diff --git a/pipeline/misc/dev/test_setup.Rmd b/pipeline/misc/dev/test_setup.Rmd index 8019aa6..55100d1 100644 --- a/pipeline/misc/dev/test_setup.Rmd +++ b/pipeline/misc/dev/test_setup.Rmd @@ -185,7 +185,10 @@ misc/dev/test_data/output/reference/target_checks/example_plink2/indiv_report-4_ --configfile=misc/dev/test_data/config/config.yaml # Move output outside the container so it can be pushed to the repo -mv misc/dev/test_data/output /scratch/prj/oliverpainfel/Software/MyGit/GenoPred/pipeline/misc/dev/test_data/output +mkdir /scratch/prj/oliverpainfel/Software/MyGit/GenoPred/pipeline/misc/dev/test_data/output +cp -r misc/dev/test_data/output/* /scratch/prj/oliverpainfel/Software/MyGit/GenoPred/pipeline/misc/dev/test_data/output/ + +# ``` ***