From 20c365fdbec7c868353eded6dd799cb947b55778 Mon Sep 17 00:00:00 2001 From: Hongxin Date: Thu, 19 Jan 2023 15:07:11 -0600 Subject: [PATCH] Update test_Annotation.py Base on data v4.0 --- test_Annotation.py | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/test_Annotation.py b/test_Annotation.py index 292067d..cd78542 100644 --- a/test_Annotation.py +++ b/test_Annotation.py @@ -133,8 +133,8 @@ def test_check_atypical_alts(): annotation = annotations[2] assert len(annotation) == NUMBER_OF_ANNOTATION_COLUMNS - assert annotation[MUTATION_EFFECT_INDEX] == 'Gain-of-function' - assert annotation[ONCOGENIC_INDEX] == 'Oncogenic' + assert annotation[MUTATION_EFFECT_INDEX] == 'Likely Gain-of-function' + assert annotation[ONCOGENIC_INDEX] == 'Likely Oncogenic' assert annotation[HIGHEST_LEVEL_INDEX] == '' annotation_dup = annotations[3] @@ -170,8 +170,8 @@ def test_check_hgvsg(): annotation = annotations[2] assert len(annotation) == NUMBER_OF_ANNOTATION_COLUMNS - assert annotation[MUTATION_EFFECT_INDEX] == 'Gain-of-function' - assert annotation[ONCOGENIC_INDEX] == 'Oncogenic' + assert annotation[MUTATION_EFFECT_INDEX] == 'Likely Gain-of-function' + assert annotation[ONCOGENIC_INDEX] == 'Likely Oncogenic' assert annotation[HIGHEST_LEVEL_INDEX] == '' @@ -203,8 +203,8 @@ def test_check_genomic_change(): annotation = annotations[2] assert len(annotation) == NUMBER_OF_ANNOTATION_COLUMNS - assert annotation[MUTATION_EFFECT_INDEX] == 'Gain-of-function' - assert annotation[ONCOGENIC_INDEX] == 'Oncogenic' + assert annotation[MUTATION_EFFECT_INDEX] == 'Likely Gain-of-function' + assert annotation[ONCOGENIC_INDEX] == 'Likely Oncogenic' assert annotation[HIGHEST_LEVEL_INDEX] == ''