO\",\"NO2\", \"NO3\",\n",
+ " \"N2O5\", \"HONO\", \"HNO4\", \"O3\", \"O1D\", \"O3P\", \"OH\",\n",
+ " \"HO2\", \"H2O2\", \"CO\", \"SO2\", \"CH4\", \"C2H6\", \"CH3O2\", \n",
+ " \"ETHP\", \"HCHO\", \"CH3OH\", \"ANOL\", \"CH3OOH\", \"ETHOOH\",\n",
+ " \"ALD2\", \"HCOOH\", \"RCOOH\", \"C2O3\", \"PAN\", \"ARO1\", \"ARO2\",\n",
+ " \"ALK1\", \"OLE1\", \"API1\", \"API2\", \"LIM1\", \"LIM2\", \"PAR\", \"AONE\",\n",
+ " \"MGLY\", \"ETH\", \"OLET\", \"OLEI\", \"TOL\", \"XYL\", \"CRES\", \"TO2\",\n",
+ " \"CRO\", \"OPEN\", \"ONIT\", \"ROOH\", \"RO2\", \"ANO2\", \"NAP\", \"XO2\",\n",
+ " \"XPAR\", \"ISOP\", \"ISOPRD\", \"ISOPP\", \"ISOPN\", \"ISOPO2\", \"API\",\n",
+ " \"LIM\", \"DMS\", \"MSA\", \"DMSO\", \"DMSO2\", \"CH3SO2H\", \"CH3SCH2OO\", \n",
+ " \"CH3SO2\", \"CH3SO3\", \"CH3SO2OO\", \"CH3SO2CH2OO\", \"SULFHOX\"\n",
+ " ))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "id": "a2d7bad8",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "env_state = ppmc.EnvState(\n",
+ " {\n",
+ " \"rel_humidity\": 0.00,\n",
+ " \"latitude\": 0,\n",
+ " \"longitude\": 0,\n",
+ " \"altitude\": 0 * si.m,\n",
+ " \"start_time\": 21600 * si.s,\n",
+ " \"start_day\": 200,\n",
+ " }\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "id": "815283a0",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "aero_data = ppmc.AeroData(\n",
+ " (\n",
+ " # density ions in soln (1) molecular weight kappa (1)\n",
+ " # | | | |\n",
+ " {\"SO4\": [1760 * si.kg / si.m**3, 1, 96.0 * si.g / si.mol, 0.00]},\n",
+ " {\"NO3\": [1800 * si.kg / si.m**3, 1, 62.0 * si.g / si.mol, 0.00]},\n",
+ " {\"Cl\": [2200 * si.kg / si.m**3, 1, 35.5 * si.g / si.mol, 0.00]},\n",
+ " {\"NH4\": [1760 * si.kg / si.m**3, 1, 18.0 * si.g / si.mol, 0.00]},\n",
+ " {\"MSA\": [1800 * si.kg / si.m**3, 0, 95.0 * si.g / si.mol, 0.53]},\n",
+ " {\"ARO1\": [1400 * si.kg / si.m**3, 0, 150.0 * si.g / si.mol, 0.10]},\n",
+ " {\"ARO2\": [1400 * si.kg / si.m**3, 0, 150.0 * si.g / si.mol, 0.10]},\n",
+ " {\"ALK1\": [1400 * si.kg / si.m**3, 0, 140.0 * si.g / si.mol, 0.10]},\n",
+ " {\"OLE1\": [1400 * si.kg / si.m**3, 0, 140.0 * si.g / si.mol, 0.10]},\n",
+ " {\"API1\": [1400 * si.kg / si.m**3, 0, 184.0 * si.g / si.mol, 0.10]},\n",
+ " {\"API2\": [1400 * si.kg / si.m**3, 0, 184.0 * si.g / si.mol, 0.10]},\n",
+ " {\"LIM1\": [1400 * si.kg / si.m**3, 0, 200.0 * si.g / si.mol, 0.10]},\n",
+ " {\"LIM2\": [1400 * si.kg / si.m**3, 0, 200.0 * si.g / si.mol, 0.10]},\n",
+ " {\"CO3\": [2600 * si.kg / si.m**3, 1, 60.0 * si.g / si.mol, 0.00]},\n",
+ " {\"Na\": [2200 * si.kg / si.m**3, 1, 23.0 * si.g / si.mol, 0.00]},\n",
+ " {\"Ca\": [2600 * si.kg / si.m**3, 1, 40.0 * si.g / si.mol, 0.00]},\n",
+ " {\"OIN\": [2600 * si.kg / si.m**3, 0, 1.0 * si.g / si.mol, 0.10]},\n",
+ " {\"OC\": [1566 * si.kg / si.m**3, 0, 1.0 * si.g / si.mol, 0.001]},\n",
+ " {\"BC\": [1700 * si.kg / si.m**3, 0, 1.0 * si.g / si.mol, 0.00]},\n",
+ " {\"H2O\": [1000 * si.kg / si.m**3, 0, 18.0 * si.g / si.mol, 0.00]},\n",
+ " )\n",
+ ")\n",
+ "\n",
+ "aero_data.frac_dim = 2.3\n",
+ "aero_data.vol_fill_factor = 1.43\n",
+ "aero_data.prime_radius = 4.5e-8"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "id": "c822823d",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "gas_state = ppmc.GasState(gas_data)\n",
+ "\n",
+ "input_gas_state = (\n",
+ " {\"NO\": [0.1E+00]},\n",
+ ")\n",
+ "\n",
+ "gas_state.mix_rats = input_gas_state"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "id": "58706963",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "times = [0 * si.s]\n",
+ "back_gas = [{\"time\": times},\n",
+ " {\"rate\": [0 / si.s]},\n",
+ " {\"NO\": [0.1E+00]},\n",
+ " ]\n",
+ "\n",
+ "gas_emit_times = [0]\n",
+ "gas_emit_rates = np.zeros(len(gas_emit_times))\n",
+ "SO2 = [4.234E-09]\n",
+ "\n",
+ "emit_gas = [\n",
+ " {\"time\": gas_emit_times},\n",
+ " {\"rate\": list(gas_emit_rates)},\n",
+ " {\"SO2\": SO2},\n",
+ "]\n",
+ "\n",
+ "AERO_DIST_BACKGROUND = {\n",
+ " \"back_small\": {\n",
+ " \"mass_frac\": [{\"SO4\": [1]}, {\"OC\": [1.375]}, {\"NH4\": [0.375]}],\n",
+ " \"diam_type\": \"geometric\",\n",
+ " \"mode_type\": \"log_normal\",\n",
+ " \"num_conc\": 0 / si.m**3,\n",
+ " \"geom_mean_diam\": 0.02 * si.um,\n",
+ " \"log10_geom_std_dev\": 0.161,\n",
+ " },\n",
+ "}\n",
+ "\n",
+ "AERO_DIST_EMIT = {\n",
+ " \"gasoline\": {\n",
+ " \"mass_frac\": [{\"OC\": [0.8]}, {\"BC\": [0.2]}],\n",
+ " \"diam_type\": \"geometric\",\n",
+ " \"mode_type\": \"log_normal\",\n",
+ " \"num_conc\": 0 / si.m**3,\n",
+ " \"geom_mean_diam\": 5e-8 * si.m,\n",
+ " \"log10_geom_std_dev\": 0.24,\n",
+ " },\n",
+ "}"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
+ "id": "c6a96b7d",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "time_timeseries = [0]\n",
+ "pressure_timeseries = list(np.ones(1) * 1e5)\n",
+ "temp_timeseries = [293.4]\n",
+ "height_timeseries = [1000]"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 10,
+ "id": "920e41e3",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "scenario = ppmc.Scenario(\n",
+ " gas_data,\n",
+ " aero_data,\n",
+ " {\n",
+ " \"temp_profile\": [{\"time\": time_timeseries}, {\"temp\": temp_timeseries}],\n",
+ " \"pressure_profile\": [\n",
+ " {\"time\": time_timeseries},\n",
+ " {\"pressure\": pressure_timeseries},\n",
+ " ],\n",
+ " \"height_profile\": [{\"time\": time_timeseries}, {\"height\": height_timeseries}],\n",
+ " \"gas_emissions\": emit_gas,\n",
+ " \"gas_background\": back_gas,\n",
+ " \"aero_emissions\": [\n",
+ " {\"time\": [0 * si.s]},\n",
+ " {\"rate\": [0 / si.s]},\n",
+ " {\"dist\": [[AERO_DIST_EMIT]]},\n",
+ " ],\n",
+ " \"aero_background\": [\n",
+ " {\"time\": [0 * si.s]},\n",
+ " {\"rate\": [2.293e-5 / si.s]},\n",
+ " {\"dist\": [[AERO_DIST_BACKGROUND]]},\n",
+ " ],\n",
+ " \"loss_function\": \"chamber\",\n",
+ " \"chamber_vol\": 0.2093,\n",
+ " \"area_diffuse\": 1.988,\n",
+ " \"area_sedi\": 0.2463,\n",
+ " \"prefactor_BL\": 0.06,\n",
+ " \"exponent_BL\": 0.26,\n",
+ " },\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 11,
+ "id": "6722ba83",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "T_INITIAL = 0.0\n",
+ "scenario.init_env_state(env_state, T_INITIAL)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
+ "id": "9781ca2f",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "diams = [1.33567e-08, 1.38477e-08, 1.43478e-08, 1.48479e-08, 1.53971e-08,\n",
+ " 1.59972e-08, 1.65481e-08, 1.71464e-08, 1.77975e-08, 1.84467e-08,\n",
+ " 1.91468e-08, 1.98469e-08, 2.05470e-08, 2.12962e-08, 2.20964e-08,\n",
+ " 2.28965e-08, 2.36966e-08, 2.45459e-08, 2.54460e-08, 2.63953e-08,\n",
+ " 2.73954e-08, 2.83956e-08, 2.94449e-08, 3.05450e-08, 3.16452e-08,\n",
+ " 3.27945e-08, 3.39947e-08, 3.52440e-08, 3.65442e-08, 3.78444e-08,\n",
+ " 3.92428e-08, 4.06940e-08, 4.21433e-08, 4.36927e-08, 4.52929e-08,\n",
+ " 4.69423e-08, 4.86917e-08, 5.04920e-08, 5.23414e-08, 5.42417e-08,\n",
+ " 5.62402e-08, 5.83406e-08, 6.04409e-08, 6.26394e-08, 6.49398e-08,\n",
+ " 6.72893e-08, 6.97388e-08, 7.23374e-08, 7.50379e-08, 7.77383e-08,\n",
+ " 8.05369e-08, 8.35356e-08, 8.66361e-08, 8.97857e-08, 9.30354e-08,\n",
+ " 9.64341e-08, 9.99838e-08, 1.03633e-07, 1.07432e-07, 1.11382e-07,\n",
+ " 1.15481e-07, 1.19731e-07, 1.24080e-07, 1.28629e-07, 1.33378e-07,\n",
+ " 1.38228e-07, 1.43276e-07, 1.48526e-07, 1.53975e-07, 1.59625e-07,\n",
+ " 1.65473e-07, 1.71572e-07, 1.77871e-07, 1.84370e-07, 1.91119e-07,\n",
+ " 1.98118e-07, 2.05367e-07, 2.12866e-07, 2.20664e-07, 2.28763e-07,\n",
+ " 2.37112e-07, 2.45810e-07, 2.54858e-07, 2.64207e-07, 2.73856e-07,\n",
+ " 2.83854e-07, 2.94252e-07, 3.05050e-07, 3.16249e-07, 3.27847e-07,\n",
+ " 3.39845e-07, 3.52293e-07, 3.65191e-07, 3.78539e-07, 3.92387e-07,\n",
+ " 4.06784e-07, 4.21732e-07, 4.37180e-07, 4.53177e-07, 4.69774e-07,\n",
+ " 4.86971e-07, 5.04818e-07, 5.23316e-07, 5.42462e-07, 5.62309e-07,\n",
+ " 5.82905e-07, 6.04302e-07, 6.26449e-07, 6.49395e-07, 6.73191e-07,\n",
+ " 6.97837e-07, 7.23383e-07, 7.49878e-07, 7.77374e-07, 8.05870e-07,\n",
+ " 8.35396e-07]\n",
+ "\n",
+ "concs = [1.03e+07, 1.04e+07, 4.39e+06, 4.44e+06, 8.03e+06, 7.53e+06,\n",
+ " 3.77e+06, 9.10e+06, 9.77e+06, 1.32e+07, 1.54e+07, 2.26e+07,\n",
+ " 2.14e+07, 3.20e+07, 2.68e+07, 3.36e+07, 4.62e+07, 6.90e+07,\n",
+ " 8.63e+07, 9.12e+07, 1.11e+08, 1.50e+08, 1.57e+08, 1.96e+08,\n",
+ " 2.44e+08, 2.83e+08, 3.48e+08, 3.99e+08, 4.47e+08, 5.42e+08,\n",
+ " 5.91e+08, 6.37e+08, 7.77e+08, 8.68e+08, 9.50e+08, 1.13e+09,\n",
+ " 1.25e+09, 1.36e+09, 1.47e+09, 1.66e+09, 1.90e+09, 1.94e+09,\n",
+ " 2.14e+09, 2.38e+09, 2.40e+09, 2.58e+09, 2.81e+09, 2.87e+09,\n",
+ " 2.96e+09, 3.13e+09, 3.27e+09, 3.53e+09, 3.51e+09, 3.60e+09,\n",
+ " 3.81e+09, 3.90e+09, 3.87e+09, 3.89e+09, 3.91e+09, 3.94e+09,\n",
+ " 3.94e+09, 3.76e+09, 3.76e+09, 3.74e+09, 3.53e+09, 3.38e+09,\n",
+ " 3.34e+09, 3.19e+09, 3.00e+09, 2.81e+09, 2.56e+09, 2.42e+09,\n",
+ " 2.18e+09, 1.96e+09, 1.74e+09, 1.52e+09, 1.36e+09, 1.15e+09,\n",
+ " 9.86e+08, 8.00e+08, 6.91e+08, 5.82e+08, 4.58e+08, 3.65e+08,\n",
+ " 2.80e+08, 2.08e+08, 1.64e+08, 1.25e+08, 8.43e+07, 6.77e+07,\n",
+ " 6.23e+07, 3.54e+07, 3.59e+07, 3.04e+07, 1.90e+07, 1.31e+07,\n",
+ " 1.23e+07, 1.26e+07, 9.70e+06, 1.12e+07, 1.25e+07, 6.67e+06,\n",
+ " 8.67e+06, 8.51e+06, 6.23e+06, 5.12e+06, 5.63e+06, 5.36e+06,\n",
+ " 4.29e+06, 5.55e+06, 4.83e+06, 4.47e+06, 2.90e+06, 2.11e+06,\n",
+ " 3.86e+06]\n",
+ "\n",
+ "AERO_DIST_INIT = [\n",
+ " {\n",
+ " \"test_mode\": {\n",
+ " \"mass_frac\": [{\"SO4\": [96]}, {\"NH4\": [36]}],\n",
+ " \"diam_type\": \"geometric\",\n",
+ " \"mode_type\": \"sampled\",\n",
+ " \"size_dist\": [\n",
+ " {\"diam\": diams},\n",
+ " {\"num_conc\": concs},\n",
+ " ],\n",
+ " }\n",
+ " }\n",
+ "]\n",
+ "\n",
+ "aero_dist_init = ppmc.AeroDist(aero_data, AERO_DIST_INIT)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 13,
+ "id": "d8d9c8fd",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "33597"
+ ]
+ },
+ "execution_count": 13,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "run_part_opt = ppmc.RunPartOpt(\n",
+ " {\n",
+ " \"output_prefix\": \"urban_plume\",\n",
+ " \"do_coagulation\": True,\n",
+ " \"coag_kernel\": \"brown\",\n",
+ " \"t_max\": 20160 * si.s,\n",
+ " \"del_t\": 60 * si.s,\n",
+ " }\n",
+ ")\n",
+ "\n",
+ "N_PART = 100000\n",
+ "aero_state = ppmc.AeroState(aero_data, N_PART, 'nummass_source')\n",
+ "aero_state.dist_sample(\n",
+ " aero_dist_init,\n",
+ " sample_prop=1.0,\n",
+ " create_time=0.0,\n",
+ " allow_doubling=True,\n",
+ " allow_halving=True,\n",
+ ")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 14,
+ "id": "5c8aef2b",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "camp_core = ppmc.CampCore()\n",
+ "photolysis = ppmc.Photolysis()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 15,
+ "id": "0f7c29fe",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "N_STEPS = int(run_part_opt.t_max / run_part_opt.del_t)\n",
+ "num_conc = np.zeros(N_STEPS + 1)\n",
+ "num_conc[0] = aero_state.total_num_conc\n",
+ "mass_conc = np.zeros(N_STEPS + 1)\n",
+ "mass_conc[0] = aero_state.total_mass_conc\n",
+ "time = np.zeros(N_STEPS + 1)\n",
+ "gas_mix_rat = np.zeros((N_STEPS + 1, gas_state.n_spec))\n",
+ "gas_mix_rat[0, :] = gas_state.mix_rats\n",
+ "\n",
+ "height = np.zeros((N_STEPS + 1))\n",
+ "temperature = np.zeros((N_STEPS + 1))\n",
+ "rh = np.zeros((N_STEPS + 1))\n",
+ "\n",
+ "height[0] = env_state.height\n",
+ "temperature[0] = env_state.temp\n",
+ "rh[0] = env_state.rh\n",
+ "\n",
+ "diam_grid = ppmc.BinGrid(30, \"log\", 1e-9, 1e-6)\n",
+ "dists = []\n",
+ "dry_diameters = aero_state.dry_diameters\n",
+ "num_concs = aero_state.num_concs\n",
+ "dists.append(ppmc.histogram_1d(diam_grid, dry_diameters, num_concs))\n",
+ "dist_times = [0]\n",
+ "\n",
+ "last_output_time = 0.\n",
+ "last_progress_time = 0.\n",
+ "i_output = 1\n",
+ "\n",
+ "for i_time in range(1,N_STEPS + 1):\n",
+ " (last_output_time, last_progress_time, i_output) = ppmc.run_part_timestep(\n",
+ " scenario,\n",
+ " env_state,\n",
+ " aero_data,\n",
+ " aero_state,\n",
+ " gas_data,\n",
+ " gas_state,\n",
+ " run_part_opt,\n",
+ " camp_core,\n",
+ " photolysis,\n",
+ " i_time,\n",
+ " T_INITIAL,\n",
+ " last_output_time,\n",
+ " last_progress_time,\n",
+ " i_output\n",
+ " )\n",
+ "\n",
+ " num_conc[i_time] = aero_state.total_num_conc\n",
+ " mass_conc[i_time] = aero_state.total_mass_conc\n",
+ " time[i_time] = env_state.elapsed_time\n",
+ " gas_mix_rat[i_time, :] = gas_state.mix_rats\n",
+ " height[i_time] = env_state.height\n",
+ " temperature[i_time] = env_state.temp\n",
+ " rh[i_time] = env_state.rh\n",
+ " if np.mod(i_time * run_part_opt.del_t, 420.0) == 0:\n",
+ " dry_diameters = aero_state.dry_diameters\n",
+ " mobility_diameters = aero_state.mobility_diameters(env_state)\n",
+ " num_concs = aero_state.num_concs\n",
+ " dists.append(ppmc.histogram_1d(diam_grid, dry_diameters, num_concs))\n",
+ " dist_times.append(env_state.elapsed_time)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "id": "82c0cebb",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "plt.rcParams.update({'font.size': 9})\n",
+ "plt.rcParams.update({'figure.figsize': (3.08,2.5)})\n",
+ "plt.rcParams.update({\"axes.grid\" : True})"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 15,
+ "id": "9ab2aeed-c8f3-4683-82f0-2837d7191372",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Overwriting ref_aero_time.txt\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%file ref_aero_time.txt\n",
+ "0\t1.30898E+11\t3.25738E-07\n",
+ "420\t1.19515E+11\t3.21076E-07\n",
+ "840\t1.09495E+11\t3.18544E-07\n",
+ "1260\t1.01068E+11\t3.1369E-07\n",
+ "1680\t94134900000\t3.1467E-07\n",
+ "2100\t87897200000\t3.10829E-07\n",
+ "2520\t82551400000\t3.08678E-07\n",
+ "2940\t77647400000\t3.04676E-07\n",
+ "3360\t73623800000\t3.01067E-07\n",
+ "3780\t67930500000\t2.95461E-07\n",
+ "4200\t65888100000\t2.90071E-07\n",
+ "4620\t62582400000\t2.84073E-07\n",
+ "5040\t59765600000\t2.80337E-07\n",
+ "5460\t57719900000\t2.8295E-07\n",
+ "5880\t54980200000\t2.83708E-07\n",
+ "6300\t52876900000\t2.78871E-07\n",
+ "6720\t51163400000\t2.76975E-07\n",
+ "7140\t49071700000\t2.75866E-07\n",
+ "7560\t46814100000\t2.71413E-07\n",
+ "7980\t45264200000\t2.67989E-07\n",
+ "8400\t43484200000\t2.6377E-07\n",
+ "8820\t42400400000\t2.64128E-07\n",
+ "9240\t40871900000\t2.58219E-07\n",
+ "9660\t39407200000\t2.53514E-07\n",
+ "10080\t38229100000\t2.52278E-07\n",
+ "10500\t37014700000\t2.4769E-07\n",
+ "10920\t35644000000\t2.42154E-07\n",
+ "11340\t34410900000\t2.40518E-07\n",
+ "11760\t33681200000\t2.43037E-07\n",
+ "12180\t32030300000\t2.40009E-07\n",
+ "12600\t31212500000\t2.38165E-07\n",
+ "13020\t30291900000\t2.34896E-07\n",
+ "13440\t29387600000\t2.30355E-07\n",
+ "13860\t28567600000\t2.30407E-07\n",
+ "14280\t27855500000\t2.28884E-07\n",
+ "14700\t26997800000\t2.23884E-07\n",
+ "15120\t26348700000\t2.21466E-07\n",
+ "15540\t25458700000\t2.15623E-07\n",
+ "15960\t24840600000\t2.14156E-07\n",
+ "16380\t24219400000\t2.09616E-07\n",
+ "16800\t23710900000\t2.05986E-07\n",
+ "17220\t23038300000\t2.05518E-07\n",
+ "17640\t22625600000\t2.02444E-07\n",
+ "18060\t22069200000\t2.03548E-07\n",
+ "18480\t21447500000\t1.99564E-07\n",
+ "18900\t20930500000\t1.98804E-07\n",
+ "19320\t20511200000\t1.98153E-07\n",
+ "19740\t20020700000\t1.95232E-07\n",
+ "20160\t19622600000\t1.90199E-07"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "id": "72077383-7d47-4265-ae8c-a1dcd10db293",
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "Writing ref_aero_size_num.txt\n"
+ ]
+ }
+ ],
+ "source": [
+ "%%file ref_aero_size_num.txt\n",
+ "1.36E-08\t6.60E+08\t6.53E+07\t1.50E+08\t2.61E+08\t6.53E+07\t6.53E+07\t1.96E+08\t9.09E+07\t1.31E+08\t1.31E+08\t6.53E+07\t0\t6.53E+07\t6.53E+07\t0\t1.96E+08\t6.53E+07\t1.31E+08\t6.53E+07\t0\t0\t1.96E+08\t0\t6.58E+06\t0\t0\t0\t1.96E+08\t1.31E+08\t0\t1.31E+08\t0\t6.53E+07\t6.53E+07\t6.53E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "1.41E-08\t6.76E+08\t4.34E+08\t1.24E+08\t6.21E+07\t0\t6.21E+07\t1.24E+08\t5.58E+07\t0\t0\t0\t0\t0\t1.24E+08\t6.21E+07\t1.24E+08\t6.21E+07\t0\t0\t0\t0\t0\t6.21E+07\t5.58E+07\t0\t0\t0\t6.21E+07\t6.21E+07\t0\t0\t0\t0\t6.21E+07\t0\t0\t0\t0\t6.21E+07\t0\t2.94E+07\t6.21E+07\t6.21E+07\t6.21E+07\t0\t6.21E+07\t0\t0\t6.21E+07\n",
+ "1.46E-08\t2.95E+08\t1.18E+08\t1.77E+08\t4.87E+07\t0\t5.90E+07\t5.90E+07\t1.77E+08\t0\t5.90E+07\t0\t0\t0\t5.90E+07\t5.90E+07\t1.18E+08\t0\t5.90E+07\t0\t0\t0\t0\t0\t0\t4.87E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t5.90E+07\t0\t0\t5.90E+07\t0\t1.49E+08\t5.90E+07\t0\t5.90E+07\t0\t0\t5.90E+07\t0\t0\n",
+ "1.51E-08\t2.82E+08\t3.38E+08\t2.82E+08\t9.82E+06\t5.63E+07\t0\t8.81E+06\t0\t1.13E+08\t0\t0\t0\t0\t0\t0\t0\t1.13E+08\t0\t0\t0\t0\t1.13E+08\t5.63E+07\t0\t9.82E+06\t0\t0\t5.63E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t5.63E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "1.57E-08\t4.83E+08\t3.76E+08\t1.32E+08\t5.37E+07\t5.37E+07\t1.07E+08\t9.90E+07\t0\t1.07E+08\t1.07E+08\t0\t0\t0\t5.37E+07\t0\t0\t0\t0\t0\t0\t5.37E+07\t0\t0\t0\t0\t0\t0\t5.37E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t2.50E+07\t0\t0\t5.37E+07\t0\t0\t0\t0\n",
+ "1.63E-08\t5.12E+08\t3.59E+08\t1.30E+08\t5.12E+07\t5.12E+07\t0\t1.54E+08\t5.12E+07\t0\t0\t0\t0\t0\t5.12E+07\t0\t0\t0\t0\t0\t0\t0\t0\t5.12E+07\t0\t5.12E+07\t0\t0\t5.12E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t5.12E+07\t7.87E+07\t5.12E+07\t0\t0\t5.12E+07\t0\t0\t0\n",
+ "1.68E-08\t2.45E+08\t2.94E+08\t1.47E+08\t0\t0\t1.47E+08\t1.47E+08\t0\t4.89E+07\t0\t0\t0\t0\t0\t9.79E+07\t4.89E+07\t4.89E+07\t4.89E+07\t0\t4.89E+07\t0\t0\t0\t0\t0\t0\t4.89E+07\t4.89E+07\t4.89E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t4.89E+07\t0\t0\t0\t0\t0\t0\t0\n",
+ "1.75E-08\t5.62E+08\t4.33E+08\t3.40E+08\t4.68E+07\t9.37E+07\t4.68E+07\t4.68E+07\t0\t0\t4.68E+07\t9.37E+07\t0\t0\t4.68E+07\t0\t4.68E+07\t0\t0\t0\t0\t0\t1.16E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "1.81E-08\t6.28E+08\t6.62E+08\t3.48E+08\t1.35E+08\t8.97E+07\t1.35E+08\t0\t8.97E+07\t4.48E+07\t8.97E+07\t8.97E+07\t0\t0\t0\t0\t0\t0\t4.48E+07\t4.48E+07\t4.48E+07\t0\t1.23E+08\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t4.48E+07\t0\t0\t0\t4.48E+07\n",
+ "1.88E-08\t8.17E+08\t6.02E+08\t2.15E+08\t1.29E+08\t8.60E+07\t0\t8.60E+07\t4.30E+07\t0\t0\t0\t4.30E+07\t0\t4.30E+07\t4.30E+07\t4.30E+07\t0\t0\t0\t0\t8.60E+07\t4.30E+07\t0\t0\t0\t0\t0\t0\t4.30E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t4.30E+07\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "1.95E-08\t9.90E+08\t7.42E+08\t3.30E+08\t4.12E+07\t0\t8.25E+07\t1.24E+08\t8.25E+07\t0\t0\t4.12E+07\t0\t0\t0\t4.12E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t4.12E+07\t4.12E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.02E-08\t1.50E+09\t8.31E+08\t3.17E+08\t1.58E+08\t1.98E+08\t7.92E+07\t7.92E+07\t7.92E+07\t3.96E+07\t0\t0\t3.96E+07\t3.96E+07\t0\t0\t0\t0\t0\t0\t0\t0\t3.96E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.09E-08\t1.38E+09\t8.92E+08\t7.89E+08\t2.26E+08\t1.25E+08\t1.36E+08\t1.72E+08\t1.01E+08\t1.03E+08\t0\t3.22E+07\t0\t1.11E+08\t7.33E+07\t3.52E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t3.77E+07\t3.79E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t3.80E+07\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.17E-08\t2.00E+09\t1.74E+09\t8.05E+08\t3.11E+08\t3.68E+08\t4.79E+07\t1.19E+08\t9.36E+07\t0\t3.46E+07\t0\t6.49E+07\t0\t0\t3.59E+07\t0\t3.33E+07\t0\t3.41E+07\t3.47E+07\t0\t0\t0\t0\t0\t7.21E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.25E-08\t1.74E+09\t1.43E+09\t7.44E+08\t6.24E+08\t2.68E+08\t1.31E+08\t1.79E+08\t1.48E+08\t4.94E+07\t6.06E+07\t5.76E+07\t0\t2.61E+07\t1.33E+08\t9.22E+07\t3.34E+07\t0\t2.85E+07\t3.03E+07\t6.78E+07\t0\t3.48E+07\t3.18E+07\t0\t0\t0\t0\t0\t3.50E+07\t3.52E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.33E-08\t2.25E+09\t1.53E+09\t7.73E+08\t2.85E+08\t2.63E+08\t2.47E+08\t1.21E+08\t6.02E+07\t1.40E+08\t0\t4.33E+07\t0\t2.41E+07\t5.73E+07\t5.72E+07\t2.69E+07\t0\t0\t2.95E+07\t0\t0\t2.80E+07\t0\t0\t2.17E+06\t0\t3.18E+07\t0\t3.38E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.41E-08\t3.02E+09\t2.50E+09\t1.73E+09\t1.13E+09\t6.91E+08\t4.27E+08\t4.20E+08\t1.84E+08\t2.53E+08\t4.79E+07\t7.33E+07\t0\t5.26E+07\t1.78E+08\t0\t1.86E+07\t5.82E+07\t0\t0\t0\t0\t3.07E+07\t0\t2.44E+07\t2.77E+07\t6.32E+07\t3.15E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t3.25E+07\n",
+ "2.50E-08\t4.41E+09\t2.75E+09\t2.08E+09\t9.45E+08\t5.30E+08\t3.82E+08\t2.80E+08\t1.46E+08\t1.63E+08\t0\t2.12E+07\t1.18E+08\t3.96E+07\t7.59E+07\t7.44E+07\t1.12E+08\t8.10E+07\t7.80E+07\t2.26E+07\t0\t2.09E+07\t0\t0\t0\t0\t5.79E+07\t0\t0\t2.77E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.59E-08\t5.43E+09\t3.04E+09\t2.39E+09\t1.44E+09\t6.82E+08\t6.77E+08\t5.30E+08\t3.84E+08\t2.02E+08\t2.10E+07\t8.61E+07\t1.85E+08\t9.72E+06\t2.09E+08\t1.43E+08\t603192\t3.29E+07\t3.89E+07\t4.13E+07\t1.17E+07\t7.47E+07\t7.45E+07\t2.15E+07\t2.41E+07\t0\t2.37E+07\t0\t2.26E+07\t2.75E+07\t0\t0\t2.89E+07\t0\t0\t0\t0\t0\t0\t0\t0\t2.98E+07\t0\t0\t0\t0\t0\t0\t0\t0\n",
+ "2.69E-08\t5.65E+09\t4.55E+09\t2.25E+09\t1.67E+09\t7.85E+08\t9.82E+08\t7.37E+08\t4.46E+08\t2.11E+08\t2.32E+08\t2.84E+08\t6.96E+07\t1.55E+08\t6.18E+07\t5.11E+07\t7.31E+07\t5.01E+07\t1.76E+08\t2.97E+07\t0\t7.49E+06\t6.60E+06\t9.73E+07\t1.44E+07\t0\t2.31E+07\t7.65E+07\t2.00E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t2.87E+07\t0\t0\t0\t2.88E+07\t0\t0\t0\t0\n",
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+ "3.00E-08\t9.83E+09\t8.83E+09\t4.24E+09\t3.69E+09\t2.48E+09\t1.49E+09\t1.63E+09\t1.17E+09\t9.70E+08\t1.02E+08\t5.24E+08\t2.63E+08\t2.97E+08\t2.48E+08\t2.54E+08\t2.31E+08\t6.91E+07\t1.33E+08\t8.09E+07\t1.82E+08\t1.55E+08\t1.25E+08\t5.57E+07\t9.31E+07\t1.18E+08\t2.03E+07\t0\t2.22E+07\t3.01E+07\t1.24E+07\t0\t0\t1.28E+07\t0\t1.44E+07\t2.42E+07\t2.39E+07\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\t0\n",
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+ "3.34E-08\t1.81E+10\t1.37E+10\t8.71E+09\t5.70E+09\t4.79E+09\t3.67E+09\t2.91E+09\t2.48E+09\t1.76E+09\t7.01E+08\t1.47E+09\t8.27E+08\t5.86E+08\t6.25E+08\t6.32E+08\t4.21E+08\t5.68E+08\t3.83E+08\t2.63E+08\t1.75E+08\t1.27E+08\t3.52E+08\t1.77E+08\t1.31E+08\t1.01E+08\t1.49E+08\t1.24E+08\t3.87E+07\t5.74E+06\t4.03E+07\t5.85E+07\t2.84E+07\t0\t2.30E+06\t4.28E+07\t0\t0\t4.63E+07\t0\t0\t2.71E+07\t0\t0\t9.04E+06\t0\t1.30E+07\t0\t0\t1.54E+07\n",
+ "3.46E-08\t2.22E+10\t1.54E+10\t1.03E+10\t8.71E+09\t6.25E+09\t4.72E+09\t3.54E+09\t2.29E+09\t2.10E+09\t8.96E+08\t1.41E+09\t1.30E+09\t6.49E+08\t8.84E+08\t8.07E+08\t7.42E+08\t3.54E+08\t7.43E+08\t5.07E+08\t4.71E+08\t2.63E+08\t9.41E+07\t2.79E+08\t4.34E+08\t5.40E+07\t9.26E+07\t5.30E+07\t2.42E+07\t0\t2.95E+07\t0\t7.42E+07\t0\t1.85E+07\t6.07E+06\t0\t0\t0\t2.25E+07\t0\t5.19E+07\t4.18E+07\t0\t2.35E+07\t4.02E+06\t0\t0\t2.82E+07\t0\n",
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+ "3.72E-08\t2.95E+10\t2.16E+10\t1.40E+10\t1.08E+10\t9.02E+09\t6.98E+09\t5.68E+09\t4.27E+09\t4.17E+09\t1.64E+09\t2.74E+09\t2.42E+09\t2.18E+09\t1.39E+09\t1.50E+09\t1.23E+09\t1.16E+09\t9.14E+08\t6.67E+08\t7.69E+08\t6.91E+08\t6.98E+08\t3.53E+08\t2.53E+08\t3.22E+08\t2.88E+08\t2.39E+08\t3.31E+08\t1.11E+08\t0\t4.21E+07\t5.33E+07\t1.32E+08\t2.95E+07\t3.55E+07\t1.30E+08\t1.43E+08\t4.85E+07\t6.72E+07\t8.07E+07\t2.79E+07\t3.89E+07\t0\t4.49E+06\t0\t6.48E+07\t0\t1.22E+07\t1.44E+07\n",
+ "3.85E-08\t3.44E+10\t2.58E+10\t1.85E+10\t1.37E+10\t1.13E+10\t8.69E+09\t6.28E+09\t5.24E+09\t4.26E+09\t2.27E+09\t3.37E+09\t2.87E+09\t1.83E+09\t2.12E+09\t1.46E+09\t1.64E+09\t1.43E+09\t1.12E+09\t9.26E+08\t1.15E+09\t8.15E+08\t8.54E+08\t7.59E+08\t5.20E+08\t3.63E+08\t2.05E+08\t4.35E+08\t3.43E+08\t3.10E+08\t2.48E+08\t2.97E+08\t2.11E+08\t1.23E+07\t1.20E+08\t7.61E+07\t0\t2.44E+07\t1.40E+08\t0\t0\t3.01E+07\t2.98E+07\t0\t93744.2\t2.87E+07\t1.67E+07\t0\t2.20E+07\t0\n",
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+ "7.92E-07\t1.35E+08\t1.88E+08\t1.62E+08\t2.03E+08\t2.01E+08\t8.08E+07\t2.15E+08\t6.68E+07\t6.86E+07\t2.69E+07\t5.39E+07\t1.08E+08\t2.69E+07\t1.62E+08\t3.24E+08\t8.08E+07\t8.08E+07\t1.89E+08\t1.62E+08\t9.38E+07\t8.08E+07\t1.88E+08\t4.17E+07\t0\t9.56E+07\t5.39E+07\t8.08E+07\t1.76E+08\t1.75E+08\t1.22E+08\t2.01E+08\t1.76E+08\t6.68E+07\t6.68E+07\t5.39E+07\t2.69E+07\t1.62E+08\t8.08E+07\t0\t2.69E+07\t1.08E+08\t1.35E+08\t8.08E+07\t9.56E+07\t1.88E+08\t1.35E+08\t8.08E+07\t5.39E+07\t1.30E+07\n",
+ "8.21E-07\t2.47E+08\t2.74E+08\t1.51E+08\t1.36E+08\t2.74E+07\t1.92E+08\t1.37E+08\t1.92E+08\t1.49E+08\t5.48E+07\t5.48E+07\t5.48E+07\t0\t1.92E+08\t2.04E+08\t3.02E+08\t1.37E+08\t9.46E+07\t1.78E+08\t1.10E+08\t8.22E+07\t2.74E+07\t6.72E+07\t8.22E+07\t9.46E+07\t5.48E+07\t8.22E+07\t1.49E+08\t2.47E+08\t6.72E+07\t1.10E+08\t1.49E+08\t8.22E+07\t9.59E+07\t1.10E+08\t5.48E+07\t2.74E+07\t1.10E+08\t0\t2.74E+07\t8.22E+07\t1.64E+08\t5.48E+07\t1.22E+08\t5.48E+07\t5.48E+07\t1.23E+08\t1.64E+08\t1.64E+08"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 17,
+ "id": "8e1b89e0",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "image/svg+xml": [
+ "\n",
+ "\n",
+ "\n"
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/vnd.jupyter.widget-view+json": {
+ "model_id": "fc0a6a491ebc4ca0ac13b9932219e9a9",
+ "version_major": 2,
+ "version_minor": 0
+ },
+ "text/plain": [
+ "HTML(value=\"./tmpw9k3fqw7.pdf
\")"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "plt.xlabel(\"Time (s)\")\n",
+ "plt.plot(time, num_conc, \"g\", label=\"num conc\")\n",
+ "plt.xticks(np.linspace(0, time[-1], 5))\n",
+ "plt.xlim([time[0],time[-1]])\n",
+ "plt.ylabel(r\"Number concentration ($\\#$ m$^{-3}$)\", color='g')\n",
+ "barrel = np.loadtxt('ref_aero_time.txt')\n",
+ "plt.plot(barrel[:,0],barrel[:,1],'k')\n",
+ "show_plot()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 18,
+ "id": "faa1de28",
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "image/svg+xml": [
+ "\n",
+ "\n",
+ "\n"
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ },
+ {
+ "data": {
+ "application/vnd.jupyter.widget-view+json": {
+ "model_id": "46d65a88913d4fa69379eeca56bfcefb",
+ "version_major": 2,
+ "version_minor": 0
+ },
+ "text/plain": [
+ "HTML(value=\"./tmpgd8zupv1.pdf
\")"
+ ]
+ },
+ "metadata": {},
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "plot_times = [0,1,10,30]\n",
+ "barrel = np.loadtxt('ref_aero_size_num.txt')\n",
+ "diams_barrel = barrel[:,0]\n",
+ "\n",
+ "for plot_time in plot_times:\n",
+ " p = plt.plot(diam_grid.centers, np.array(dists[plot_time]) * np.log(10),\n",
+ " label=f'$t = {dist_times[plot_time] / 60:0.0f}$ m', lw=1)\n",
+ " plt.plot(diams_barrel, barrel[:,plot_time+1],'--',c=p[0].get_color(),lw=1)\n",
+ "plt.xscale(\"log\")\n",
+ "plt.xlabel(\"Dry diameter (m)\")\n",
+ "plt.ylabel(r\"Number concentration $n(D)$ ($\\#$ m$^{-3}$)\")\n",
+ "plt.ylim(bottom=0)\n",
+ "plt.legend()\n",
+ "plt.xlim([diam_grid.edges[0],diam_grid.edges[-1]])\n",
+ "show_plot()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "44475ce8",
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.9.2"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}
diff --git a/examples/chamber_data/0925/ref_aero_size_num.txt b/examples/chamber_data/0925/ref_aero_size_num.txt
new file mode 100644
index 00000000..674733f2
--- /dev/null
+++ b/examples/chamber_data/0925/ref_aero_size_num.txt
@@ -0,0 +1,115 @@
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diff --git a/examples/chamber_data/0925/ref_aero_time.txt b/examples/chamber_data/0925/ref_aero_time.txt
new file mode 100644
index 00000000..5b70cf2c
--- /dev/null
+++ b/examples/chamber_data/0925/ref_aero_time.txt
@@ -0,0 +1,49 @@
+0 1.30898E+11 3.25738E-07
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diff --git a/src/aero_state.F90 b/src/aero_state.F90
index 72991192..231730e4 100644
--- a/src/aero_state.F90
+++ b/src/aero_state.F90
@@ -57,7 +57,6 @@ subroutine f_aero_state_init(ptr_c, aero_data_ptr_c, n_part, weight_c) bind(C)
call c_f_pointer(aero_data_ptr_c, aero_data_ptr_f)
call aero_state_zero(ptr_f)
- call fractal_set_spherical(aero_data_ptr_f%fractal)
call aero_state_set_weight(ptr_f, aero_data_ptr_f, weight_f)
call aero_state_set_n_part_ideal(ptr_f, n_part)
end subroutine