diff --git a/.github/workflows/validate-metadata.yaml b/.github/workflows/validate-metadata.yaml new file mode 100644 index 0000000..70a0933 --- /dev/null +++ b/.github/workflows/validate-metadata.yaml @@ -0,0 +1,49 @@ +name: Validation + +on: + push: + branches: [main, yamale] + pull_request: + workflow_dispatch: + +jobs: + list-metadata-files: + runs-on: ubuntu-latest + outputs: + matrix: ${{ steps.file-matrix.outputs.matrix }} + steps: + - uses: actions/checkout@v4 + - id: file-matrix + run: echo "::set-output name=matrix::$(find -iname metadata.yaml | jq -Rsc 'split("\n")[:-1]')" + + yamale-validate: + needs: list-metadata-files + runs-on: ubuntu-latest + strategy: + matrix: + metadata-file: ${{ fromJSON(needs.list-metadata-files.outputs.matrix) }} + + steps: + - name: Check out repository + uses: actions/checkout@v4 + + - name: Install Yamale + run: "pip install yamale" + + - name: Install ruamel + run: "pip install ruamel.yaml" + + - name: Run Yamale + run: | + yamale -s schema.yaml -p ruamel ${{ matrix.metadata-file }} + + # cff-validate: + # needs: list-metadata-files + # runs-on: ubuntu-latest + # strategy: + # matrix: + # metadata-file: ${{ fromJSON(needs.list-metadata-files.outputs.matrix) }} + # + # steps: + # - name: Validate citation + # uses: dieghernan/cff-validator@v3 \ No newline at end of file diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..52c1c38 --- /dev/null +++ b/.gitignore @@ -0,0 +1,5 @@ +.Rproj.user +.Rhistory +.RData +.Ruserdata +*.Rproj \ No newline at end of file diff --git a/raw/innovasea/vr2/VR2PC-v1.00/VR2 3145 20041115.000 b/raw/innovasea/vr2/VR2PC-v1.00/VR2 3145 20041115.000 new file mode 100644 index 0000000..b2c6250 --- /dev/null +++ b/raw/innovasea/vr2/VR2PC-v1.00/VR2 3145 20041115.000 @@ -0,0 +1,872 @@ +*01,Dataformat +>01,1.00 +*02,Filename +>02,C:\Program Files\Vemco\VR2PC\Data\VR2 3145 20041115.000 +*03,S/N +>03,3145 +*04,VR2 Model +>04,VR2-069.0k-1.03-2-1431-C(SN3145) +*05,ID String +>05,27SEP04GIB +*06,Blanking Interval +>06,300 +*07,Total deployments +>07,6 +*08,StartTime(yyyy-mm-dd,hh:m:ss) +>08,2004-09-27,12:56:01 +*09,StopTime(yyyy-mm-dd,hh:m:ss) +>09,2004-11-15,08:02:28 +*10,Percentage of Memory Full +>10,0 % +*11,Total Syncs +>11,1261 +*12,Checksum invalid +>12,138 +*13,Total pulses received +>13,9097 +*14,Total detections +>14,827 +*15,PC Time at download(yyyy-mm-dd,hh:m:ss) +>15,2004-11-15,07:04:10 +*16,Last battery replacement(yyyy-mm-dd,hh:m:ss) +>16,2004-09-27 11:54:21 +*21,Channel,sync,bin,type +>21,A,401.2,22.3,(1)256 Pinger +*22,Channel,sync,bin,type +>22,B,380.0,20.0,(4)4K Pinger +*23,Channel,sync,bin,type +>23,C,360.0,20.0,(3)256 Sensor +*24,Channel,sync,bin,type +>24,D,340.0,20.0,(1)256 Pinger +*44,ChannelA,code,Date,Time +*46,ChannelB,code,Date,Time +*43,ChannelC,code,Date,Time,data,units +*44,ChannelD,code,Date,Time +*100,EOH +>46,B,00108,2004-10-01,12:11:12 +>46,B,00108,2004-10-01,12:12:21 +>46,B,00108,2004-10-01,12:13:26 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+>46,B,00116,2004-11-01,23:44:04 +>46,B,00116,2004-11-01,23:44:49 +>46,B,00116,2004-11-01,23:45:58 +>46,B,00116,2004-11-01,23:47:02 +>46,B,00116,2004-11-01,23:47:59 +>46,B,00116,2004-11-01,23:48:40 +>46,B,00116,2004-11-01,23:49:39 +>46,B,00116,2004-11-01,23:50:26 +>46,B,00116,2004-11-01,23:51:35 +>46,B,00116,2004-11-01,23:54:35 +>46,B,00116,2004-11-01,23:55:41 +>46,B,00116,2004-11-01,23:56:32 +>46,B,00116,2004-11-01,23:57:35 +>46,B,00116,2004-11-02,00:05:25 diff --git a/raw/innovasea/vr2/VR2PC-v1.00/metadata.yaml b/raw/innovasea/vr2/VR2PC-v1.00/metadata.yaml new file mode 100644 index 0000000..557ff14 --- /dev/null +++ b/raw/innovasea/vr2/VR2PC-v1.00/metadata.yaml @@ -0,0 +1,59 @@ +name: "VR2 3145 20041115.000" +file_type: raw detections +poc: + name: "Michael O'Brien" + contact: "obrien@umces.edu" +citation.cff: + cff-version: 1.2.0 # https://citation-file-format.github.io/ + message: "Please cite this dataset using the metadata from 'preferred-citation'." + preferred-citation: + type: article + authors: + - family-names: "Wingate" + given-names: "Rebecca" + - family-names: "Secor" + given-names: "David" + orcid: "https://orcid.org/0000-0001-6007-4827" + doi: "10.1577/T06-056.1" + journal: "Transactions of the American Fisheries Society" + month: 9 + start: 95 # First page number + end: 104 # Last page number + title: "Intercept Telemetry of the Hudson River Striped Bass Resident Contingent: Migration and Homing Patterns" + issue: 1 + volume: 136 + year: 2007 +format: ASCII text +size_bytes: 28381 +recording: + start: 2004-09-27T12:56:01Z + end: 2004-11-15T08:02:28Z +creation_date: 2004-11-15 +exporting_software: + name: VR2PC + version: 1.00 +instrument: + type: "VR2-069.0k-1.03-2-1431-C" + frequency_khz: 69 + vendor: Vemco + firmware_version: 1.03 + code_map: + custom: + - type: "256 Pinger" + sync: 401.2 + bin: 22.3 + - type: "4K Pinger" + sync: 380.0 + bin: 20.0 + - type: "256 Sensor" + sync: 360.0 + bin: 20.0 + - type: "256 Pinger" + sync: 340 + bin: 20.0 + serial_number: 3145 +records: + transmitter: + - type: "4K Pinger" + n_detected: 6 + n_detections: 827 \ No newline at end of file diff --git a/schema.yaml b/schema.yaml new file mode 100644 index 0000000..8017f97 --- /dev/null +++ b/schema.yaml @@ -0,0 +1,37 @@ +# https://github.com/23andMe/Yamale?tab=readme-ov-file#validators +name: str() +file_type: str() +poc: + name: str() + contact: regex('^.*@.*\\..*$') +citation.cff: map() +format: str() +size_bytes: int() +recording: + start: timestamp(min='1990-01-01 00:00:00') + end: timestamp(min='1990-01-01 00:00:00') +creation_date: day(min='1990-01-01') +exporting_software: + name: str() + version: any(str(), num()) +instrument: + type: str() + frequency_khz: num() + vendor: str() + firmware_version: any(str(), num()) + code_map: + custom: list(include('custom_map'), required=False) + serial_number: num() +records: + transmitter: list(include('transmitter_record')) + +--- +custom_map: + type: str() + sync: num() + bin: num() + +transmitter_record: + type: str() + n_detected: int() + n_detections: int() \ No newline at end of file