From a4aeb8ab11690e82f4fd7e33c360ae98fe1746c4 Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 14:36:03 +0000 Subject: [PATCH 1/7] Switch from pipenv/Pipfile to poetry/pyproject.toml --- Makefile | 37 +- Pipfile | 41 - Pipfile.lock | 1841 -------------------------- poetry.lock | 3394 ++++++++++++++++++++++++++++++++++++++++++++++++ pyproject.toml | 61 + setup.py | 55 - 6 files changed, 3474 insertions(+), 1955 deletions(-) delete mode 100644 Pipfile delete mode 100644 Pipfile.lock create mode 100644 poetry.lock create mode 100644 pyproject.toml delete mode 100755 setup.py diff --git a/Makefile b/Makefile index 45b46c5..dd7d046 100644 --- a/Makefile +++ b/Makefile @@ -4,41 +4,43 @@ CPU_IMAGE?="timeserio:latest" .PHONY: yapf lint clean sync lock test test-parallel docs-build docs-clean circle build-cpu build-gpu release yapf: - pipenv run yapf -vv -ir . - pipenv run isort -y + poetry run yapf -vv -ir . + poetry run isort -y lint: - pipenv run flake8 . - pipenv run pydocstyle . - pipenv run mypy . + poetry run flake8 . + poetry run pydocstyle . + poetry run mypy . clean: find . | grep -E '(__pycache__|\.pyc|\.pyo$$)' | xargs rm -rf + rm -rf dist/ + rm -rf build/ sync: - pipenv sync --dev + poetry install lock: - pipenv lock --dev + poetry lock test: - pipenv run pytest tests/ + poetry run pytest tests/ test-parallel: - pipenv run pytest -n auto tests/ + poetry run pytest -n auto tests/ doctest: - pipenv run pytest --doctest-modules timeserio/ + poetry run pytest --doctest-modules timeserio/ docs-build: - pipenv run $(MAKE) -C docs html + poetry run $(MAKE) -C docs html docs-clean: - pipenv run $(MAKE) -C docs clean + poetry run $(MAKE) -C docs clean rm -rf docs/source/api docs-serve: - pipenv run $(SHELL) -c "cd docs/_build/html; python -m http.server 8000" + poetry run $(SHELL) -c "cd docs/_build/html; python -m http.server 8000" circle: circleci config validate @@ -51,14 +53,13 @@ build-gpu: docker build -t ${GPU_IMAGE} . --build-arg gpu_tag="-gpu" version: - @pipenv run python -c "import timeserio; print(timeserio.__version__)" + @poetry run python -c "import timeserio; print(timeserio.__version__)" package: - pipenv run python setup.py sdist - pipenv run python setup.py bdist_wheel + poetry buil test-release: package - pipenv run twine upload --repository-url https://test.pypi.org/legacy/ dist/* + poetry run twine upload --repository-url https://test.pypi.org/legacy/ dist/* release: package - pipenv run twine upload dist/* + poetry run twine upload dist/* diff --git a/Pipfile b/Pipfile deleted file mode 100644 index 15c783d..0000000 --- a/Pipfile +++ /dev/null @@ -1,41 +0,0 @@ -[[source]] -name = "pypi" -url = "https://pypi.org/simple" -verify_ssl = true - -[dev-packages] -mccabe = "*" -pep8-naming = "*" -flake8 = "*" -pydocstyle = "*" -mypy = "*" -yapf = "*" -pytest = ">=5.3, <6" -pytest-cov = "*" -pytest-benchmark = "*" -pytest-xdist = "<2.0" -pytest-mock = "*" -moto = "*" -glob2 = "*" -codecov = "*" -# -dask = {extras = ["dataframe", "distributed"], version = "*"} -tensorflow = "==1.15.2" -pyarrow = ">=0.15.1" -# sphinx docs -sphinx-autodoc-typehints = ">=1.6.0" -sphinx-rtd-theme = ">=0.4.3" -m2r = ">=0.2.1" -sphinxcontrib-apidoc = ">=0.3.0" -nbsphinx = ">=0.4.2" -nbsphinx-link = ">=1.2.0" -ipython = ">=7.5.0" -# release tools -twine = "*" -tensorpandas = {git = "https://github.com/ig248/tensorpandas.git"} - -[packages] -timeserio = {editable = true,path = "."} - -[requires] -python_version = "3.6" diff --git a/Pipfile.lock b/Pipfile.lock deleted file mode 100644 index a076a8c..0000000 --- a/Pipfile.lock +++ /dev/null @@ -1,1841 +0,0 @@ -{ - "_meta": { - "hash": { - "sha256": "60dfaee3bfc41d981f8a5ae9cc1d772f1d08de72878b85f51cbc562c43f7c39d" - }, - "pipfile-spec": 6, - "requires": { - "python_version": "3.6" - }, - "sources": [ - { - "name": "pypi", - "url": "https://pypi.org/simple", - "verify_ssl": true - } - ] - }, - "default": { - "botocore": { - "hashes": [ - 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and Forecasting tools", - long_description=README, - long_description_content_type="text/markdown", - # Credentials - author="Octopus Energy", - author_email="nerds@octopus.energy", - url="https://github.com/octoenergy/timeserio", - license="MIT", - # Package - packages=find_packages(exclude=("tests",)), - entry_points={"console_scripts": []}, - include_package_data=True, - zip_safe=False, - install_requires=[ - "joblib", - "numpy", - "pandas", - "scikit-learn>=0.23.1", - "s3fs<0.5", # see [1] below - "holidays", - ], - # [1] this is where s3fs switches to async - # https://github.com/aio-libs/aiobotocore/pull/766 - classifiers=[ - "Development Status :: 3 - Alpha", - "Intended Audience :: Developers", - "License :: OSI Approved :: MIT License", - "Operating System :: OS Independent", - "Programming Language :: Python", - "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.6", - ], -) From 2d3558299fdca61dd3e40c243c33cdb2c2098485 Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 14:36:27 +0000 Subject: [PATCH 2/7] Hard-code __version__. NB: consider poetry+versioneer or similar Before this change, the version was single-sourced from git tags. After this change, the version is hard-coded in two places: - pyproject.toml - version.py An automated solution should be considered --- tests/test_version.py | 30 +------------- timeserio/version.py | 92 +------------------------------------------ 2 files changed, 3 insertions(+), 119 deletions(-) diff --git a/tests/test_version.py b/tests/test_version.py index 36fe260..f24603d 100644 --- a/tests/test_version.py +++ b/tests/test_version.py @@ -1,31 +1,5 @@ -import re - -from timeserio.version import get_git_version +from timeserio.version import __version__ def test_version(): - ver = get_git_version(abbrev=7) - # Versions should comply with semver, which is where this regex is from - # see semver.org and github.com/python-semver/python-semver - VER_RE = re.compile( - r""" - ^ - (?P0|[1-9]\d*) - \. - (?P0|[1-9]\d*) - \. - (?P0|[1-9]\d*) - (?:-(?P - (?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*) - (?:\.(?:0|[1-9]\d*|\d*[a-zA-Z-][0-9a-zA-Z-]*))* - ))? - (?:\+(?P - [0-9a-zA-Z-]+ - (?:\.[0-9a-zA-Z-]+)* - ))? - $ - """, - re.VERBOSE, - ) - - assert re.match(VER_RE, ver) + assert len(__version__.split(".")) == 3 diff --git a/timeserio/version.py b/timeserio/version.py index 92cfab0..ffc777a 100644 --- a/timeserio/version.py +++ b/timeserio/version.py @@ -1,94 +1,4 @@ -# based on https://gist.github.com/jpmens/6248478 -__all__ = ["get_git_version"] - -import os -import subprocess - -SHA_ABBREV = 7 # number of characters to abbreviate SHA to - - -def get_home_dir(home_dir=None): - return home_dir or os.path.normpath( - os.path.join(os.path.abspath(__file__), os.pardir, os.pardir) - ) - - -def get_git_dir(home_dir=None): - home_dir = get_home_dir(home_dir) - return os.path.join(home_dir, ".git") - - -def get_release_version_file(home_dir=None): - home_dir = get_home_dir(home_dir) - return os.path.join(home_dir, "timeserio", "RELEASE-VERSION") - - -def call_git_describe(abbrev, home_dir=None): - GIT_DIR = get_git_dir(home_dir) - try: - stdout = subprocess.check_output( - [ - "git", - f"--git-dir={GIT_DIR}", - "describe", - "--tags", - f"--abbrev={abbrev:d}", - "--dirty", - ], - stderr=subprocess.PIPE - ) - return stdout.decode("utf-8").strip() - except (subprocess.CalledProcessError, FileNotFoundError): - return None - - -def read_release_version(home_dir=None): - RELEASE_VERSION = get_release_version_file(home_dir) - try: - with open(RELEASE_VERSION, "r") as f: - version = f.readlines()[0] - return version.strip() - except FileNotFoundError: - return None - - -def write_release_version(version, home_dir=None): - RELEASE_VERSION = get_release_version_file(home_dir) - with open(RELEASE_VERSION, "w") as f: - f.write(f"{version:s}\n") - - -def get_git_version(abbrev=7, home_dir=None): - # Read in the version that's currently in RELEASE-VERSION. - release_version = read_release_version(home_dir) - # First try to get the current version using “git describe”. - version = call_git_describe(abbrev, home_dir) - - # If that doesn't work, fall back on the value that's in - # RELEASE-VERSION. - if version is None: - version = release_version - - # If we still don't have anything, that's an error. - if version is None: - raise ValueError("Cannot find the version number!") - - # If the current version is different from what's in the - # RELEASE-VERSION file, update the file to be current. - if version != release_version: - write_release_version(version, home_dir) - - # Finally, return the current version. - return version - - -# Allow executing with extra globals from exec() -try: - home_dir = HOME_DIR # type: ignore -except NameError: - home_dir = None - -__version__ = get_git_version(SHA_ABBREV, home_dir) +__version__ = "0.11.0" if __name__ == "__main__": From 1f7cea540acc6ecb713afeca2d85458cb34adbfe Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 14:41:28 +0000 Subject: [PATCH 3/7] Remove s3-specific code in favour of generic fsspec URIs --- tests/test_utils/conftest.py | 19 ------------------- tests/test_utils/test_pickle.py | 8 ++------ timeserio/utils/pickle.py | 21 ++++----------------- 3 files changed, 6 insertions(+), 42 deletions(-) delete mode 100644 tests/test_utils/conftest.py diff --git a/tests/test_utils/conftest.py b/tests/test_utils/conftest.py deleted file mode 100644 index 37edaf1..0000000 --- a/tests/test_utils/conftest.py +++ /dev/null @@ -1,19 +0,0 @@ -import pytest - -import boto3 -import moto -import s3fs - - -@pytest.fixture -def test_bucket_name(): - return 'test_bucket' - - -@pytest.fixture -def s3(test_bucket_name): - # writable local S3 system - with moto.mock_s3(): - client = boto3.client('s3') - client.create_bucket(Bucket=test_bucket_name) - yield s3fs.S3FileSystem() diff --git a/tests/test_utils/test_pickle.py b/tests/test_utils/test_pickle.py index 8308a13..e291ca3 100755 --- a/tests/test_utils/test_pickle.py +++ b/tests/test_utils/test_pickle.py @@ -42,12 +42,8 @@ def test_pickle_to_file(self, obj, assert_object_same): obj2 = loadf(f.name) assert_object_same(obj, obj2) - def test_pickle_to_s3( - self, - s3, test_bucket_name, - obj, assert_object_same - ): - filename = f's3://{test_bucket_name}/path/file.pickle' + def test_pickle_to_uri(self, obj, assert_object_same): + filename = 'memory://test/path/file.pickle' dumpf(obj, filename) obj2 = loadf(filename) assert_object_same(obj, obj2) diff --git a/timeserio/utils/pickle.py b/timeserio/utils/pickle.py index c63091e..738a938 100755 --- a/timeserio/utils/pickle.py +++ b/timeserio/utils/pickle.py @@ -1,31 +1,18 @@ -import s3fs -import joblib.externals.cloudpickle as cp +import cloudpickle as cp +import fsspec __all__ = ['dumpf', 'loadf'] -def open_url(filename, mode): - """Open file from local drive or s3 bucket. - - S3 filename must start with `s3://`. - """ - if filename.startswith('s3://'): - s3 = s3fs.S3FileSystem() - file = s3.open(filename, mode) - else: - file = open(filename, mode) - return file - - def dumpf(obj, filename): """Serialize object to file of given name.""" - with open_url(filename, 'wb') as file: + with fsspec.open(filename, 'wb') as file: cp.dump(obj, file) def loadf(filename): """Load serialized object from file of given name.""" - with open_url(filename, 'rb') as file: + with fsspec.open(filename, 'rb') as file: obj = cp.load(file) return obj From ce8e970a6e4d8e3ef85d6a1ea80bfb5414662f9c Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 14:41:42 +0000 Subject: [PATCH 4/7] Ignore docs/ in lint --- docs/source/conf.py | 18 +++++++++--------- setup.cfg | 1 + 2 files changed, 10 insertions(+), 9 deletions(-) diff --git a/docs/source/conf.py b/docs/source/conf.py index d41b15f..1a80cb6 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -26,9 +26,9 @@ # Read version exec(open('../../timeserio/version.py').read()) # short X.Y version -version = __version__ +version = __version__ # noqa # The full version, including alpha/beta/rc tags -release = __version__ +release = __version__ # noqa # -- General configuration --------------------------------------------------- @@ -48,7 +48,7 @@ 'sphinx.ext.mathjax', 'sphinx.ext.ifconfig', 'sphinx.ext.viewcode', - #'recommonmark', + # 'recommonmark', 'sphinx.ext.napoleon', 'sphinx_autodoc_typehints', 'sphinxcontrib.apidoc', # automatically generate API docs, see https://github.com/rtfd/readthedocs.org/issues/1139 @@ -249,14 +249,14 @@ # from https://github.com/vidartf/nbsphinx-link/blob/master/docs/source/conf.py for custom tags import subprocess try: - git_rev = subprocess.check_output(['git', 'describe', '--exact-match', 'HEAD'], universal_newlines=True) + git_rev = subprocess.check_output(['git', 'describe', '--exact-match', 'HEAD'], universal_newlines=True) except subprocess.CalledProcessError: - try: - git_rev = subprocess.check_output(['git', 'rev-parse', 'HEAD'], universal_newlines=True) - except subprocess.CalledProcessError: - git_rev = '' + try: + git_rev = subprocess.check_output(['git', 'rev-parse', 'HEAD'], universal_newlines=True) + except subprocess.CalledProcessError: + git_rev = '' if git_rev: - git_rev = git_rev.splitlines()[0] + '/' + git_rev = git_rev.splitlines()[0] + '/' nbsphinx_prolog = ( r""" diff --git a/setup.cfg b/setup.cfg index f06e0b6..fca42df 100644 --- a/setup.cfg +++ b/setup.cfg @@ -10,6 +10,7 @@ application-import-names=timeserio,tests ignore = T484,T499,D100,D101,D102,D103,D104,D105,D107,D200,N803,N806,W504 [mypy] +exclude = docs/ warn_incomplete_stub = False incremental = True check_untyped_defs = False From 95a235459672c8affc54054e0d91eb21d9248cfc Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 14:57:32 +0000 Subject: [PATCH 5/7] Use poetry in CI poetry is installed once and persisted in workspace, then used in subsequent tasks. --- .circleci/config.yml | 83 ++++++++++++++++++++++++++++++-------------- 1 file changed, 56 insertions(+), 27 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 15ca89f..b872a97 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -9,8 +9,10 @@ jobs: working_directory: ~/timeserio - environment: - PIPENV_VENV_IN_PROJECT: true + environment: # these don't get interpolated + POETRY_VERSION: 1.1.2 + POETRY_HOME: /home/circleci/.poetry + POETRY_VIRTUALENVS_IN_PROJECT: "true" steps: - checkout @@ -18,24 +20,27 @@ jobs: - restore_cache: keys: # when lock file changes, use increasingly general patterns to restore cache - - pip-packages-{{ .Environment.CACHE_VERSION }}-{{ .Branch }}-{{ checksum "Pipfile.lock" }} + - pip-packages-{{ .Environment.CACHE_VERSION }}-{{ .Branch }}-{{ checksum "poetry.lock" }} - pip-packages-{{ .Environment.CACHE_VERSION }}-{{ .Branch }}- - pip-packages-{{ .Environment.CACHE_VERSION }}- - run: - name: Update pip + name: Set up build tools command: | - pipenv run pip install --upgrade pip + mkdir -p $POETRY_HOME + curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python - + cat $POETRY_HOME/env >> $BASH_ENV - run: + # we remove untracked to avoid issues with stail/removed dependencies name: Install dependencies command: | - make sync - + poetry install -vvv --remove-untracked + - save_cache: paths: - ./.venv/ - key: pip-packages-{{ .Environment.CACHE_VERSION }}-{{ .Branch }}-{{ checksum "Pipfile.lock" }} + key: pip-packages-{{ .Environment.CACHE_VERSION }}-{{ .Branch }}-{{ checksum "poetry.lock" }} - run: name: Run lint @@ -43,9 +48,10 @@ jobs: make lint - persist_to_workspace: - root: . # absolute, or relative from working directory + root: /home/circleci # absolute, or relative from working directory paths: # Must be relative path from root - - ./.venv + - timeserio/.venv + - .poetry test: docker: @@ -55,20 +61,24 @@ jobs: working_directory: ~/timeserio environment: - PIPENV_VENV_IN_PROJECT: true + POETRY_VIRTUALENVS_IN_PROJECT: "true" steps: - checkout - attach_workspace: - at: . # Must be absolute path or relative path from working_directory - + at: /home/circleci # Must be absolute path or relative path from working_directory + + - run: + name: Configure poetry + command: cat ~/.poetry/env >> $BASH_ENV + - run: name: Run tests command: | TESTFILES=$(circleci tests glob "tests/**/*.py" | circleci tests split --split-by=timings) - pipenv run pytest --cov=./timeserio/ --cov-report xml --junitxml=junit/pytest/results.xml --keep-duplicates $TESTFILES + poetry run pytest --cov=./timeserio/ --cov-report xml --junitxml=junit/pytest/results.xml --keep-duplicates $TESTFILES - store_test_results: path: ./junit @@ -83,14 +93,19 @@ jobs: working_directory: ~/timeserio environment: - PIPENV_VENV_IN_PROJECT: true + POETRY_VIRTUALENVS_IN_PROJECT: "true" steps: - checkout - attach_workspace: - at: . # Must be absolute path or relative path from working_directory + at: /home/circleci # Must be absolute path or relative path from working_directory + + - run: + name: Configure poetry + command: cat ~/.poetry/env >> $BASH_ENV + - run: name: Run doctests @@ -106,19 +121,23 @@ jobs: working_directory: ~/timeserio environment: - PIPENV_VENV_IN_PROJECT: true - TWINE_NON_INTERACTIVE: true + TWINE_NON_INTERACTIVE: "true" steps: - checkout - attach_workspace: - at: . # Must be absolute path or relative path from working_directory + at: /home/circleci # Must be absolute path or relative path from working_directory + + - run: + name: Configure poetry + command: cat ~/.poetry/env >> $BASH_ENV - run: name: Create source and wheel distribution - command: make package + command: | + make package - run: name: Release to PyPI @@ -130,7 +149,8 @@ jobs: - persist_to_workspace: root: . - paths: ./build + paths: + - ./build release-prod: docker: @@ -139,16 +159,20 @@ jobs: working_directory: ~/timeserio environment: - PIPENV_VENV_IN_PROJECT: true - TWINE_NON_INTERACTIVE: true + TWINE_NON_INTERACTIVE: "true" + POETRY_VIRTUALENVS_IN_PROJECT: "true" steps: - checkout - attach_workspace: - at: . # Must be absolute path or relative path from working_directory + at: /home/circleci # Must be absolute path or relative path from working_directory + - run: + name: Configure poetry + command: cat ~/.poetry/env >> $BASH_ENV + - run: name: Release to PyPI command: | @@ -164,7 +188,7 @@ jobs: working_directory: ~/timeserio environment: - PIPENV_VENV_IN_PROJECT: true + POETRY_VIRTUALENVS_IN_PROJECT: "true" steps: @@ -177,7 +201,11 @@ jobs: sudo dpkg -i pandoc-2.7.3-1-amd64.deb - attach_workspace: - at: . # Must be absolute path or relative path from working_directory + at: /home/circleci # Must be absolute path or relative path from working_directory + + - run: + name: Configure poetry + command: cat ~/.poetry/env >> $BASH_ENV - run: name: Build sphinx docs @@ -186,7 +214,8 @@ jobs: - persist_to_workspace: root: docs/_build - paths: html + paths: + - html docs-deploy: docker: From 430eb91d7fccf914871cae31a082286178879c76 Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 17:13:40 +0000 Subject: [PATCH 6/7] Requier tensorflow 2 and use it in tests --- poetry.lock | 272 +++++++++++++++++++++++++++++++++++-------------- pyproject.toml | 3 +- 2 files changed, 197 insertions(+), 78 deletions(-) diff --git a/poetry.lock b/poetry.lock index 5bcaa25..3b85dfd 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,7 +2,7 @@ name = "absl-py" version = "0.12.0" description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py." -category = "dev" +category = "main" optional = false python-versions = "*" @@ -26,12 +26,15 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] -name = "astor" -version = "0.8.1" -description = "Read/rewrite/write Python ASTs" -category = "dev" +name = "astunparse" +version = "1.6.3" +description = "An AST unparser for Python" +category = "main" optional = false -python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +python-versions = "*" + +[package.dependencies] +six = ">=1.6.1,<2.0" [[package]] name = "async-generator" @@ -151,11 +154,19 @@ jmespath = ">=0.7.1,<1.0.0" python-dateutil = ">=2.1,<3.0.0" urllib3 = ">=1.25.4,<1.27" +[[package]] +name = "cachetools" +version = "4.2.1" +description = "Extensible memoizing collections and decorators" +category = "main" +optional = false +python-versions = "~=3.5" + [[package]] name = "certifi" version = "2020.12.5" description = "Python package for providing Mozilla's CA Bundle." -category = "dev" +category = "main" optional = false python-versions = "*" @@ -192,7 +203,7 @@ six = ">=1.11" name = "chardet" version = "4.0.0" description = "Universal encoding detector for Python 2 and 3" -category = "dev" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" @@ -487,9 +498,9 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" [[package]] name = "gast" -version = "0.2.2" +version = "0.3.3" description = "Python AST that abstracts the underlying Python version" -category = "dev" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" @@ -501,11 +512,44 @@ category = "dev" optional = false python-versions = "*" +[[package]] +name = "google-auth" +version = "1.27.1" +description = "Google Authentication Library" +category = "main" +optional = false +python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*" + +[package.dependencies] +cachetools = ">=2.0.0,<5.0" +pyasn1-modules = ">=0.2.1" +rsa = {version = ">=3.1.4,<5", markers = "python_version >= \"3.6\""} +six = ">=1.9.0" + +[package.extras] +aiohttp = ["aiohttp (>=3.6.2,<4.0.0dev)"] +pyopenssl = ["pyopenssl (>=20.0.0)"] + +[[package]] +name = "google-auth-oauthlib" +version = "0.4.3" +description = "Google Authentication Library" +category = "main" +optional = false +python-versions = ">=3.6" + +[package.dependencies] +google-auth = ">=1.0.0" +requests-oauthlib = ">=0.7.0" + +[package.extras] +tool = ["click (>=6.0.0)"] + [[package]] name = "google-pasta" version = "0.2.0" description = "pasta is an AST-based Python refactoring library" -category = "dev" +category = "main" optional = false python-versions = "*" @@ -516,7 +560,7 @@ six = "*" name = "grpcio" version = "1.36.1" description = "HTTP/2-based RPC framework" -category = "dev" +category = "main" optional = false python-versions = "*" @@ -530,7 +574,7 @@ protobuf = ["grpcio-tools (>=1.36.1)"] name = "h5py" version = "2.10.0" description = "Read and write HDF5 files from Python" -category = "dev" +category = "main" optional = false python-versions = "*" @@ -573,7 +617,7 @@ six = "*" name = "idna" version = "2.10" description = "Internationalized Domain Names in Applications (IDNA)" -category = "dev" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" @@ -789,26 +833,11 @@ python-versions = "*" [package.dependencies] pygments = ">=2.4.1,<3" -[[package]] -name = "keras-applications" -version = "1.0.8" -description = "Reference implementations of popular deep learning models" -category = "dev" -optional = false -python-versions = "*" - -[package.dependencies] -h5py = "*" -numpy = ">=1.9.1" - -[package.extras] -tests = ["pytest", "pytest-pep8", "pytest-xdist", "pytest-cov"] - [[package]] name = "keras-preprocessing" version = "1.1.2" description = "Easy data preprocessing and data augmentation for deep learning models" -category = "dev" +category = "main" optional = false python-versions = "*" @@ -863,7 +892,7 @@ mistune = "*" name = "markdown" version = "3.3.4" description = "Python implementation of Markdown." -category = "dev" +category = "main" optional = false python-versions = ">=3.6" @@ -1142,11 +1171,24 @@ category = "main" optional = false python-versions = ">=3.5" +[[package]] +name = "oauthlib" +version = "3.1.0" +description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic" +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.extras] +rsa = ["cryptography"] +signals = ["blinker"] +signedtoken = ["cryptography", "pyjwt (>=1.0.0)"] + [[package]] name = "opt-einsum" version = "3.3.0" description = "Optimizing numpys einsum function" -category = "dev" +category = "main" optional = false python-versions = ">=3.5" @@ -1240,7 +1282,7 @@ dev = ["pre-commit", "tox"] name = "protobuf" version = "3.15.5" description = "Protocol Buffers" -category = "dev" +category = "main" optional = false python-versions = "*" @@ -1290,10 +1332,21 @@ six = ">=1.0.0" name = "pyasn1" version = "0.4.8" description = "ASN.1 types and codecs" -category = "dev" +category = "main" optional = false python-versions = "*" +[[package]] +name = "pyasn1-modules" +version = "0.2.8" +description = "A collection of ASN.1-based protocols modules." +category = "main" +optional = false +python-versions = "*" + +[package.dependencies] +pyasn1 = ">=0.4.6,<0.5.0" + [[package]] name = "pycodestyle" version = "2.6.0" @@ -1566,7 +1619,7 @@ md = ["cmarkgfm (>=0.5.0,<0.6.0)"] name = "requests" version = "2.25.1" description = "Python HTTP for Humans." -category = "dev" +category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" @@ -1580,6 +1633,21 @@ urllib3 = ">=1.21.1,<1.27" security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] +[[package]] +name = "requests-oauthlib" +version = "1.3.0" +description = "OAuthlib authentication support for Requests." +category = "main" +optional = false +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" + +[package.dependencies] +oauthlib = ">=3.0.0" +requests = ">=2.0.0" + +[package.extras] +rsa = ["oauthlib[signedtoken] (>=3.0.0)"] + [[package]] name = "requests-toolbelt" version = "0.9.1" @@ -1622,7 +1690,7 @@ idna2008 = ["idna"] name = "rsa" version = "4.7.2" description = "Pure-Python RSA implementation" -category = "dev" +category = "main" optional = false python-versions = ">=3.5, <4" @@ -1880,51 +1948,63 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "tensorboard" -version = "1.15.0" +version = "2.4.1" description = "TensorBoard lets you watch Tensors Flow" -category = "dev" +category = "main" optional = false python-versions = ">= 2.7, != 3.0.*, != 3.1.*" [package.dependencies] absl-py = ">=0.4" -grpcio = ">=1.6.3" +google-auth = ">=1.6.3,<2" +google-auth-oauthlib = ">=0.4.1,<0.5" +grpcio = ">=1.24.3" markdown = ">=2.6.8" numpy = ">=1.12.0" protobuf = ">=3.6.0" +requests = ">=2.21.0,<3" six = ">=1.10.0" +tensorboard-plugin-wit = ">=1.6.0" werkzeug = ">=0.11.15" +[[package]] +name = "tensorboard-plugin-wit" +version = "1.8.0" +description = "What-If Tool TensorBoard plugin." +category = "main" +optional = false +python-versions = "*" + [[package]] name = "tensorflow" -version = "1.15.2" +version = "2.3.1" description = "TensorFlow is an open source machine learning framework for everyone." -category = "dev" +category = "main" optional = false python-versions = "*" [package.dependencies] absl-py = ">=0.7.0" -astor = ">=0.6.0" -gast = "0.2.2" -google-pasta = ">=0.1.6" +astunparse = "1.6.3" +gast = "0.3.3" +google-pasta = ">=0.1.8" grpcio = ">=1.8.6" -keras-applications = ">=1.0.8" -keras-preprocessing = ">=1.0.5" -numpy = ">=1.16.0,<2.0" +h5py = ">=2.10.0,<2.11.0" +keras-preprocessing = ">=1.1.1,<1.2" +numpy = ">=1.16.0,<1.19.0" opt-einsum = ">=2.3.2" -protobuf = ">=3.6.1" -six = ">=1.10.0" -tensorboard = ">=1.15.0,<1.16.0" -tensorflow-estimator = "1.15.1" +protobuf = ">=3.9.2" +six = ">=1.12.0" +tensorboard = ">=2.3.0,<3" +tensorflow-estimator = ">=2.3.0,<2.4.0" termcolor = ">=1.1.0" wrapt = ">=1.11.1" [[package]] name = "tensorflow-estimator" -version = "1.15.1" +version = "2.3.0" description = "TensorFlow Estimator." -category = "dev" +category = "main" optional = false python-versions = "*" @@ -1950,7 +2030,7 @@ resolved_reference = "2008fc57c085df167fb77cfe97dee4341324cb7f" name = "termcolor" version = "1.1.0" 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pytest-xdist = "<2.0" sphinx-autodoc-typehints = ">=1.6.0" sphinx-rtd-theme = ">=0.4.3" sphinxcontrib-apidoc = ">=0.3.0" -tensorflow = "==1.15.2" +tensorflow = "==2.3.1" tensorpandas = {git = "https://github.com/ig248/tensorpandas.git"} twine = "*" yapf = "*" From 98dc7393c09ded8409afd21bc172be1307740e71 Mon Sep 17 00:00:00 2001 From: Igor Date: Wed, 10 Mar 2021 17:21:35 +0000 Subject: [PATCH 7/7] Update doctest to match tf2 output --- timeserio/keras/multinetwork.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/timeserio/keras/multinetwork.py b/timeserio/keras/multinetwork.py index 0821161..ca29358 100644 --- a/timeserio/keras/multinetwork.py +++ b/timeserio/keras/multinetwork.py @@ -44,7 +44,7 @@ class MultiNetworkBase(abc.ABC): Models are instantiated on demand: >>> mnet.model - {'model_1': <...keras.engine.training.Model ...>, 'model_2': <...>} + {'model_1': <...keras.engine...>, 'model_2': <...>} """