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Merge branch 'master' into anitacaron/issue769
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Anita Caron authored Aug 12, 2024
2 parents f3b3004 + 35d510a commit dfda9df
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Showing 2 changed files with 36 additions and 24 deletions.
44 changes: 22 additions & 22 deletions src/ontology/components/core.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -665,10 +665,10 @@ A continuant cannot have an occurrent as part: use 'participates in'.
///////////////////////////////////////////////////////////////////////////////////////
-->

<rdf:Description rdf:about="urn:swrl#e">
<rdf:Description rdf:about="urn:swrl:var#e">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description rdf:about="urn:swrl#d">
<rdf:Description rdf:about="urn:swrl:var#d">
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#Variable"/>
</rdf:Description>
<rdf:Description>
Expand All @@ -680,8 +680,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
Expand All @@ -691,7 +691,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000016"/>
<swrl:argument1 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -706,8 +706,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000091"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -723,8 +723,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
Expand All @@ -734,7 +734,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<swrl:argument1 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -749,8 +749,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000086"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -766,8 +766,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
Expand All @@ -777,7 +777,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000023"/>
<swrl:argument1 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -792,8 +792,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000087"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -809,8 +809,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000053"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest>
Expand All @@ -820,7 +820,7 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#ClassAtom"/>
<swrl:classPredicate rdf:resource="http://purl.obolibrary.org/obo/BFO_0000034"/>
<swrl:argument1 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand All @@ -835,8 +835,8 @@ A continuant cannot have an occurrent as part: use &apos;participates in&apos;.
<rdf:Description>
<rdf:type rdf:resource="http://www.w3.org/2003/11/swrl#IndividualPropertyAtom"/>
<swrl:propertyPredicate rdf:resource="http://purl.obolibrary.org/obo/RO_0000085"/>
<swrl:argument1 rdf:resource="urn:swrl#e"/>
<swrl:argument2 rdf:resource="urn:swrl#d"/>
<swrl:argument1 rdf:resource="urn:swrl:var#e"/>
<swrl:argument2 rdf:resource="urn:swrl:var#d"/>
</rdf:Description>
</rdf:first>
<rdf:rest rdf:resource="http://www.w3.org/1999/02/22-rdf-syntax-ns#nil"/>
Expand Down
16 changes: 14 additions & 2 deletions src/ontology/ro-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -584,6 +584,7 @@ Declaration(ObjectProperty(obo:RO_0017005))
Declaration(ObjectProperty(obo:RO_0017006))
Declaration(ObjectProperty(obo:RO_0017008))
Declaration(ObjectProperty(obo:RO_0017009))
Declaration(ObjectProperty(obo:RO_0017502))
Declaration(ObjectProperty(obo:RO_0018001))
Declaration(ObjectProperty(obo:RO_0018002))
Declaration(ObjectProperty(obo:RO_0018003))
Expand Down Expand Up @@ -933,7 +934,7 @@ SubAnnotationPropertyOf(obo:RO_0002504 obo:RO_0002175)

# Annotation Property: obo:RO_0002535 (temporal logical macro assertion on a class)

AnnotationAssertion(obo:IAO_0000232 obo:RO_0002535 "This properties were created originally for the annotation of developmental or life cycle stages, such as for example Carnegie Stage 20 in humans. ")
AnnotationAssertion(obo:IAO_0000232 obo:RO_0002535 "This property was originally created for the annotation of developmental or life cycle stages, such as for example Carnegie Stage 20 in humans. ")
AnnotationAssertion(rdfs:label obo:RO_0002535 "temporal logical macro assertion on a class")
SubAnnotationPropertyOf(obo:RO_0002535 obo:RO_0002420)

Expand Down Expand Up @@ -6645,6 +6646,17 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0017009 "2023-03-29T17:06:06Z"
AnnotationAssertion(oboInOwl:inSubset obo:RO_0017009 obo:RO_0002259)
AnnotationAssertion(rdfs:label obo:RO_0017009 "is owned by"@en)

# Object Property: obo:RO_0017502 (collected during)

AnnotationAssertion(obo:IAO_0000112 obo:RO_0017502 "A thorax specimen was collected during the larval stage."@en)
AnnotationAssertion(obo:IAO_0000112 obo:RO_0017502 "An oyster was collected during low tide."@en)
AnnotationAssertion(obo:IAO_0000115 obo:RO_0017502 "A relation between a material entity and an occurrent in which the material entity is collected during the existence of the occurrent."@en)
AnnotationAssertion(terms:contributor obo:RO_0017502 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(terms:date obo:RO_0017502 "2023-09-13T04:12:32Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:RO_0017502 "collected during"@en)
ObjectPropertyDomain(obo:RO_0017502 obo:BFO_0000040)
ObjectPropertyRange(obo:RO_0017502 obo:BFO_0000003)

# Object Property: obo:RO_0018001 (is myristoyltransferase activity)

AnnotationAssertion(obo:IAO_0000115 obo:RO_0018001 "Helper relation for OWL definition of RO:0018002 myristoylates")
Expand Down Expand Up @@ -7275,4 +7287,4 @@ AnnotationAssertion(oboInOwl:inSubset obo:RO_0002086 subsets:ro-eco)
AnnotationAssertion(oboInOwl:inSubset obo:RO_0002089 subsets:ro-eco)
AnnotationAssertion(oboInOwl:inSubset obo:RO_0002093 subsets:ro-eco)
AnnotationAssertion(Annotation(rdfs:comment "This is an experimental annotation") obo:IAO_0000589 rdfs:isDefinedBy "is defined by")
)
)

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