_config.yml

# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole site, values
# which you are expected to set up once and rarely edit after that. If you find
# yourself editing these this file very often, consider using Jekyll's data files
# feature for the data you need to update frequently.
#
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'jekyll serve'. If you change this file, please restart the server process.

# Site settings
# These are used to personalize your new site. If you look in the HTML files,
# you will see them accessed via {{ site.title }}, {{ site.github_repo }}, and so on.
# You can create any custom variable you would like, and they will be accessible
# in the templates via {{ site.myvariable }}.
version: 0.7.0
url: "https://ontoportal.github.io" # the base hostname & protocol for your site
baseimgs: "/documentation/assets/images/ontoportal"
figures_link: "/documentation/assets/images/ontoportal/figures"
opva: OntoPortal Virtual Appliance
opva_version: Virtual Appliance 3.0
release_version: Release 3.2.2
opa: OntoPortal Alliance
support_email: support@ontoportal.org  # for dev support only, not for end user support
twitter_username: ontoportal
github_username:  ontoportal
email: jgraybeal@stanford.edu  # not sure what this is used for

title: OntoPortal Documentation
description: Official installation, maintenance, usage and contribution documentation for OntoPortal.
baseurl: "/documentation" # the subpath of your site, e.g. /blog

# Set a path/url to a logo that will be displayed instead of the title
logo: "/assets/images/ontoportal/OntoPortal-Logo-Circle.png"

permalink: pretty

exclude:
 # from https://github.com/jekyll/jekyll/blob/master/lib/site_template/_config.yml:
   - .sass-cache/
   - .jekyll-cache/
   - .idea/
   - gemfiles/
   - Gemfile
   - Gemfile.lock
   - node_modules/
   - vendor/bundle/
   - vendor/cache/
   - vendor/gems/
   - vendor/ruby/
 # specific to the theme website:
   - bin/
   - lib/
   - "*.gemspec"
   - "*.gem"
   - LICENSE.txt
   - package.json
   - package-lock.json
   - Rakefile

# Set a path/url to a logo that will be displayed instead of the title
#logo: "/assets/images/just-the-docs.png"

# Enable or disable the site search
# Supports true (default) or false
search_enabled: true
search:
  # Split pages into sections that can be searched individually
  # Supports 1 - 6, default: 2
  heading_level: 2
  # Maximum amount of previews per search result
  # Default: 3
  previews: 2
  # Maximum amount of words to display before a matched word in the preview
  # Default: 5
  preview_words_before: 3
  # Maximum amount of words to display after a matched word in the preview
  # Default: 10
  preview_words_after: 3
  # Set the search token separator
  # Default: /[\s\-/]+/
  # Example: enable support for hyphenated search words
  tokenizer_separator: /[\s/]+/
  # Display the relative url in search results
  # Supports true (default) or false
  rel_url: true
  # Enable or disable the search button that appears in the bottom right corner of every page
  # Supports true or false (default)
  button: false

# To disable support for mermaid diagrams (https://mermaid-js.github.io/mermaid/),
# comment out the `mermaid` and `version` keys below
# By default, consuming the theme as a gem leaves mermaid disabled; it is opt-in
mermaid:
  # Version of mermaid library
  # Pick an available version from https://cdn.jsdelivr.net/npm/mermaid/
  version: "9.1.6"
  # Put any additional configuration, such as setting the theme, in _includes/mermaid_config.js
  # See also docs/ui-components/code

# Enable or disable heading anchors
heading_anchors: true

# Aux links for the upper right navigation
aux_links:
  "OntoPortal on GitHub":
    - "//github.com/ontoportal"

# Makes Aux links open in a new tab. Default is false
aux_links_new_tab: false

# Sort order for navigation links
# nav_sort: case_insensitive # default, equivalent to nil
nav_sort: case_sensitive # Capital letters sorted before lowercase

# External navigation links
nav_external_links:
  - title: OntoPortal on GitHub
    url: https://github.com/ontoportal

# Footer content
# appears at the bottom of every page's main content

# Back to top link
back_to_top: true
back_to_top_text: "Back to top"

footer_content: "Copyright © 2024 OntoPortal Alliance"

# Footer last edited timestamp
last_edit_timestamp: true # show or hide edit time - page must have `last_modified_date` defined in the frontmatter
last_edit_time_format: "%b %e %Y at %I:%M %p" # uses ruby's time format: https://ruby-doc.org/stdlib-2.7.0/libdoc/time/rdoc/Time.html



# Footer "Edit this page on GitHub" link text
gh_edit_link: true # show or hide edit this page link
gh_edit_link_text: "Edit this page on GitHub"
gh_edit_repository: "https://github.com/ontoportal/documentation" # the github URL for your repo
gh_edit_branch: "master" # the branch that your docs is served from
# gh_edit_source: docs # the source that your files originate from
gh_edit_view_mode: "tree" # "tree" or "edit" if you want the user to jump into the editor immediately

# Color scheme currently only supports "dark", "light"/nil (default), or a custom scheme that you define
color_scheme: nil

callouts_level: quiet # or loud
callouts:
  highlight:
    color: yellow
  important:
    title: Important
    color: blue
  new:
    title: New
    color: green
  note:
    title: Note
    color: purple
  warning:
    title: Warning
    color: red

# Google Analytics Tracking (optional)
# e.g, UA-1234567-89
ga_tracking: UA-2709176-10
ga_tracking_anonymize_ip: true # Use GDPR compliant Google Analytics settings (true/nil by default)

plugins:
  - jekyll-seo-tag

kramdown:
  syntax_highlighter_opts:
    block:
      line_numbers: false

compress_html:
  clippings: all
  comments: all
  endings: all
  startings: []
  blanklines: false
  profile: false
  # ignore:
  #   envs: all

defaults:
  - 
    scope:
      path: "docs/users-guide-docs/documentation/ontoportal"
      type: "pages"
    values:
      portal: "OntoPortal"
      atom: "ontology"
      atoms: "ontologies"
      display_ontoportal_icons: true
  - 
    scope:
      path: "docs/users-guide-docs/documentation/bioportal"
      type: "pages"
    values:
      portal: "BioPortal"
      atom: "ontology"
      atoms: "ontologies"
      display_ontoportal_icons: true
  - 
    scope:
      path: "docs/users-guide-docs/documentation/agroportal"
      type: "pages"
    values:
      portal: "AgroPortal"
      atom: "semantic artefact"
      atoms: "semantic artefacts"
      display_ontoportal_icons: true
  - 
    scope:
      path: "docs/users-guide-docs/documentation/ecoportal"
      type: "pages"
    values:
      portal: "EcoPortal"
      atom: "semantic artefact"
      atoms: "semantic artefacts"
      display_ontoportal_icons: true
  - 
    scope:
      path: "docs/users-guide-docs/documentation/earthportal"
      type: "pages"
    values:
      portal: "EarthPortal"
      atom: "semantic artefact"
      atoms: "semantic artefacts"
      display_ontoportal_icons: true